mRNA_D-herbacea_F_contig1049.514.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A0A6H5KJK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 4.550e-121 Identity = 317/692 (45.81%), Postives = 387/692 (55.92%), Query Frame = 1
Query: 703 AAYHSGGSAGNGRSNLYGSAPGTLGEGSSRREQGLRGSSSVQGFLSVGGGNRR-GLRRTGMGGHQMKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVE--SGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVATKAFEACLVKPATPSSKSRRRIGRRNKHHRHASMGSDKDRPPRSDASWSTASSLS--------AVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTLSG------------------------QRQMFLGSPYNVASCSTASSSSSPTTECAPAXXXTATAPTMAVTRNPMLLLHPDAPEDGRVGLGGGGAGGGRRGVATEPLRD-----------------DFLSPLSTLSPTTAAEAVGALGLGGSGMKGAVLVAGGVGDDSPTGTGTLSPLPGHQRSIGRASSLGDVDHFFEPGMASPKEGEGGGDPSATAAGR-----------RADAGGNLLERVFGAPAPAPAPGGRSDGGVVNEGVSSDGVGRVSPRRGV-------------------VAEIIERQRQRSSPRADDVAQPWGEEGAGGAPPAAVARMKGKKPPRV 2532
A Y SGG GNGRSNLYGSAPGTLG+GS++RE GLRG SSVQGFLSVGGG++ G R G +KIKLLMLGDSGVGKSSLMDRF ED+F+++ + T+GVDFK + +N+EEV +QVWDTAGQQ+FHKITQAYYRGSHGIVLVYD+SDP +L+N YWM+SIRD AG++RVQICL+GNKVDLR+E G + + + SG V+T +GR +A++FGA +FECSAKTGCMVEEAF+A ATKA+EA LVKP+TPS++ RRR GR+ KH R AS GSD+DRPPR DAS TA+ S AV XXXXXXXXXXXXXXX P + S Y + + S+ SP + AP A+A AVT + + PLS LSP TAA A+G +G +G G+DSPTGTGT+SPLPGHQRSIG++SSLGD++ +F + SPK G D +++A RAD GG L +F DGG + G SP+ G VAEII RQRQRS PR P G++ PP AV+RMKGKKPPRV
Sbjct: 876 ARYRSGGGGGNGRSNLYGSAPGTLGDGSAQREHGLRGCSSVQGFLSVGGGSQPYGAWRGHGGAPPARKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDISDPKTLDNTAYWMRSIRDTAGSNRVQICLIGNKVDLREEVGREEQQQDLSGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEAHLVKPSTPSTRIRRRPGRK-KHRRTASQGSDRDRPPRGDASGPTAAIFSPSFASVPGAVESGAERPXXXXXXXXXXXXXXXRMRACASEVSETSTAVGPPDQASVXXXXXXXXXXXXXXXXXXXXXXXXXXFMSSSSYGRLATTPYSAPCSPPSP-APCGRPRASA---AVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEIGELVPPLSALSPKTAAAALGM-------AEGKGAPSGAAGEDSPTGTGTMSPLPGHQRSIGKSSSLGDIESYFGTSLGSPK----GSDIDSSSADXXXXXXXXXXXXRADTGG--LFGLF-----------SDDGGGGKDVHERGGFSCCSPKTGAGVGACEHGRLRNDGSGSLTVAEIIARQRQRS-PRPTAGPGPSGDD----PPPPAVSRMKGKKPPRV 1533
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: D8LMQ2_ECTSI (Rab8E, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI) HSP 1 Score: 380 bits (977), Expect = 2.870e-117 Identity = 285/670 (42.54%), Postives = 363/670 (54.18%), Query Frame = 1
Query: 829 GFLSVGGGNRR-GLRRTGMGGHQMKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVE--SGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVATKAFEACLVKPATPSSKSRRRIGRRNKHHRHASMGSDKDRPPRSDASWSTASSLSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTL---SGQRQMFLGSPYN--------------------VASCSTASSSSSP-TTECAPAXXXTATAP--TMAVTRNPMLLL----------HPDAPEDGRVGLGGGGAGGGRRGVATEPLRDDFLSPLSTLSPTTAAEAVGALGLGGSGMKGAVLVAGGVGDDSPTGTGTLSPLPGHQRSIGRASSLGDVDHFFEPGMASPKEGEGGGDPSATAAGRRADAGG------------------------NLLERVFGAPAPAPAPGGRSDGGVVNEGVSS-------DGVGRVSPRRGVVAEIIERQRQRSSPRADDVAQPWGEEGAGGAPPAAVARMKGKKPPRVPKMKRMATGD---------ADRKHG--VCKVS 2595
GFLSVGGG++ G RR G +KIKLLMLGDSGVGKSSLMDRF ED+F+++ + T+GVDFK + +N+EEV +QVWDTAGQQ+FHKITQAYYRGSHGIVLVYD+SDP +L+N YWM+SIRD AG++RVQICLVGNKVDLR+E G +G+ + +G V+T +GR +A++FGA +FECSAKTGCMVEEAF+A ATKA+EA LVKP+TPS++ RRR+GR+ KH R AS GSD+DRPPRSDAS A++ +A T +GQ + S ++S S +++P + C+P P + AVT P + + PLS LSP TAA A+G +G KGA +G G+DSPTGTGT+SPLPGHQRSIGR+SSLGD++ +F + SP G D ++A G ++ ER G +P + D G G DG G ++ VAEII RQRQRS PR PWG++ PP AV+RMKGKKPPRVP+MKRM++ D A K G VCKVS
Sbjct: 28 GFLSVGGGSQPYGARRGHGGAPPARKIKLLMLGDSGVGKSSLMDRFMEDYFSITKVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGIVLVYDMSDPKTLDNTAYWMRSIRDTAGSNRVQICLVGNKVDLREEVGLEGQQQDLAGMVETSTGRKVAEEFGAEYFECSAKTGCMVEEAFIATATKAYEAHLVKPSTPSTRIRRRLGRK-KHRRTASQGSDRDRPPRSDASGPAAATAAAATFSPSFASVPGVVESGAERPPPPDSPAARMRACASEVSETGTAVGAAGQASVMASSXXXXXXXXXXXXXXXXXXXXXRFMSSSSYGGVATTPYSAPCSPPSPAPCGRPRASAAVTXXXXXXXXXXXQSPRQEQPXXXXXXXXXXXXXXXXXXXXXXXXXHEIGELVPPLSALSPKTAAAALGM-----AGGKGAP--SGAAGEDSPTGTGTMSPLPGHQRSIGRSSSLGDMESYFGTSLGSPN----GSDIDSSADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVRERGGGFSCCSP----KQDAGA---GACEHPYRRRVDGSGSLA-----VAEIIARQRQRS-PRPTAGPGPWGDD----PPPPAVSRMKGKKPPRVPRMKRMSSSDLADGVGVGGARGKAGKNVCKVS 668
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A0A835YLY5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY5_9STRA) HSP 1 Score: 188 bits (477), Expect = 3.640e-50 Identity = 104/202 (51.49%), Postives = 128/202 (63.37%), Query Frame = 1
Query: 898 KKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGT--------------------------DGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVATKAFEA 1425
+K+K+LMLGD+GVGKSSLM+RFTED F +GTVGVDFK R + E V VQVWDTAGQ+RFHKIT+AYYRGSHGI+L YDV +P +L NI+YW+ +I+DNA + V CLVGNK+DLR E ++ V T SGR IA Q+G FFE SAKTG V AF+++ A EA
Sbjct: 1 RKVKILMLGDTGVGKSSLMNRFTEDEFFPGLVGTVGVDFKMRTLDLRGERVLVQVWDTAGQERFHKITRAYYRGSHGILLAYDVGEPATLENISYWINNIQDNASSG-VCTCLVGNKMDLRGETAAXXXXXXXXXXXXXXXXXXANPLSCCVSASPKAAPVGTDSGRAIAQQYGVAFFETSAKTGHNVHAAFVSLVESALEA 201
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: H6WB87_VAULI (Rab8 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB87_VAULI) HSP 1 Score: 186 bits (473), Expect = 2.100e-47 Identity = 100/189 (52.91%), Postives = 131/189 (69.31%), Query Frame = 1
Query: 895 MKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVE---------SGF----------VQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAV 1404
++KIK+LMLGD+GVGKSSL+ RFT+D F+ +GTVGVDFK R + E++ VQVWDTAGQ+RFHKIT+AYY G GI+L YDV +P +L NI+YW+K+IRDNA D V+ CLVGNK DL+ A + ++ SG V+T SG+ IA+++G FFE SAKTG V EAFL++
Sbjct: 253 LRKIKILMLGDTGVGKSSLIQRFTDDTFHAGMVGTVGVDFKIRTMEVLGEKITVQVWDTAGQERFHKITRAYYHGCQGILLAYDVGEPGTLENISYWIKNIRDNASKD-VRTCLVGNKADLKVRAISPYQLNWCVSASPQGSGRKRSWECPPVQVETESGQQIAEEYGVNFFEASAKTGYNVNEAFLSL 440
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A0A836BQA0_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQA0_9CHLO) HSP 1 Score: 163 bits (412), Expect = 4.270e-42 Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query: 904 IKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQIC--LVGNKVDLRQEAGTDGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVA 1407
IKLL++GDSGVGKS L+ RFT+D F S I T+G+DFK ++ + + V +Q+WDTAGQ+RF IT AYYRG+ GI+LVYD+SD S NN+ WM++I +A + ++C LVGNK+DL G D V V T G+ +AD+FG FFE SAK VEEAF AVA
Sbjct: 11 IKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVEGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDISDEASFNNVRNWMRNIEQHASDNVNKVCGILVGNKLDL----GDDKRV----VSTARGQALADEFGFRFFETSAKDNVNVEEAFHAVA 172
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: D8QMU7_SELML (Rab family GTPase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QMU7_SELML) HSP 1 Score: 162 bits (410), Expect = 8.720e-42 Identity = 88/179 (49.16%), Postives = 116/179 (64.80%), Query Frame = 1
Query: 871 RTGMGGHQMKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVA 1407
R G G +IKLL++GDSGVGKS ++ RF++D F S I T+G+DFK R ++ V +QVWDTAGQ+RF IT AYYRG+ GI+LVYDV+D S NNI W+K+I NA ++ V LVGNK D+ + V T G+ +A+++G FFE SAKTG VEE F A+A
Sbjct: 6 RPGAGADHDYRIKLLLIGDSGVGKSCVLLRFSDDSFTTSFITTIGIDFKIRTIELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWVKNIEQNA-SENVSRVLVGNKADMDESKRA--------VTTAQGQALANEYGIRFFETSAKTGQNVEETFFAIA 175
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A0A7S1XMQ1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMQ1_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.490e-41 Identity = 90/179 (50.28%), Postives = 123/179 (68.72%), Query Frame = 1
Query: 895 MKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATIN--EEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVE-SGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVATKAFE 1422
+KK K+LMLGDS VGK+SL++RF ED F + +GTVGVDFK ++ + +E VQ+WDTAGQ+RFH+IT+ YYRG++ I L +D S SL+N+ YW+++I+DNA D V + L NK+DLR+ D E SG V+ G+ IA Q+G +FE SAKTG VE +F +A AFE
Sbjct: 97 LKKFKILMLGDSAVGKTSLINRFVEDKFAHNLVGTVGVDFKMKRMWLGPTKEMCTVQIWDTAGQERFHRITKTYYRGANAIYLTFDCSSQDSLDNLEYWVQNIKDNASDD-VLVLLAANKIDLRETESPDKATEISGIVRR--GQDIASQYGIEYFETSAKTGDGVEASFTRLADIAFE 272
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A0A482RSH1_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSH1_9ARCH) HSP 1 Score: 164 bits (415), Expect = 1.520e-41 Identity = 86/186 (46.24%), Postives = 126/186 (67.74%), Query Frame = 1
Query: 895 MKKIKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVATKAFEACLVKPATPS 1452
++++K+L+LGDSGVGKSSL+ R+T D F+ S TVGV+FK+++ E + VQVWDTAGQ++FHKIT +YY+G+ GI+LVYDV+D +SL N+ YW+K+I+ +A +D V + LVGNK+DLR + + ++ G+ I+ +FG FFE SAK VE AF+ + +A TPS
Sbjct: 50 VRRVKILLLGDSGVGKSSLIVRWTHDTFSPSLASTVGVNFKNKKIAYKGECLQVQVWDTAGQEQFHKITTSYYKGAQGIMLVYDVADANSLANVEYWIKNIKTHA-SDSVHVVLVGNKIDLRH-----ADPDKKYIDMNRGKEISHKFGVPFFETSAKDSSNVEHAFMTLVGDIADATSPTKITPS 229
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: A8JHI5_CHLRE (Small rab-related GTPase n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8JHI5_CHLRE) HSP 1 Score: 161 bits (407), Expect = 2.040e-41 Identity = 85/168 (50.60%), Postives = 114/168 (67.86%), Query Frame = 1
Query: 904 IKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVA 1407
IKLL++GDSGVGKS L+ RFT+D F S I T+G+DFK ++ + + V +Q+WDTAGQ+RF IT AYYRG+ GI+LVYD++D S NN+ WM++I +A +D V LVGNK+DL ++ V GR +AD++G FFE SAK VEEAFL+VA
Sbjct: 13 IKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVEGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEGSFNNVRNWMRNIEQHA-SDNVNKILVGNKLDLSEKR---------VVSEARGRALADEYGFRFFETSAKDNVCVEEAFLSVA 170
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 n=6 Tax=Volvox TaxID=3066 RepID=YPTV2_VOLCA) HSP 1 Score: 160 bits (405), Expect = 3.700e-41 Identity = 84/168 (50.00%), Postives = 115/168 (68.45%), Query Frame = 1
Query: 904 IKLLMLGDSGVGKSSLMDRFTEDHFNLSTIGTVGVDFKDRQATINEEEVAVQVWDTAGQQRFHKITQAYYRGSHGIVLVYDVSDPHSLNNITYWMKSIRDNAGTDRVQICLVGNKVDLRQEAGTDGEVESGFVQTCSGRMIADQFGAGFFECSAKTGCMVEEAFLAVA 1407
IKLL++GDSGVGKS L+ RFT+D F S I T+G+DFK ++ ++ + V +Q+WDTAGQ+RF IT AYYRG+ GI+LVYD++D S NN+ WM++I +A +D V LVGNK+DL ++ V G+ +AD+FG F+E SAK VEEAF+AVA
Sbjct: 14 IKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHA-SDNVNKILVGNKLDLAEDKRV--------VSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVA 172 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1049.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1049.514.1 >prot_D-herbacea_F_contig1049.514.1 ID=prot_D-herbacea_F_contig1049.514.1|Name=mRNA_D-herbacea_F_contig1049.514.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=713bp MQGLRPPVPTRKYSSDRDLSSDDSEPEGDRYFSGDEDEDDDDYEGGGGMDback to top mRNA from alignment at D-herbacea_F_contig1049:28079..45280+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1049.514.1 ID=mRNA_D-herbacea_F_contig1049.514.1|Name=mRNA_D-herbacea_F_contig1049.514.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=17202bp|location=Sequence derived from alignment at D-herbacea_F_contig1049:28079..45280+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1049:28079..45280+ >mRNA_D-herbacea_F_contig1049.514.1 ID=mRNA_D-herbacea_F_contig1049.514.1|Name=mRNA_D-herbacea_F_contig1049.514.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4278bp|location=Sequence derived from alignment at D-herbacea_F_contig1049:28079..45280+ (Desmarestia herbacea DmunF female)back to top |