mRNA_D-herbacea_F_contig104.498.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig104.498.1
Unique NamemRNA_D-herbacea_F_contig104.498.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig104contigD-herbacea_F_contig104:848537..849144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927448.3945456-UTR-D-herbacea_F_contig104:848536..8487631622927448.3945456-UTR-D-herbacea_F_contig104:848536..848763Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 848537..848763 +
1690790176.5851254-UTR-D-herbacea_F_contig104:848536..8487631690790176.5851254-UTR-D-herbacea_F_contig104:848536..848763Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 848537..848763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927448.415975-CDS-D-herbacea_F_contig104:848763..8491441622927448.415975-CDS-D-herbacea_F_contig104:848763..849144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 848764..849144 +
1690790176.5966916-CDS-D-herbacea_F_contig104:848763..8491441690790176.5966916-CDS-D-herbacea_F_contig104:848763..849144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 848764..849144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig104.498.1prot_D-herbacea_F_contig104.498.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig104 848764..849144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig104.498.1

>prot_D-herbacea_F_contig104.498.1 ID=prot_D-herbacea_F_contig104.498.1|Name=mRNA_D-herbacea_F_contig104.498.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=127bp
MPTKLSWNSHRRPMRCVARPCQEFPKVFDFCSSYSYWSDYQRFRLLAAWF
FRWFGMGEGLLMCCLPWSFQRLRRKSFPDGAPLLLLIETPPTLERSYRFC
YILHKKKNVCLSFIPFLFAFCGHHVSP
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mRNA from alignment at D-herbacea_F_contig104:848537..849144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig104.498.1 ID=mRNA_D-herbacea_F_contig104.498.1|Name=mRNA_D-herbacea_F_contig104.498.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=608bp|location=Sequence derived from alignment at D-herbacea_F_contig104:848537..849144+ (Desmarestia herbacea DmunF female)
TGTGTTTTGACACGCTTTCATTTTTTCTACCCTTTTGAGCAAGTCTCTGA
TTGTACACGATCGCACACACACACGTATATATTTACACATACTGCTGCAC
GAAGTACTGCTGTGTCTAATTATGTCATCAACCAACATGTGTTATCGGCT
TCGGACACTGCCGTCGAGTGCGCGAAGATTCCGGTGGGGGGGGGTTAATT
CCTTCTAGTCAGCCGTTGGGTACTATCATGCCAACCAAATTGTCCTGGAA
TAGCCATCGCCGCCCCATGAGATGCGTGGCCCGTCCTTGCCAGGAGTTCC
CAAAGGTTTTTGATTTTTGCTCCTCGTACTCGTATTGGTCAGACTACCAG
AGGTTTCGACTTCTGGCGGCGTGGTTTTTTCGTTGGTTCGGGATGGGGGA
GGGGCTACTCATGTGTTGCTTGCCTTGGTCGTTTCAACGTTTACGGCGCA
AATCCTTTCCAGACGGAGCACCATTGCTACTCCTAATAGAGACACCTCCA
ACACTTGAGCGCTCTTATCGTTTTTGCTATATATTACATAAAAAAAAAAA
CGTTTGCTTATCTTTTATCCCCTTTCTGTTTGCTTTTTGTGGTCATCATG
TATCTCCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig104:848537..849144+

>mRNA_D-herbacea_F_contig104.498.1 ID=mRNA_D-herbacea_F_contig104.498.1|Name=mRNA_D-herbacea_F_contig104.498.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=762bp|location=Sequence derived from alignment at D-herbacea_F_contig104:848537..849144+ (Desmarestia herbacea DmunF female)
ATGCCAACCAAATTGTCCTGGAATAGCCATCGCCGCCCCATGAGATGCGT
GGCCCGTCCTTGCCAGGAGTTCCCAAAGGTTTTTGATTTTTGCTCCTCGT
ACTCGTATTGGTCAGACTACCAGAGGTTTCGACTTCTGGCGGCGTGGTTT
TTTCGTTGGTTCGGGATGGGGGAGGGGCTACTCATGTGTTGCTTGCCTTG
GTCGTTTCAACGTTTACGGCGCAAATCCTTTCCAGACGGAGCACCATTGC
TACTCCTAATAGAGACACCTCCAACACTTGAGCGCTCTTATCGTTTTTGC
TATATATTACATAAAAAAAAAAACGTTTGCTTATCTTTTATCCCCTTTCT
GTTTGCTTTTTGTGGTCATCATGTATCTCCTATGCCAACCAAATTGTCCT
GGAATAGCCATCGCCGCCCCATGAGATGCGTGGCCCGTCCTTGCCAGGAG
TTCCCAAAGGTTTTTGATTTTTGCTCCTCGTACTCGTATTGGTCAGACTA
CCAGAGGTTTCGACTTCTGGCGGCGTGGTTTTTTCGTTGGTTCGGGATGG
GGGAGGGGCTACTCATGTGTTGCTTGCCTTGGTCGTTTCAACGTTTACGG
CGCAAATCCTTTCCAGACGGAGCACCATTGCTACTCCTAATAGAGACACC
TCCAACACTTGAGCGCTCTTATCGTTTTTGCTATATATTACATAAAAAAA
AAAACGTTTGCTTATCTTTTATCCCCTTTCTGTTTGCTTTTTGTGGTCAT
CATGTATCTCCT
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