mRNA_D-herbacea_F_contig104.465.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig104.465.1
Unique NamemRNA_D-herbacea_F_contig104.465.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig104contigD-herbacea_F_contig104:302276..303004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig104.465.1prot_D-herbacea_F_contig104.465.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig104 302601..302996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927448.0197082-UTR-D-herbacea_F_contig104:302275..3026001622927448.0197082-UTR-D-herbacea_F_contig104:302275..302600Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 302276..302600 +
1690790176.5387635-UTR-D-herbacea_F_contig104:302275..3026001690790176.5387635-UTR-D-herbacea_F_contig104:302275..302600Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 302276..302600 +
1622927448.0521185-UTR-D-herbacea_F_contig104:302996..3030041622927448.0521185-UTR-D-herbacea_F_contig104:302996..303004Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 302997..303004 +
1690790176.5573642-UTR-D-herbacea_F_contig104:302996..3030041690790176.5573642-UTR-D-herbacea_F_contig104:302996..303004Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig104 302997..303004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927448.0373938-CDS-D-herbacea_F_contig104:302600..3029961622927448.0373938-CDS-D-herbacea_F_contig104:302600..302996Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 302601..302996 +
1690790176.546751-CDS-D-herbacea_F_contig104:302600..3029961690790176.546751-CDS-D-herbacea_F_contig104:302600..302996Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 302601..302996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig104.465.1

>prot_D-herbacea_F_contig104.465.1 ID=prot_D-herbacea_F_contig104.465.1|Name=mRNA_D-herbacea_F_contig104.465.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=132bp
MCAHDDIAQHDRQELTAVDINHVRPCQQLRTTIIDTPEVPTERRPGRHGG
VRVYHILKNNPTNQHAVSIHQLRTHPTTASNQKQFSHLVAPTNAARPSVC
RTTTPRPTSHLPAFPRLVFALPSPAPFSSSG*
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mRNA from alignment at D-herbacea_F_contig104:302276..303004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig104.465.1 ID=mRNA_D-herbacea_F_contig104.465.1|Name=mRNA_D-herbacea_F_contig104.465.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=729bp|location=Sequence derived from alignment at D-herbacea_F_contig104:302276..303004+ (Desmarestia herbacea DmunF female)
CCCCCCTCCCGGATACCAACCATGTGCCACTCAACCAAAACCTTGCTTGC
AAGCCGTAAAGTCTGCAATACGACCAAGTTCCATGCCTAGCACCAGCGCA
AAATTCAGGCAATACGTTAACAATGGCACAGCGCAACGACAGCAAGCAAG
GCGCGGTCGAGTCTATCGGCGGTGGCTATACCTGCTACAGCATGTACGTG
CTGCTGTCTAACGCAGACTCTAACCCAGACCAAACAACGGGTGCCTTTGC
ACACAAACAAAGCTGACGGGCACAGCAGGCACCATTGCCGAAGCACTCGC
AGCGTACCTCTACGCAAGCTCATCCATGTGTGCACATGACGATATTGCAC
AACACGACCGACAAGAATTGACAGCTGTGGATATCAATCATGTCAGGCCT
TGCCAGCAGCTTCGTACCACTATCATAGACACGCCTGAAGTCCCAACAGA
GAGACGACCAGGCAGACACGGAGGTGTCCGTGTGTACCACATTCTAAAAA
ATAACCCAACCAATCAACACGCTGTATCTATCCACCAGCTTCGTACCCAC
CCCACCACGGCCTCAAACCAAAAACAATTCTCCCATCTTGTCGCGCCGAC
TAACGCGGCACGCCCCTCTGTTTGTCGTACGACTACTCCTCGTCCAACAT
CGCATCTTCCGGCCTTCCCCCGCCTCGTCTTTGCCTTGCCATCGCCCGCC
CCCTTCTCGTCATCCGGCTAACCCCATCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig104:302276..303004+

>mRNA_D-herbacea_F_contig104.465.1 ID=mRNA_D-herbacea_F_contig104.465.1|Name=mRNA_D-herbacea_F_contig104.465.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=792bp|location=Sequence derived from alignment at D-herbacea_F_contig104:302276..303004+ (Desmarestia herbacea DmunF female)
ATGTGTGCACATGACGATATTGCACAACACGACCGACAAGAATTGACAGC
TGTGGATATCAATCATGTCAGGCCTTGCCAGCAGCTTCGTACCACTATCA
TAGACACGCCTGAAGTCCCAACAGAGAGACGACCAGGCAGACACGGAGGT
GTCCGTGTGTACCACATTCTAAAAAATAACCCAACCAATCAACACGCTGT
ATCTATCCACCAGCTTCGTACCCACCCCACCACGGCCTCAAACCAAAAAC
AATTCTCCCATCTTGTCGCGCCGACTAACGCGGCACGCCCCTCTGTTTGT
CGTACGACTACTCCTCGTCCAACATCGCATCTTCCGGCCTTCCCCCGCCT
CGTCTTTGCCTTGCCATCGCCCGCCCCCTTCTCGTCATCCGGCTAAATGT
GTGCACATGACGATATTGCACAACACGACCGACAAGAATTGACAGCTGTG
GATATCAATCATGTCAGGCCTTGCCAGCAGCTTCGTACCACTATCATAGA
CACGCCTGAAGTCCCAACAGAGAGACGACCAGGCAGACACGGAGGTGTCC
GTGTGTACCACATTCTAAAAAATAACCCAACCAATCAACACGCTGTATCT
ATCCACCAGCTTCGTACCCACCCCACCACGGCCTCAAACCAAAAACAATT
CTCCCATCTTGTCGCGCCGACTAACGCGGCACGCCCCTCTGTTTGTCGTA
CGACTACTCCTCGTCCAACATCGCATCTTCCGGCCTTCCCCCGCCTCGTC
TTTGCCTTGCCATCGCCCGCCCCCTTCTCGTCATCCGGCTAA
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