mRNA_D-herbacea_F_contig104.461.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig104.461.1
Unique NamemRNA_D-herbacea_F_contig104.461.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig104contigD-herbacea_F_contig104:250061..250402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927447.978439-CDS-D-herbacea_F_contig104:250060..2504021622927447.978439-CDS-D-herbacea_F_contig104:250060..250402Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 250061..250402 +
1690790176.5303197-CDS-D-herbacea_F_contig104:250060..2504021690790176.5303197-CDS-D-herbacea_F_contig104:250060..250402Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 250061..250402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig104.461.1prot_D-herbacea_F_contig104.461.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig104 250061..250402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig104.461.1

>prot_D-herbacea_F_contig104.461.1 ID=prot_D-herbacea_F_contig104.461.1|Name=mRNA_D-herbacea_F_contig104.461.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=114bp
GSKTSVGGNKTSVGGSKTSVGGSKTSVGGSKTSVGGKGKGKASAKGRVKG
GGGDVESVQSDDNGASAKKPKKRASTTPLRQSSRAAAAAATVALTEVFDK
RSHPAKSTIPGLAE
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mRNA from alignment at D-herbacea_F_contig104:250061..250402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig104.461.1 ID=mRNA_D-herbacea_F_contig104.461.1|Name=mRNA_D-herbacea_F_contig104.461.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=342bp|location=Sequence derived from alignment at D-herbacea_F_contig104:250061..250402+ (Desmarestia herbacea DmunF female)
GGCAGCAAGACTTCCGTCGGCGGCAACAAGACTTCCGTCGGCGGCAGCAA
GACTTCCGTCGGCGGCAGCAAGACTTCCGTCGGTGGCAGCAAGACTTCCG
TCGGCGGCAAGGGAAAGGGAAAGGCTTCAGCTAAGGGCAGAGTTAAGGGA
GGCGGGGGTGACGTCGAGAGCGTGCAGAGCGATGACAACGGCGCGTCCGC
GAAGAAACCCAAGAAGAGGGCGTCCACGACCCCTCTCCGTCAGTCGAGTA
GGGCGGCAGCGGCGGCGGCAACTGTAGCTCTGACCGAGGTGTTCGACAAG
CGCTCGCACCCCGCGAAGTCGACCATTCCGGGATTGGCGGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig104:250061..250402+

>mRNA_D-herbacea_F_contig104.461.1 ID=mRNA_D-herbacea_F_contig104.461.1|Name=mRNA_D-herbacea_F_contig104.461.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=684bp|location=Sequence derived from alignment at D-herbacea_F_contig104:250061..250402+ (Desmarestia herbacea DmunF female)
GGCAGCAAGACTTCCGTCGGCGGCAACAAGACTTCCGTCGGCGGCAGCAA
GACTTCCGTCGGCGGCAGCAAGACTTCCGTCGGTGGCAGCAAGACTTCCG
TCGGCGGCAAGGGAAAGGGAAAGGCTTCAGCTAAGGGCAGAGTTAAGGGA
GGCGGGGGTGACGTCGAGAGCGTGCAGAGCGATGACAACGGCGCGTCCGC
GAAGAAACCCAAGAAGAGGGCGTCCACGACCCCTCTCCGTCAGTCGAGTA
GGGCGGCAGCGGCGGCGGCAACTGTAGCTCTGACCGAGGTGTTCGACAAG
CGCTCGCACCCCGCGAAGTCGACCATTCCGGGATTGGCGGAGGGCAGCAA
GACTTCCGTCGGCGGCAACAAGACTTCCGTCGGCGGCAGCAAGACTTCCG
TCGGCGGCAGCAAGACTTCCGTCGGTGGCAGCAAGACTTCCGTCGGCGGC
AAGGGAAAGGGAAAGGCTTCAGCTAAGGGCAGAGTTAAGGGAGGCGGGGG
TGACGTCGAGAGCGTGCAGAGCGATGACAACGGCGCGTCCGCGAAGAAAC
CCAAGAAGAGGGCGTCCACGACCCCTCTCCGTCAGTCGAGTAGGGCGGCA
GCGGCGGCGGCAACTGTAGCTCTGACCGAGGTGTTCGACAAGCGCTCGCA
CCCCGCGAAGTCGACCATTCCGGGATTGGCGGAG
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