mRNA_D-herbacea_F_contig105.526.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.526.1
Unique NamemRNA_D-herbacea_F_contig105.526.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:182525..184248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.6797023-CDS-D-herbacea_F_contig105:182525..1827281622927459.6797023-CDS-D-herbacea_F_contig105:182525..182728Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 182526..182728 -
1690790181.98607-CDS-D-herbacea_F_contig105:182525..1827281690790181.98607-CDS-D-herbacea_F_contig105:182525..182728Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 182526..182728 -
1622927459.6929073-CDS-D-herbacea_F_contig105:184160..1842481622927459.6929073-CDS-D-herbacea_F_contig105:184160..184248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 184161..184248 -
1690790181.9941103-CDS-D-herbacea_F_contig105:184160..1842481690790181.9941103-CDS-D-herbacea_F_contig105:184160..184248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 184161..184248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.526.1prot_D-herbacea_F_contig105.526.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 182526..184248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.526.1

>prot_D-herbacea_F_contig105.526.1 ID=prot_D-herbacea_F_contig105.526.1|Name=mRNA_D-herbacea_F_contig105.526.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=97bp
DDELRDCLDRVGDFESSFAATPHRARNTAGYGTPPRTTTEKGTTGRGHRP
DDGVCTDVTAGATGAPLVVEESSTPSSGESKTVKQQPRVVLPEESSS
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mRNA from alignment at D-herbacea_F_contig105:182525..184248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.526.1 ID=mRNA_D-herbacea_F_contig105.526.1|Name=mRNA_D-herbacea_F_contig105.526.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1724bp|location=Sequence derived from alignment at D-herbacea_F_contig105:182525..184248- (Desmarestia herbacea DmunF female)
GACGATGAACTCCGCGACTGCTTAGATCGCGTGGGCGACTTCGAGTCCAG
TTTTGCGGCAACTCCTCATCGCGCGAGGAACACAGCCGGTGAAAACACAT
CATCTTGATATGATATTAATAGTCGAGACTATTTAATAGAGACTCTTGCT
GTGTGATTCATTCACGAATCCTGTGAAACATGTACCCACTCCTACAAATG
CTGTACTGTTGTGCTGCTTGGTTAGACAAAAAACCGGCAGCCTTGCACTG
AATATATGGTGTGTTTTTTGAGGTTTTGCGTGAAAGCACAAAAGCCTTTT
TATGTATTTGTGTATTTAAGTATTTATTCATTTTTATGACTACGTCGAGC
GTGGACGCAAATACAGCTATAATACAAACAGTACTCGTATTATTATTGTT
ACTTTCAAAAACATCAGCCGTGACGTTCCAAACTGGTTCGGGGGCCAGGG
GATAATCGTCAACCTCACTACTGTGTGATACATCGGTCGCGCGGAATCTA
TCGGTCCTCGGATAAGGCATAACGTAGTGACTCCCCTGGGGCGTCCCAGG
CTCTACAGGATAATTTTGCGGGTACTTTAAGCTCTTATTATCTTGTGCAC
TAGACTATAGCCTTTCGGAGAGGTTATGAAAAGAAAGTAAAATTGTATGT
TCACGTGCTGCTGATTCGACCTGCGCCAAAAGACTGTCAAAAGCCTTAGG
CGAGTCGCTTTACAGTAGTACAATAGTGGAGAGAGCTATTGATAGCTGCC
TTGACCATCTGCAGTAACAGCACAGCCCGGTCTTTCCGACAAGCAACCGT
TTGTTTATACGAGTAAGGTTCACAATTATCCTGTCGAGAGCTTGGCTGCT
TGGCTGGGCTTACCCAGGGGAGCACACTGTGCTTATATATTTTGTCTGAG
GAACGGTAGAATACGCACCACCGAATCATCACACACATCCCAGTAGTGAA
GTTGGCGATTATATTATCCCTGCCCTGTATGCCGACTCAATCAGTTTGGA
ACGTCGCGGCAGCAAATGTATTACTTGAACCTAACTAATTTTTACTCATC
CTTTCCACTTCTCAATCCGCAGCTCACAGGAGGAGCTCTCTTCTATTCAT
CGCTCAGCAATAAACGCCTGTCTGAACAACCCGTGGTCACAGGTGTATTC
CCTTCCCCGCCCCCCCCCCGCTGCATGCCAACCTTTGTTCTTGTCGCGCA
CAGGGTTCGGGATTCCCTTATCTCGTGGACTTGATTCAATCGAATCGTGT
GTGTAATTAAAAGTGATAAATTATATATATATATATATATACGAGGCGTG
GGTACGATACACGGGGTTGCTTAAAAGTGTTTCGGGTAGCCGCGTTTATA
CGACACTGATCGGTTCTCCGGTTTTCAGACGATACCTTCTCGGGACACTC
TTTAGCAGCGCGCCGAACGACGCAAATATTGTAGTGTGGCGTCGCCGCCG
GCATCCGCGAGCTTAAACCATGCCCTATTGTCCCGCGGTTGCCGTGCTTC
GTGACGAAACGCCCACCCAGGATATGGCACTCCGCCCCGAACAACGACGG
AAAAAGGAACAACTGGCCGTGGACATCGCCCTGATGATGGCGTGTGCACG
GATGTCACGGCCGGCGCAACCGGAGCACCTCTAGTAGTTGAAGAGTCTAG
CACACCTTCTTCTGGTGAGTCGAAGACAGTAAAGCAGCAGCCGCGCGTGG
TGTTGCCAGAAGAAAGTAGTTCCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:182525..184248-

>mRNA_D-herbacea_F_contig105.526.1 ID=mRNA_D-herbacea_F_contig105.526.1|Name=mRNA_D-herbacea_F_contig105.526.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=582bp|location=Sequence derived from alignment at D-herbacea_F_contig105:182525..184248- (Desmarestia herbacea DmunF female)
GACGATGAACTCCGCGACTGCTTAGATCGCGTGGGCGACTTCGAGTCCAG
TTTTGCGGCAACTCCTCATCGCGCGAGGAACACAGCCGGACGATGAACTC
CGCGACTGCTTAGATCGCGTGGGCGACTTCGAGTCCAGTTTTGCGGCAAC
TCCTCATCGCGCGAGGAACACAGCCGGATATGGCACTCCGCCCCGAACAA
CGACGGAAAAAGGAACAACTGGCCGTGGACATCGCCCTGATGATGGCGTG
TGCACGGATGTCACGGCCGGCGCAACCGGAGCACCTCTAGTAGTTGAAGA
GTCTAGCACACCTTCTTCTGGTGAGTCGAAGACAGTAAAGCAGCAGCCGC
GCGTGGTGTTGCCAGAAGAAAGTAGTTCCGATATGGCACTCCGCCCCGAA
CAACGACGGAAAAAGGAACAACTGGCCGTGGACATCGCCCTGATGATGGC
GTGTGCACGGATGTCACGGCCGGCGCAACCGGAGCACCTCTAGTAGTTGA
AGAGTCTAGCACACCTTCTTCTGGTGAGTCGAAGACAGTAAAGCAGCAGC
CGCGCGTGGTGTTGCCAGAAGAAAGTAGTTCC
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