mRNA_D-herbacea_F_contig1045.510.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1045.510.1
Unique NamemRNA_D-herbacea_F_contig1045.510.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.550e-15
Identity = 54/200 (27.00%), Postives = 104/200 (52.00%), Query Frame = 2 
Query:   50 VEEVVDAACADFRKRGTLPLDDIRDVAYTSVLSHPICKAALEEKCNLAVISSYTSIGESISTVWNLMSKSGNVSRDHVWPVRRAILACFAGPRIAYLWSGEISSWRNVFSNAFREAKTRRAAALDHDDLQQLLSRKRQRD---------ALARISSSICNRTQPSPCATKTKHDYAAGNHVHR-TDN---CGKQLKCKFH 610
            ++E +D++         +  +  +  AY  V++H IC+  + ++C  A  + + ++ +++  VW+++S S  V+    + +RR ++     PR+++  +        +    +++A+ RR  AL ++D  ++  +++QR          A+AR+  SI  RTQPSPC TKTKHD A GNH+    DN   C +   C+ H
Sbjct:   76 IKENIDSSARSHADTFGMSFEQAQKDAYKGVMTHEICRQVVHDECK-AKKNEHHAVVQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVSFEAAKSFLGG-TLKEKTYKKARERREEALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRESIEERTQPSPCETKTKHDRAKGNHIRSDADNSLVCVRPELCQTH 273
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.080e-10
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:  572 TDNCGKQLKCKFHFGWVTDSGVKVRSDDGESSERDIHIEHHYFGACQWKII 724
            TDNC KQ KC+FHFGW+    V +R + GES+   +H+EHHYFG+C  K +
Sbjct:   95 TDNCAKQFKCRFHFGWLASYEVMIRDNHGESTNVPVHVEHHYFGSCHGKSV 145
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.340e-10
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:  572 TDNCGKQLKCKFHFGWVTDSGVKVRSDDGESSERDIHIEHHYFGACQWKIIS 727
            TDNC KQ KC+FHFGWV D+ +     DGE +   +H+EHHYFGAC  K +S
Sbjct:  666 TDNCAKQFKCRFHFGWVADAQIMGLDKDGEPTGIRVHMEHHYFGACHGKNVS 717
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.300e-10
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  572 TDNCGKQLKCKFHFGWVTDSGVKVRSDDGESSERDIHIEHHYFGACQWKIIS 727
            TDNC KQ KC+FHFGW+    V V   +GES+   +HIEHHYFG+C  K  S
Sbjct:  526 TDNCAKQFKCRFHFGWLASRAVMVCDTNGESTNVPVHIEHHYFGSCHGKSSS 577
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.020e-9
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  572 TDNCGKQLKCKFHFGWVTDSGVKVRSDDGESSERDIHIEHHYFGAC 709
            TDNC KQ KC+FHFGW+    V +R ++G S+   +H+EHHYFG+C
Sbjct:  530 TDNCAKQFKCRFHFGWLASHEVMIRDNNGGSTNVPVHVEHHYFGSC 575
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: A0A6H5JXK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.080e-9
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  572 TDNCGKQLKCKFHFGWVTDSGVKVRSDDGESSERDIHIEHHYFGACQWK 718
            TDNC KQ KC+FHFGW+    V +R ++G S+   +H+EHH+FG+C  K
Sbjct:  103 TDNCAKQFKCRFHFGWLASHEVIIRDNNGGSTNVPVHVEHHHFGSCHGK 151
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BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.830e-6
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  910 TLLVTKKANTLLGRKYKFVGNDEVTNAVRAGVRSATKEIEVVGCQAISRTAPTGTPGILARST 1098
            T LVTKK NTLLGRK+ F    ++ +AVR+  RS  K I+V GCQA S+   T TPG++A  T
Sbjct:  286 TFLVTKKPNTLLGRKHIFQAAGDILHAVRSASRSELKAIKVEGCQANSKIVATETPGVVATYT 348
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1045.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWS2_ECTSI6.550e-1527.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5L1G9_9PHAE1.080e-1052.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ3_ECTSI2.340e-1055.77Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3S2_ECTSI4.300e-1055.77Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K4U5_9PHAE3.020e-954.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXK3_9PHAE3.080e-951.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFD4_9PHAE4.830e-652.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1045contigD-herbacea_F_contig1045:27687..30395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1701
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1045.510.1prot_D-herbacea_F_contig1045.510.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1045 28662..30382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.8514783-UTR-D-herbacea_F_contig1045:27686..282761622927458.8514783-UTR-D-herbacea_F_contig1045:27686..28276Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 27687..28276 -
1690790181.5837145-UTR-D-herbacea_F_contig1045:27686..282761690790181.5837145-UTR-D-herbacea_F_contig1045:27686..28276Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 27687..28276 -
1622927458.8642194-UTR-D-herbacea_F_contig1045:28469..286611622927458.8642194-UTR-D-herbacea_F_contig1045:28469..28661Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 28470..28661 -
1690790181.591903-UTR-D-herbacea_F_contig1045:28469..286611690790181.591903-UTR-D-herbacea_F_contig1045:28469..28661Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 28470..28661 -
1622927458.918618-UTR-D-herbacea_F_contig1045:30382..303951622927458.918618-UTR-D-herbacea_F_contig1045:30382..30395Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 30383..30395 -
1690790181.6232955-UTR-D-herbacea_F_contig1045:30382..303951690790181.6232955-UTR-D-herbacea_F_contig1045:30382..30395Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1045 30383..30395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.8769479-CDS-D-herbacea_F_contig1045:28661..287051622927458.8769479-CDS-D-herbacea_F_contig1045:28661..28705Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 28662..28705 -
1690790181.6015284-CDS-D-herbacea_F_contig1045:28661..287051690790181.6015284-CDS-D-herbacea_F_contig1045:28661..28705Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 28662..28705 -
1622927458.8909352-CDS-D-herbacea_F_contig1045:29374..298021622927458.8909352-CDS-D-herbacea_F_contig1045:29374..29802Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 29375..29802 -
1690790181.6087725-CDS-D-herbacea_F_contig1045:29374..298021690790181.6087725-CDS-D-herbacea_F_contig1045:29374..29802Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 29375..29802 -
1622927458.907325-CDS-D-herbacea_F_contig1045:29948..303821622927458.907325-CDS-D-herbacea_F_contig1045:29948..30382Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 29949..30382 -
1690790181.616109-CDS-D-herbacea_F_contig1045:29948..303821690790181.616109-CDS-D-herbacea_F_contig1045:29948..30382Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1045 29949..30382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1045.510.1

>prot_D-herbacea_F_contig1045.510.1 ID=prot_D-herbacea_F_contig1045.510.1|Name=mRNA_D-herbacea_F_contig1045.510.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=302bp
MSRSSKSSIKTLVEEVVDAACADFRKRGTLPLDDIRDVAYTSVLSHPICK
AALEEKCNLAVISSYTSIGESISTVWNLMSKSGNVSRDHVWPVRRAILAC
FAGPRIAYLWSGEISSWRNVFSNAFREAKTRRAAALDHDDLQQLLSRKRQ
RDALARISSSICNRTQPSPCATKTKHDYAAGNHVHRTDNCGKQLKCKFHF
GWVTDSGVKVRSDDGESSERDIHIEHHYFGACQWKIISWESRRSEISVRQ
AWQGRQLHASGAYGGRAPELRGEPETRQRERAVANYEDMWQRARGAKRIP
C*
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mRNA from alignment at D-herbacea_F_contig1045:27687..30395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1045.510.1 ID=mRNA_D-herbacea_F_contig1045.510.1|Name=mRNA_D-herbacea_F_contig1045.510.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2709bp|location=Sequence derived from alignment at D-herbacea_F_contig1045:27687..30395- (Desmarestia herbacea DmunF female)
GTCGACGGAAAAAATGTCTCGATCCTCGAAATCAAGCATTAAGACACTCG
TCGAAGAAGTCGTCGATGCAGCGTGTGCGGACTTTCGGAAACGAGGAACT
TTGCCGCTCGACGACATCCGCGACGTCGCTTACACGTCTGTCCTCTCCCA
CCCCATCTGCAAAGCGGCCCTAGAAGAAAAATGCAATTTAGCCGTGATAT
CATCGTACACATCGATTGGCGAAAGTATAAGCACTGTCTGGAATTTAATG
TCCAAGTCGGGTAACGTATCAAGGGATCATGTTTGGCCCGTGCGACGGGC
CATACTGGCTTGCTTTGCCGGCCCGAGGATAGCCTATCTATGGAGCGGCG
AAATCTCTTCTTGGAGGAACGTGTTTTCAAACGCTTTTCGTGAGGCGAAA
ACAAGGCGAGCTGCAGCACTGGACCATGATGATCTACAACAACTCTTGTG
AGTACACATTGGTTTCTGGGTTGTGTAGGGCCCTCTGGCACTGGCACTAC
TATACCAACCTAACGCTGAGATTCATATTGCACAGGCTAAAGTCTCCAAC
GCGTGTGCTCGGTCTTCTGTCCCTTGACAAAACGTACGCCCAGGTCCAGG
AAACGACAGCGAGACGCGTTGGCGAGAATATCGTCGAGTATTTGCAATCG
TACACAGCCGTCTCCGTGCGCGACAAAGACGAAGCACGATTACGCAGCTG
GCAACCATGTTCACCGAACCGACAATTGCGGCAAGCAGTTAAAGTGTAAG
TTTCACTTTGGCTGGGTGACAGACAGCGGGGTGAAGGTGCGCAGCGATGA
CGGAGAGTCTAGCGAACGTGACATTCACATCGAACACCACTACTTCGGTG
CGTGTCAATGGAAAATCATATCTTGGGAGAGTCGCAGGTCCGAGATATCT
GTGCGACAAGCTTGGCAAGGACGTCAACTTCATGCTTCGGGAGCCTACGG
AGGAAGAGCGCCAGAACTTCGAGGCGAACCTGAAACACGACAGAGGGAGA
GGGCAGTTGCTAATTACGAAGGTGAGAGAGTGAGAGAGTGAGAGAGTGAG
CGCTGAAAGAGAGAGTGCTTGTACGTGGTCTTTGAGAAACGGCCATTCGC
ACGAGTGGCTTCTTAAAGCCCTTGCTTGCACGTAAGTTCCTCGTGTGTAA
TCTGTAAGAAACGGCCATTCGCACGAGAGTGGCCTTTACGAGCGCGGTGG
TCTGTATCCGTAAACAAAAATCGACGGTTGCTTGTACGAAGACTAAACGG
CCATTCGCACGAGTGGCTTCATTGAGGCCCTTGCTTGTACATACGTTTTA
CTCGTCGCGCGTAGTCTGTTTGAGAAACGGCCATTCGCACGAGTGGCTTA
CTTATTAAGGCCCTTGCATATACGCAAGTTACTCTTGTGTCGTAGTCGTG
TGTACTCTGGTTTTGAGAAACGGCCACTCGCACGAGTTGCTTACTTATTT
AGACCCTTGCTTGTGTACATGAGTTACTCGTGTATAATCTGTAAGAAACC
GCCATTCGCACGAGGGCCCTTTACGAGCGCGGTCTGTACGTTATAGTAGT
TTCCTTAGAGAATAACATCGACTTGTACATAATTTCGTTCCACTCTACTG
CCTATATGACAACTCCTCAGACACCCCCGTTTGTCCTCCCACTTCCCTCT
GCTGCGACCGTTTTTTTCCTCGATTTCGGGTGCGGCACGGACATGTGGCA
AAGGGCTCGCGGAGCAAAACGAATACCTTGCTAGTCACCAAAAAGGCTAA
CACGCTTCTCGGCAGGAAGTACAAGTTCGTTGGAAACGATGAGGTGACAA
ATGCTGTGCGCGCCGGTGTTCGCTCCGCGACGAAAGAGATCGAGGTTGTC
GGTTGCCAGGCCATCAGCAGGACAGCACCAACCGGTACTCCAGGGATCCT
CGCGCGGTCTACGCACTGTCAACCTGGTATGCCTACTACGTATGCCTGGT
TGTGCCATTCGATTTTGGCGATAACCGTTGCCAGAAATGTTTGCTGTAGG
CGCATCATGTACGCACCCCCGCCTGATCTTTTTGCAAATTACATTTCCAT
GCCCCCCCCCCCCTTGTTTTCTGTTCCGCACATTACGTATCGACGCCCTC
CCCCCTTTTCCCGTCGCAGTTGTGGCTCTCGTCTGCGCAACGAGCCGGAG
AAGTGCCCTCTAATCAATAAAGCCAATGTTATAGCGCCCACAGAGTGGTC
AAGGAGGGGGGCAGTCGGGGGGTGTCCGATAGGGGGCTCGAAAAGTACGT
TAGGTTAGTTAGGGTGCGTTGGGGTTAGTTATATGCGTGCGGCGACGTGG
GGACTACTACGGAAGTAGGTGTGTGTATAATCGATGTAACGTATTGCATA
CAAGAGTTGAGCGTTGGGGGGCATATCGGGCCATCAAACGGGTGTTGTGT
GTGGATTTGTTGTGTGCGTTATAGCGATATACTTATTCTCGCCTACGCCG
GGGGGCATATCGTGGCATCAAACGGGTGTTGTGTGTGGGTTTATTGTGTG
TGTAATACTTATATATATACTTATTCTCGCCTACACCTACTTGCATGCTC
GAGCGGTGGGGGGCATATAGGGGCGTCAAACGGGTGTGGTGTGTTGGTTT
GTTGGTGTATTGGTTTGTTGTGTGTGCGTAATACCTATATACTTGTTCTC
GCCTACACCTCCTGCCTGCGGGCGTCCGTGAACCAAAACAGCCCAGAAAG
TGATACCCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1045:27687..30395-

>mRNA_D-herbacea_F_contig1045.510.1 ID=mRNA_D-herbacea_F_contig1045.510.1|Name=mRNA_D-herbacea_F_contig1045.510.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1812bp|location=Sequence derived from alignment at D-herbacea_F_contig1045:27687..30395- (Desmarestia herbacea DmunF female)
ATGTCTCGATCCTCGAAATCAAGCATTAAGACACTCGTCGAAGAAGTCGT
CGATGCAGCGTGTGCGGACTTTCGGAAACGAGGAACTTTGCCGCTCGACG
ACATCCGCGACGTCGCTTACACGTCTGTCCTCTCCCACCCCATCTGCAAA
GCGGCCCTAGAAGAAAAATGCAATTTAGCCGTGATATCATCGTACACATC
GATTGGCGAAAGTATAAGCACTGTCTGGAATTTAATGTCCAAGTCGGGTA
ACGTATCAAGGGATCATGTTTGGCCCGTGCGACGGGCCATACTGGCTTGC
TTTGCCGGCCCGAGGATAGCCTATCTATGGAGCGGCGAAATCTCTTCTTG
GAGGAACGTGTTTTCAAACGCTTTTCGTGAGGCGAAAACAAGGCGAGCTG
CAGCACTGGACCATGATGATCTACAACAACTCTTATGTCTCGATCCTCGA
AATCAAGCATTAAGACACTCGTCGAAGAAGTCGTCGATGCAGCGTGTGCG
GACTTTCGGAAACGAGGAACTTTGCCGCTCGACGACATCCGCGACGTCGC
TTACACGTCTGTCCTCTCCCACCCCATCTGCAAAGCGGCCCTAGAAGAAA
AATGCAATTTAGCCGTGATATCATCGTACACATCGATTGGCGAAAGTATA
AGCACTGTCTGGAATTTAATGTCCAAGTCGGGTAACGTATCAAGGGATCA
TGTTTGGCCCGTGCGACGGGCCATACTGGCTTGCTTTGCCGGCCCGAGGA
TAGCCTATCTATGGAGCGGCGAAATCTCTTCTTGGAGGAACGTGTTTTCA
AACGCTTTTCGTGAGGCGAAAACAAGGCGAGCTGCAGCACTGGACCATGA
TGATCTACAACAACTCTTGTCCAGGAAACGACAGCGAGACGCGTTGGCGA
GAATATCGTCGAGTATTTGCAATCGTACACAGCCGTCTCCGTGCGCGACA
AAGACGAAGCACGATTACGCAGCTGGCAACCATGTTCACCGAACCGACAA
TTGCGGCAAGCAGTTAAAGTGTAAGTTTCACTTTGGCTGGGTGACAGACA
GCGGGGTGAAGGTGCGCAGCGATGACGGAGAGTCTAGCGAACGTGACATT
CACATCGAACACCACTACTTCGGTGCGTGTCAATGGAAAATCATATCTTG
GGAGAGTCGCAGGTCCGAGATATCTGTGCGACAAGCTTGGCAAGGACGTC
AACTTCATGCTTCGGGAGCCTACGGAGGAAGAGCGCCAGAACTTCGAGGC
GAACCTGAAACACGACAGAGGGAGAGGGCAGTTGCTAATTACGAAGGTCC
AGGAAACGACAGCGAGACGCGTTGGCGAGAATATCGTCGAGTATTTGCAA
TCGTACACAGCCGTCTCCGTGCGCGACAAAGACGAAGCACGATTACGCAG
CTGGCAACCATGTTCACCGAACCGACAATTGCGGCAAGCAGTTAAAGTGT
AAGTTTCACTTTGGCTGGGTGACAGACAGCGGGGTGAAGGTGCGCAGCGA
TGACGGAGAGTCTAGCGAACGTGACATTCACATCGAACACCACTACTTCG
GTGCGTGTCAATGGAAAATCATATCTTGGGAGAGTCGCAGGTCCGAGATA
TCTGTGCGACAAGCTTGGCAAGGACGTCAACTTCATGCTTCGGGAGCCTA
CGGAGGAAGAGCGCCAGAACTTCGAGGCGAACCTGAAACACGACAGAGGG
AGAGGGCAGTTGCTAATTACGAAGACATGTGGCAAAGGGCTCGCGGAGCA
AAACGAATACCTTGCTAGACATGTGGCAAAGGGCTCGCGGAGCAAAACGA
ATACCTTGCTAG
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