mRNA_D-herbacea_F_contig1040.503.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1040.503.1
Unique NamemRNA_D-herbacea_F_contig1040.503.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1040.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1040contigD-herbacea_F_contig1040:76067..76474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927457.3469374-UTR-D-herbacea_F_contig1040:76066..760871622927457.3469374-UTR-D-herbacea_F_contig1040:76066..76087Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1040 76067..76087 +
1690790180.6572304-UTR-D-herbacea_F_contig1040:76066..760871690790180.6572304-UTR-D-herbacea_F_contig1040:76066..76087Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1040 76067..76087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927457.3608277-CDS-D-herbacea_F_contig1040:76087..764741622927457.3608277-CDS-D-herbacea_F_contig1040:76087..76474Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1040 76088..76474 +
1690790180.6650496-CDS-D-herbacea_F_contig1040:76087..764741690790180.6650496-CDS-D-herbacea_F_contig1040:76087..76474Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1040 76088..76474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1040.503.1prot_D-herbacea_F_contig1040.503.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1040 76088..76474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1040.503.1

>prot_D-herbacea_F_contig1040.503.1 ID=prot_D-herbacea_F_contig1040.503.1|Name=mRNA_D-herbacea_F_contig1040.503.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=129bp
MTIVAEATAAAREAARVATVQHEYRHVDFRKIERITTMPFASALSESDSP
SWVPGWERPLRKCFLKAIASDKKDSPSLVILAENVFDQVDAELAAGVSGP
EALQLLLRLLSGHFDHGDRNAAYKTLQAF
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mRNA from alignment at D-herbacea_F_contig1040:76067..76474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1040.503.1 ID=mRNA_D-herbacea_F_contig1040.503.1|Name=mRNA_D-herbacea_F_contig1040.503.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=408bp|location=Sequence derived from alignment at D-herbacea_F_contig1040:76067..76474+ (Desmarestia herbacea DmunF female)
CGGCTCGTCCACTGTCAATGGATGACCATCGTGGCAGAAGCGACTGCAGC
TGCGCGTGAAGCAGCTCGCGTCGCAACAGTGCAGCATGAGTACCGCCACG
TTGATTTCAGGAAAATCGAACGCATCACCACCATGCCCTTCGCGTCAGCC
CTCAGTGAATCTGATTCTCCATCTTGGGTACCCGGTTGGGAGCGCCCCCT
TCGCAAATGTTTTTTGAAAGCCATTGCGTCTGACAAAAAGGACTCCCCTT
CTCTCGTCATTCTTGCTGAAAACGTTTTTGATCAGGTCGACGCCGAGCTA
GCCGCTGGGGTCAGCGGTCCGGAGGCCTTACAGCTGCTACTGCGACTTCT
CAGCGGACACTTCGACCATGGCGACCGCAACGCTGCTTACAAGACGCTGC
AAGCGTTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1040:76067..76474+

>mRNA_D-herbacea_F_contig1040.503.1 ID=mRNA_D-herbacea_F_contig1040.503.1|Name=mRNA_D-herbacea_F_contig1040.503.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=774bp|location=Sequence derived from alignment at D-herbacea_F_contig1040:76067..76474+ (Desmarestia herbacea DmunF female)
ATGACCATCGTGGCAGAAGCGACTGCAGCTGCGCGTGAAGCAGCTCGCGT
CGCAACAGTGCAGCATGAGTACCGCCACGTTGATTTCAGGAAAATCGAAC
GCATCACCACCATGCCCTTCGCGTCAGCCCTCAGTGAATCTGATTCTCCA
TCTTGGGTACCCGGTTGGGAGCGCCCCCTTCGCAAATGTTTTTTGAAAGC
CATTGCGTCTGACAAAAAGGACTCCCCTTCTCTCGTCATTCTTGCTGAAA
ACGTTTTTGATCAGGTCGACGCCGAGCTAGCCGCTGGGGTCAGCGGTCCG
GAGGCCTTACAGCTGCTACTGCGACTTCTCAGCGGACACTTCGACCATGG
CGACCGCAACGCTGCTTACAAGACGCTGCAAGCGTTCATGACCATCGTGG
CAGAAGCGACTGCAGCTGCGCGTGAAGCAGCTCGCGTCGCAACAGTGCAG
CATGAGTACCGCCACGTTGATTTCAGGAAAATCGAACGCATCACCACCAT
GCCCTTCGCGTCAGCCCTCAGTGAATCTGATTCTCCATCTTGGGTACCCG
GTTGGGAGCGCCCCCTTCGCAAATGTTTTTTGAAAGCCATTGCGTCTGAC
AAAAAGGACTCCCCTTCTCTCGTCATTCTTGCTGAAAACGTTTTTGATCA
GGTCGACGCCGAGCTAGCCGCTGGGGTCAGCGGTCCGGAGGCCTTACAGC
TGCTACTGCGACTTCTCAGCGGACACTTCGACCATGGCGACCGCAACGCT
GCTTACAAGACGCTGCAAGCGTTC
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