mRNA_D-herbacea_F_contig1044.507.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1044.507.1
Unique NamemRNA_D-herbacea_F_contig1044.507.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1044.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1044contigD-herbacea_F_contig1044:2838..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927458.571049-CDS-D-herbacea_F_contig1044:2837..32451622927458.571049-CDS-D-herbacea_F_contig1044:2837..3245Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 2838..3245 +
1690790181.4474518-CDS-D-herbacea_F_contig1044:2837..32451690790181.4474518-CDS-D-herbacea_F_contig1044:2837..3245Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1044 2838..3245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1044.507.1prot_D-herbacea_F_contig1044.507.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1044 2838..3245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1044.507.1

>prot_D-herbacea_F_contig1044.507.1 ID=prot_D-herbacea_F_contig1044.507.1|Name=mRNA_D-herbacea_F_contig1044.507.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=136bp
LRTGFEFDFEAQDQEAPSLGEGAEGAGTPMTSGLRGATVASTTASNPFAP
VNRDDNVSWLLDFLRSDTGADTSGETVETERSTADSGKEETDADEAPLGL
MATARNSEPGDLRRMFVGNVLLTGDDIAVRAAEFDL
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mRNA from alignment at D-herbacea_F_contig1044:2838..3247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1044.507.1 ID=mRNA_D-herbacea_F_contig1044.507.1|Name=mRNA_D-herbacea_F_contig1044.507.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=410bp|location=Sequence derived from alignment at D-herbacea_F_contig1044:2838..3247+ (Desmarestia herbacea DmunF female)
TTACGCACAGGGTTTGAGTTTGATTTTGAGGCGCAAGACCAGGAGGCGCC
GTCATTGGGGGAAGGGGCAGAGGGTGCAGGAACACCCATGACGAGCGGAC
TTAGAGGAGCAACCGTGGCCTCTACTACTGCAAGCAACCCGTTCGCCCCA
GTCAACCGTGACGATAACGTGTCTTGGCTGCTGGACTTTTTGCGCTCTGA
CACGGGCGCTGACACAAGCGGTGAAACCGTCGAAACTGAGAGGTCGACGG
CAGACTCTGGCAAAGAGGAGACAGATGCAGATGAGGCCCCCCTCGGGCTG
ATGGCGACAGCTCGGAACAGTGAACCTGGCGACCTCAGGAGAATGTTCGT
TGGCAACGTTCTTCTCACGGGCGACGACATCGCGGTGCGGGCGGCGGAGT
TCGACCTGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1044:2838..3247+

>mRNA_D-herbacea_F_contig1044.507.1 ID=mRNA_D-herbacea_F_contig1044.507.1|Name=mRNA_D-herbacea_F_contig1044.507.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=816bp|location=Sequence derived from alignment at D-herbacea_F_contig1044:2838..3247+ (Desmarestia herbacea DmunF female)
TTACGCACAGGGTTTGAGTTTGATTTTGAGGCGCAAGACCAGGAGGCGCC
GTCATTGGGGGAAGGGGCAGAGGGTGCAGGAACACCCATGACGAGCGGAC
TTAGAGGAGCAACCGTGGCCTCTACTACTGCAAGCAACCCGTTCGCCCCA
GTCAACCGTGACGATAACGTGTCTTGGCTGCTGGACTTTTTGCGCTCTGA
CACGGGCGCTGACACAAGCGGTGAAACCGTCGAAACTGAGAGGTCGACGG
CAGACTCTGGCAAAGAGGAGACAGATGCAGATGAGGCCCCCCTCGGGCTG
ATGGCGACAGCTCGGAACAGTGAACCTGGCGACCTCAGGAGAATGTTCGT
TGGCAACGTTCTTCTCACGGGCGACGACATCGCGGTGCGGGCGGCGGAGT
TCGACCTGTTACGCACAGGGTTTGAGTTTGATTTTGAGGCGCAAGACCAG
GAGGCGCCGTCATTGGGGGAAGGGGCAGAGGGTGCAGGAACACCCATGAC
GAGCGGACTTAGAGGAGCAACCGTGGCCTCTACTACTGCAAGCAACCCGT
TCGCCCCAGTCAACCGTGACGATAACGTGTCTTGGCTGCTGGACTTTTTG
CGCTCTGACACGGGCGCTGACACAAGCGGTGAAACCGTCGAAACTGAGAG
GTCGACGGCAGACTCTGGCAAAGAGGAGACAGATGCAGATGAGGCCCCCC
TCGGGCTGATGGCGACAGCTCGGAACAGTGAACCTGGCGACCTCAGGAGA
ATGTTCGTTGGCAACGTTCTTCTCACGGGCGACGACATCGCGGTGCGGGC
GGCGGAGTTCGACCTG
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