mRNA_D-herbacea_F_contig1045.511.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1045.511.1
Unique NamemRNA_D-herbacea_F_contig1045.511.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1045.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1045contigD-herbacea_F_contig1045:57711..58259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.79333-CDS-D-herbacea_F_contig1045:57710..578321622927458.79333-CDS-D-herbacea_F_contig1045:57710..57832Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 57711..57832 +
1690790181.5655282-CDS-D-herbacea_F_contig1045:57710..578321690790181.5655282-CDS-D-herbacea_F_contig1045:57710..57832Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 57711..57832 +
1622927458.8099167-CDS-D-herbacea_F_contig1045:58159..582591622927458.8099167-CDS-D-herbacea_F_contig1045:58159..58259Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 58160..58259 +
1690790181.574935-CDS-D-herbacea_F_contig1045:58159..582591690790181.574935-CDS-D-herbacea_F_contig1045:58159..58259Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 58160..58259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1045.511.1prot_D-herbacea_F_contig1045.511.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1045 57711..58259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1045.511.1

>prot_D-herbacea_F_contig1045.511.1 ID=prot_D-herbacea_F_contig1045.511.1|Name=mRNA_D-herbacea_F_contig1045.511.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=74bp
PREGDCHQSYKALTELEELNSLKAKRRSLKNPRMSLFPRKRDCTTMNNNA
NLLHDNFLQSAFRSDDTAESSGTQ
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mRNA from alignment at D-herbacea_F_contig1045:57711..58259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1045.511.1 ID=mRNA_D-herbacea_F_contig1045.511.1|Name=mRNA_D-herbacea_F_contig1045.511.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=549bp|location=Sequence derived from alignment at D-herbacea_F_contig1045:57711..58259+ (Desmarestia herbacea DmunF female)
CCCCGAGAGGGAGATTGTCATCAAAGCTATAAGGCTTTGACGGAGTTGGA
GGAACTCAACTCGCTAAAGGCGAAAAGACGCAGTCTGAAGAATCCGAGGA
TGAGCCTGTTTCCCAGGAAAAGGTGAGACGTGTCTGTCGAGACCAGCGGT
GCCGACATCACGCTAAAACTCCCATCATCACTAATGCAAGAGATTCCCAC
TAGACCAGCTAGCCATGTGTGTGACGGTGGCCCCCCTCGTATTTATTTTT
GTTGCCGCAACACGTGCATGTTTTTGTTGCCGCCACGCAACACCTACGCT
GGTTGTATATTTATAAGTGGTTACTCCTTTGGGAAGGCGTCGAATGATTC
GTGCTACCGTCTTGTACGTCTTTCAGCGGCTCGGAGCCGATCGTGCGAGT
GGCTAATCCCATCTATTTTCTTGATCTTCCTCTTTCGTTTATCCTGTAGG
GATTGCACCACCATGAACAACAACGCCAATTTGCTACATGACAATTTCTT
ACAGTCGGCGTTCAGAAGCGACGACACCGCCGAGTCGTCCGGCACCCAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1045:57711..58259+

>mRNA_D-herbacea_F_contig1045.511.1 ID=mRNA_D-herbacea_F_contig1045.511.1|Name=mRNA_D-herbacea_F_contig1045.511.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=444bp|location=Sequence derived from alignment at D-herbacea_F_contig1045:57711..58259+ (Desmarestia herbacea DmunF female)
CCCCGAGAGGGAGATTGTCATCAAAGCTATAAGGCTTTGACGGAGTTGGA
GGAACTCAACTCGCTAAAGGCGAAAAGACGCAGTCTGAAGAATCCGAGGA
TGAGCCTGTTTCCCAGGAAAAGCCCCGAGAGGGAGATTGTCATCAAAGCT
ATAAGGCTTTGACGGAGTTGGAGGAACTCAACTCGCTAAAGGCGAAAAGA
CGCAGTCTGAAGAATCCGAGGATGAGCCTGTTTCCCAGGAAAAGGGATTG
CACCACCATGAACAACAACGCCAATTTGCTACATGACAATTTCTTACAGT
CGGCGTTCAGAAGCGACGACACCGCCGAGTCGTCCGGCACCCAAGGATTG
CACCACCATGAACAACAACGCCAATTTGCTACATGACAATTTCTTACAGT
CGGCGTTCAGAAGCGACGACACCGCCGAGTCGTCCGGCACCCAA
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