mRNA_D-herbacea_F_contig104.500.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: D7G486_ECTSI (Mitochondrial TOM complex subunit, Tom40 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G486_ECTSI) HSP 1 Score: 504 bits (1299), Expect = 6.400e-169 Identity = 261/348 (75.00%), Postives = 297/348 (85.34%), Query Frame = 1
Query: 445 SVARSPVSWTEVLGSVRVGRVAFADAAAVEAV--------GDDAASFSPLEDGDKPELIKRADEQAEQ-KGQLRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQGALTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQQGKNEVLQGTAIYSGETCAGQVSFGTAPTEVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQLGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLALTCGQ 1461
S+ S +LGSV + R+A AD AA AV AA+ S LEDGDKPE I+RADEQA Q + QLRRPAQFADQF EVS LT VHSFEGFRLDMSKAVTPTFFT+HN+FFG+PQFP+GHYQG LTVVGE +TMVRASMDA+CNVS+D HAPLG+PGL GK ++ QGKN+V+QGTA+Y G+TC+GQ+S GT PTE+SYNQA+TP+LSMGGQGQFS+AQQAVGLLYGFKY+TPSWAVLGRLIGGGANVVTAQY+RRVVPGRVTLGAEYQAQLG+ SQM +GAEF LKQSKMSASVDSNGKVDS LE++ GTFPTLPVT TISSSL+H+E+K FGLALTCGQ
Sbjct: 95 SIEALEASLQGLLGSVPLVRIAHADGAAAVAVEAAXXXXXXXXAAAVSELEDGDKPEYIQRADEQAAQMRQQLRRPAQFADQFLEVSQLTQVHSFEGFRLDMSKAVTPTFFTSHNVFFGNPQFPSGHYQGTLTVVGESETMVRASMDADCNVSMDAHAPLGMPGLAGKLTVHQGKNDVIQGTALYHGDTCSGQISLGTGPTEISYNQAVTPHLSMGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLGAGSQMMVGAEFQLKQSKMSASVDSNGKVDSTLELKCGTFPTLPVTLTISSSLDHSEDKQTFGLALTCGQ 442
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A836CIJ7_9STRA (Eukaryotic porin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ7_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.710e-25 Identity = 101/307 (32.90%), Postives = 150/307 (48.86%), Query Frame = 1
Query: 562 SPLEDGDK----PELIKRADEQAEQKGQ-LRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGH-YQGALTVVGEHDTMV---RASMDAECNVSVDFHAPLGLPGLTGKASLQQGKNEVLQGTAIYSGETCAGQVSFGTAPTEVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQ--LGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLAL 1449
+P ED + P L+++ADE K + + P F DQ+ V L +++G R+D+ +A+TPTFF+A++ GS G+ TVV E T V R S D + + V P+G + GK G + +Q TA + A QV+ G S+NQA+T L+ G + A + G +Y T W G ++ G ++ QY R V RV LGAE S +++GAEF LKQSK+ +V+ +G VD +EVRF P V+F + L H E+K FG +
Sbjct: 78 APAEDAQQLEATPTLLEQADEAVLSKAETVTTPPLFTDQYNRVKGLVQADTWDGVRVDIQRALTPTFFSAYSGLLGSSAVQGGNALTFTSTVVSEDQTRVLMGRMSKDGDLDGRV--FCPIG--NILGKVQFTLGAQDTIQATAEMKDSSSACQVTAGLGTFGFSFNQALTARLTAGMDCTYHAQMGDAPISVGGQYQTRDWT--GNVLYG-PGMMQLQYARHVNE-RVQLGAELALNPLRPQESAVAVGAEFNLKQSKLHFAVNGSGTVDGNIEVRF--LPMASVSF--AGQLNHVEDKHRFGFGM 372
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A6V1K0T5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K0T5_HETAK) HSP 1 Score: 107 bits (266), Expect = 1.710e-21 Identity = 85/305 (27.87%), Postives = 139/305 (45.57%), Query Frame = 1
Query: 568 LEDGDKPELIKRAD---EQAEQKGQLRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNG-HYQGALTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQQGKNEVLQGTAIYSGETCAGQVSFGTAPTE---VSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQ-LGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLALTCG 1458
LE +KPEL+K+A+ + AE+K + P +F E +T +++G R +++K VTP+F H + G+ P HY TV + D ++ D + N+ H K + G+ + Y+G + Q P +SY QA+TP + GG+ + + +Y P + L+ V Y+R+V P RV L AE Q L SQ++ GAEF LKQSK+ +D +GK+ + +E P +TF S + H+++ FG ++ G
Sbjct: 32 LETEEKPELVKQAEAAEKGAEEKIRCPPPLEFLPM--EFKRITQPDTYDGVRFELNKPVTPSFGINHMFWLGTQMIPTHVHYTYGATVAEDSDRLIMGRYDLQGNLDSRIHYAWNKQ-FNSKFLMGLGQQDSASADLSYAGASATWQAKAAALPAPQLALSYVQALTPRWAAGGEAVMNLKANRTLMSGVCRYANPHYTA-AVLVAQNGEAVACHYLRQVAPNRVALAAELVLQPLALESQVTFGAEFSLKQSKLITCIDGSGKISTLVETMLS--PACKLTF--SGEMLHSKDVYKFGYGMSIG 328
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: W7TU84_9STRA (Mitochondrial protein translocase family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU84_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.810e-21 Identity = 94/292 (32.19%), Postives = 138/292 (47.26%), Query Frame = 1
Query: 586 PELIKRADEQAEQKGQLRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGS--PQFP-NGHYQGALTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGK-ASLQ-QGKNEVLQGTAIYSGETCAGQVSFGTAPT-EVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQ-LGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFG 1440
P L+K+A+E+ + QL+ P F + L++V SFEGFRL++ K VTP F+ AH+ G PQ N Y + VV + ++ A M ++ H LG L ASLQ + Q A G + P SY Q+ITP L++GG F A+ G KY P W + L G + QY++ V PGR+ L A+ L SQ +GAE +KQS+ +VD+ GK+ + LE R P VT +S ++ +++ FG
Sbjct: 61 PALVKQAEEERRKVAQLKNPGSFEKLIEDGKRLSSVDSFEGFRLEVQKMVTPHFYLAHSFMLGVKLPQVDTNALYDFSTHVVLPGNQLIMARMGHAGSMDGRIHFGLGENTLVKVIASLQPNAAKDTYQVDAERHGRDHSLTFRLSKGPQLYASYLQSITPGLALGGDTLFDFAEGGGVFSLGGKYTGPDWVGVAMLAQYG-QICLLQYIKHVSPGRMALVADLVLNPLTLDSQTVLGAEVNMKQSRFLTTVDNGGKIAALLEAR--VVPNA-VTLLLSGEVDGVKDEYKFG 348
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A7S4QT36_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QT36_9STRA) HSP 1 Score: 105 bits (261), Expect = 7.150e-21 Identity = 83/286 (29.02%), Postives = 136/286 (47.55%), Query Frame = 1
Query: 682 LTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQGA--LTVVGEHDTMVRASMDAECNVSVDFHAPLGLPG--LTGKASL---QQGKNEVLQGTAIYSGETCAGQVSFGTAPTEVSYN----QAITPNLSMGGQGQFSAAQQAVGLLYGFKY---------------DTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQLGSA-SQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLALTCG 1458
L ++ +++GFRLD++K ++P H+ + G+ P+G + LT V + + A +D E SVD L G +T K + +G+ + L G + G T G + +G+ + Y Q+IT N GG+G + +A Q++ Y KY + P+ ++ +++ Y R V P RVTLGAE Q Q S S + +G EF +SK+ VD +G++ S LE + G P P + T ++ L+H +N FG L G
Sbjct: 43 LVSIDTYDGFRLDINKQLSPFMAVVHSFWLGTSMLPDGRNKTYTFLTQVADEAGLCMARVDLE-RQSVDGRIHRALLGGLVTSKVQVGVSAEGQTDQLLGELDFGGATWCGNLKYGSMGGGLVYGCNYIQSITSNWVAGGEGMYISANQSLLSNYMMKYTMEAPTIETSLDKEEEKPTSTMIASY-NSAQSLLCFNYKRVVTPKRVTLGAELQCQPASLESAVMVGGEFAFTRSKVGVVVDGSGRIQSTLETKLGREPGSP-SLTFAAELDHGKNVMRFGYGLNIG 325
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A7S1GMA5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMA5_CYCTE) HSP 1 Score: 95.5 bits (236), Expect = 2.180e-17 Identity = 83/313 (26.52%), Postives = 142/313 (45.37%), Query Frame = 1
Query: 634 LRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQGA--LTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQQGKNEVLQG------TAI-YSGETCAGQVSFGTAPTE----VSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWA------------------------VLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQLGS--ASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTF--PTLPVTFTISSSLEHAENKAAFGLAL 1449
+ P F + L + +F+GFR D++K ++P H+ + G+ P+G + +T V ++ A +D + SVD + G A +Q G + +G T + +G T + + +G+A ++Y Q+ITP L+MGG+G + +A Q++ Y +Y P+ + + V+ Y R V P RV LGAE Q S ++Q+ +GAEF L +SK+SA VD +G+V S +E + G PTL ++ ++ ++K FG L
Sbjct: 51 IPNPGPFEQASMDAKRLVQLDTFDGFRFDINKQLSPYMAVIHSFWLGTSMLPDGRNKSYTFMTQVANETGLLLARVDFDRG-SVDGRIHRAILGGLAMAKIQMGVSGAAEGHNDQCMTEVDLNGMTWSANLKYGSALGGGLYGINYFQSITPRLAMGGEGIYISANQSLMSNYTLRYTMPAKSGDDADDNDAADKKGVVVSSERASSTMVASYNSQQGAVSLNYKRNVTPNRVALGAELQFSPFSPQSAQVVVGAEFKLTRSKVSACVDGSGRVQSLVEAKLGRIGAPTLQ----LAGEMDFGQDKMKFGYGL 358
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A448ZCA8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCA8_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.890e-17 Identity = 88/300 (29.33%), Postives = 131/300 (43.67%), Query Frame = 1
Query: 631 QLRRPAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQGA--LTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQQGKN----------EVLQGTAIYSGETCAGQVSFGTAPTEVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKY------------DTPSWAVLGRLIGGGANVV--TAQYVRRVVPGRVTLGAEYQAQ-LGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLAL 1449
Q+ P ++ L + + +GFR D++K ++P H+ + G+ P+G + + V + + + +D + SVD L G A LQ G + EV ++G G + G A S++Q ITPNLSMGG G F AA + Y KY + PS AV + G + + T Y R V P RVTLGAE L S +G EF +SK+ +VD N K+ S LE G P P ++S+ L+H ++ FG L
Sbjct: 61 QMMNPGPLEQAPADMKRLVQLDTHDGFRCDINKQISPYLAVVHSFWLGTNMLPDGQKRTYTWMAQVADESSFCFSRLDPSQS-SVDGRIIKTLLGGIATAKLQLGLSAEGQADQCLLEVDVNAMSWNGNLKYGSMG-GGAVYGCSFHQGITPNLSMGGDGMFVAANGNMMSNYLLKYSFGASGESTSANEPPSSAVCLQFAPSGPSPMPLTLNYKRTVTPKRVTLGAELSCDPLSMQSHCVLGGEFKFSRSKLHVAVDGNLKMQSLLETPLGKEPGQP-RLSLSAELDHLRDEMKFGYGL 357
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A1Z5KSU7_FISSO (Mitochondrial import receptor subunit TOM40 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSU7_FISSO) HSP 1 Score: 95.1 bits (235), Expect = 3.040e-17 Identity = 81/288 (28.12%), Postives = 126/288 (43.75%), Query Frame = 1
Query: 682 LTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNG-HYQGALTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQ-----QGKNEVLQGTAIYSGETCAGQVSFGTAPTEVSYN----QAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPS-----WAVLGRLIGG---------------GANVVTAQYVRRVVPGRVTLGAEYQAQ-LGSASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLALT 1452
L + +F+GFR D++K ++P H+ G+ P+ +T V + ++ +D SVD + G A LQ G+ + + G T G + +G+ + Y Q+ITP L MGG+G + AA Q++ Y KY P+ + L + G N ++ Y R V P RVTLGAE Q L SQ+ +GAEF L +S+ + VD + S LE + G P P T S+ ++H + FG +T
Sbjct: 77 LVQLDTFDGFRCDINKQLSPYMAVVHSFLLGTTSLPDRTSTYSFVTQVADEQGILMTRVDPG-RKSVDGRVHRAVLGGLAMAKLQLGLSPDGQQDQALAELDFGGLTWTGNLKYGSMAGAIVYGCNYLQSITPQLQMGGEGMYIAANQSLISNYTLKYTIPASTGEETSALPAVSKGPERKGSSMMCVNYNTAQNALSLNYKRVVTPNRVTLGAELQCSPLTLESQVLLGAEFKLHRSRFAICVDGGLRTQSILEAKLGVAPGSP-TLNFSADVDHLNDAMRFGYGIT 362
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A7S3PLP7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLP7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.840e-11 Identity = 72/281 (25.62%), Postives = 125/281 (44.48%), Query Frame = 1
Query: 643 PAQFADQFGEVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQ--GALTVVGEHDTMVRASMDAECNVSVDFHAPLGLPG-----LTGKASLQQGKNEVLQGTAIYSGETCAGQVSFGTAPT-EVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYDTPSWAVLGRLIGGGANVVTAQYVRRVVPGRVTLGAEYQAQLGS-ASQMSIGAEFVLKQSKMSASVDSNGKVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLALTCG 1458
P QF + + F+G R + +K + P F H+++ GS G+ G+ V+ E TM+ +D + + +H + P + S Q + + Q + +G A P +SY Q++TP ++MG +G + Q + KYD L G+ ++ YVR+V RVTL AE + L S S+M+ G EF+L+QSK+S + + G + + ++ P + F + L+HA ++ FG + G
Sbjct: 110 PGQFDKADSDAIRVLKPDIFDGCRFEHNKMLGPAFTVNHSLWLGSHMIQGGNNYNFGSTVVLNEGKTMLLGRLDPDGRLDAQWHQEILQPQKIISRVQSSISSSQ-EQSMTQASLEVNGIDYASTFKLTKGPMFGLSYFQSVTPKIAMGAEGFYHHGQGVSHVFARGKYDNGKDIATATLTTMGS--LSTNYVRKVND-RVTLAAELEVALDSYQSRMNFGYEFMLRQSKISGVISTEGVIQT--QITEAIMPGFAIIF--NGILDHASDQHRFGYGVQIG 382
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Match: A0A7S2YIH8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YIH8_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.820e-11 Identity = 90/323 (27.86%), Postives = 127/323 (39.32%), Query Frame = 1
Query: 670 EVSNLTAVHSFEGFRLDMSKAVTPTFFTAHNIFFGSPQFPNGHYQGA------------LTVVGEHDTMVRASMDAECNVSVDFHAPLGLPGLTGKASLQQGKN---------EVLQGTAIYSGETCAGQV--SFGTAPT-EVSYNQAITPNLSMGGQGQFSAAQQAVGLLYGFKYD--------------------------------TPSWAVLGRLIGG--GANVVTAQYVRRVVPGRVTLGAEYQ----AQLGSASQMSIGAEFVLKQSKMSASVDSNG-KVDSALEVRFGTFPTLPVTFTISSSLEHAENKAAFGLAL 1449
+ L A+ +FEGFR D++K ++P+ H+ +T VG+ D+ V S VD L G LQ + EV GT I S A S G P +Y QAITP L++GG+G + AAQ Y FKYD TP LIG + T Y R + P RVT+G+E A A ++ +GAEF L +SK+ S+D N K +S LE + G P P FT+S++++H FG ++
Sbjct: 77 DAKRLVALDTFEGFRCDVNKQMSPSMVVVHSFGLAPSSGXXXXXXXXXXXXXXXSSYTFITQVGD-DSGVFVSRVDTTRGGVDARVQRMLLGGLAMFKLQMSLSGSDNDTLLAEVDVGTMIPSFTWTANLKYGSMGGGPVWGANYWQAITPQLALGGEGMYIAAQGVPAAAYAFKYDFQAPLTPQEQQEVDAEKSKAASGPPPGHPGMPTPEAPGTSSLIGNYHSNGMATLNYRRVITPQRVTVGSELAFPLLAPFQEAPELLLGAEFNLTRSKLQWSLDCNTWKFNSVLETKLGMTPAAP-RFTLSAAVDHFNQDFKFGYSI 397 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig104.500.1 >prot_D-herbacea_F_contig104.500.1 ID=prot_D-herbacea_F_contig104.500.1|Name=mRNA_D-herbacea_F_contig104.500.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=414bp MASIPRFAAAAAGAAAAAAAAATELSSSSSSARRRVTARNQHVPSRREGGback to top mRNA from alignment at D-herbacea_F_contig104:856014..864497+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig104.500.1 ID=mRNA_D-herbacea_F_contig104.500.1|Name=mRNA_D-herbacea_F_contig104.500.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=8484bp|location=Sequence derived from alignment at D-herbacea_F_contig104:856014..864497+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig104:856014..864497+ >mRNA_D-herbacea_F_contig104.500.1 ID=mRNA_D-herbacea_F_contig104.500.1|Name=mRNA_D-herbacea_F_contig104.500.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2484bp|location=Sequence derived from alignment at D-herbacea_F_contig104:856014..864497+ (Desmarestia herbacea DmunF female)back to top |