mRNA_D-herbacea_F_contig1047.512.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1047.512.1
Unique NamemRNA_D-herbacea_F_contig1047.512.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1047.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1047contigD-herbacea_F_contig1047:76382..76720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.9603717-CDS-D-herbacea_F_contig1047:76381..767201622927458.9603717-CDS-D-herbacea_F_contig1047:76381..76720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1047 76382..76720 +
1690790181.6310413-CDS-D-herbacea_F_contig1047:76381..767201690790181.6310413-CDS-D-herbacea_F_contig1047:76381..76720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1047 76382..76720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1047.512.1prot_D-herbacea_F_contig1047.512.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1047 76382..76720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1047.512.1

>prot_D-herbacea_F_contig1047.512.1 ID=prot_D-herbacea_F_contig1047.512.1|Name=mRNA_D-herbacea_F_contig1047.512.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=113bp
IVQGADSPSQAWRQLVQHYRASGVKEWRRLALDFYSMKMELGEHPRQFFL
RVDRLVKEMERVGRPTLEKDIDIVLLTGLSSQYDAEVRMLESSAEWPDRA
WIERAVYNQYDHL
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mRNA from alignment at D-herbacea_F_contig1047:76382..76720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1047.512.1 ID=mRNA_D-herbacea_F_contig1047.512.1|Name=mRNA_D-herbacea_F_contig1047.512.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=339bp|location=Sequence derived from alignment at D-herbacea_F_contig1047:76382..76720+ (Desmarestia herbacea DmunF female)
ATCGTTCAAGGGGCGGACTCGCCCAGCCAGGCCTGGCGCCAGCTCGTGCA
GCATTACCGTGCGAGTGGTGTGAAGGAATGGCGACGGTTGGCACTGGACT
TTTACTCGATGAAGATGGAACTTGGTGAGCATCCGAGACAATTTTTCTTG
CGTGTGGATCGTCTCGTCAAGGAGATGGAGAGGGTAGGACGGCCGACGCT
AGAGAAGGACATCGATATCGTACTACTGACTGGACTGTCCAGCCAGTACG
ATGCGGAGGTTCGAATGCTGGAAAGCTCTGCCGAGTGGCCGGATCGCGCG
TGGATAGAGCGCGCAGTTTATAACCAGTATGACCACCTA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1047:76382..76720+

>mRNA_D-herbacea_F_contig1047.512.1 ID=mRNA_D-herbacea_F_contig1047.512.1|Name=mRNA_D-herbacea_F_contig1047.512.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=678bp|location=Sequence derived from alignment at D-herbacea_F_contig1047:76382..76720+ (Desmarestia herbacea DmunF female)
ATCGTTCAAGGGGCGGACTCGCCCAGCCAGGCCTGGCGCCAGCTCGTGCA
GCATTACCGTGCGAGTGGTGTGAAGGAATGGCGACGGTTGGCACTGGACT
TTTACTCGATGAAGATGGAACTTGGTGAGCATCCGAGACAATTTTTCTTG
CGTGTGGATCGTCTCGTCAAGGAGATGGAGAGGGTAGGACGGCCGACGCT
AGAGAAGGACATCGATATCGTACTACTGACTGGACTGTCCAGCCAGTACG
ATGCGGAGGTTCGAATGCTGGAAAGCTCTGCCGAGTGGCCGGATCGCGCG
TGGATAGAGCGCGCAGTTTATAACCAGTATGACCACCTAATCGTTCAAGG
GGCGGACTCGCCCAGCCAGGCCTGGCGCCAGCTCGTGCAGCATTACCGTG
CGAGTGGTGTGAAGGAATGGCGACGGTTGGCACTGGACTTTTACTCGATG
AAGATGGAACTTGGTGAGCATCCGAGACAATTTTTCTTGCGTGTGGATCG
TCTCGTCAAGGAGATGGAGAGGGTAGGACGGCCGACGCTAGAGAAGGACA
TCGATATCGTACTACTGACTGGACTGTCCAGCCAGTACGATGCGGAGGTT
CGAATGCTGGAAAGCTCTGCCGAGTGGCCGGATCGCGCGTGGATAGAGCG
CGCAGTTTATAACCAGTATGACCACCTA
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