mRNA_D-herbacea_F_contig104.459.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig104.459.1
Unique NamemRNA_D-herbacea_F_contig104.459.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig104.459.1 vs. uniprot
Match: A0A6H5JIC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.600e-21
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   16 SLKQTVDATRVALRSRLHYWARDVAVFIERGGSLESAVNVIPVNMSMARETPGPGEWNAWAGRSLDTWSGLMPLTIK 246
            S  + + +TR ALRSRLH+WAR++ +F+E+GG +E+ V  IPVNM++ R T GPGE +AWAG+SLD W GL PLT++
Sbjct:  586 SQAEILSSTREALRSRLHFWAREIPIFVEQGGDIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVE 662
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BLAST of mRNA_D-herbacea_F_contig104.459.1 vs. uniprot
Match: D7G174_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G174_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.030e-21
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   16 SLKQTVDATRVALRSRLHYWARDVAVFIERGGSLESAVNVIPVNMSMARETPGPGEWNAWAGRSLDTWSGLMPLTIK 246
            S  + + +TR A+RSRLH+WAR++ +F+E+GG +E+ V  IPVNM++ R T GPGE +AWAG+SLD W GL PLT++
Sbjct:  553 SQAEILGSTREAMRSRLHFWAREIPIFVEQGGEIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVE 629
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIC2_9PHAE1.600e-2155.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G174_ECTSI4.030e-2154.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig104contigD-herbacea_F_contig104:243632..246011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size582
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig104.459.1prot_D-herbacea_F_contig104.459.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig104 243632..246010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927447.7213345-CDS-D-herbacea_F_contig104:243631..2437241622927447.7213345-CDS-D-herbacea_F_contig104:243631..243724Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 243632..243724 +
1690790176.4286542-CDS-D-herbacea_F_contig104:243631..2437241690790176.4286542-CDS-D-herbacea_F_contig104:243631..243724Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 243632..243724 +
1622927447.732399-CDS-D-herbacea_F_contig104:244737..2448661622927447.732399-CDS-D-herbacea_F_contig104:244737..244866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 244738..244866 +
1690790176.4380221-CDS-D-herbacea_F_contig104:244737..2448661690790176.4380221-CDS-D-herbacea_F_contig104:244737..244866Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 244738..244866 +
1622927447.744804-CDS-D-herbacea_F_contig104:245653..2460101622927447.744804-CDS-D-herbacea_F_contig104:245653..246010Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 245654..246010 +
1690790176.4469502-CDS-D-herbacea_F_contig104:245653..2460101690790176.4469502-CDS-D-herbacea_F_contig104:245653..246010Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 245654..246010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig104.459.1

>prot_D-herbacea_F_contig104.459.1 ID=prot_D-herbacea_F_contig104.459.1|Name=mRNA_D-herbacea_F_contig104.459.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=193bp
FLHTRSLKQTVDATRVALRSRLHYWARDVAVFIERGGSLESAVNVIPVNM
SMARETPGPGEWNAWAGRSLDTWSGLMPLTIKDRPVTPGEEGIAASEVAA
KDGGGSSGTGKNERELCDMNIDLDSEADKILDKGSSQQTQQEQEQRLKAS
ASKSNSPAGRKVPKAVPSAKKAARADGTAAASGEEATGGGGER
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mRNA from alignment at D-herbacea_F_contig104:243632..246011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig104.459.1 ID=mRNA_D-herbacea_F_contig104.459.1|Name=mRNA_D-herbacea_F_contig104.459.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2380bp|location=Sequence derived from alignment at D-herbacea_F_contig104:243632..246011+ (Desmarestia herbacea DmunF female)
TTCTTGCACACTCGATCGCTGAAGCAGACAGTAGACGCCACGAGAGTCGC
GCTGCGATCCCGCCTCCACTACTGGGCTCGGGATGTCGCCGTGGTGAGAC
TGAGATGCCCTCAGTTGTTGTTAGTTCCCTCTTGCGGTAGGTTTTAGCTT
TTTTTTTAAGGACGGATATGTGGATAGGTTTTGACTTTCTATATTTGTTT
CTATGTGTTCGTTAAGATTCGACTTAATAGGTTTAGTAGTGGAATTTTCC
GAACTGCTGAACAGCCAACCACATTGTTACTAATCATACATCTAATAAAA
AGAACATGCTAAAGATCCGGCCTAAAAAAGAAAAGCTTAGAGCGGGCTCC
CCTCTTGTGCGCCGTGCTTCTTCGTCTCTGGGCGTGCGCATATTGCGTAG
CGCGTAGCGCGAGACTACAAGAAGCGCAGTAGATGTTGCGACGTGGTCGG
GGGCTGGTTTTTTGCTCGCTGTTATCCTCTGGTGTAGCCGTTATGCGAGG
GTTGGGGGTAGCGCTAGAAAATGCTTCGAGCCGTTGAGCAGCCCACCTTC
GTACCATTAGTATACATTATTAAAACGAAGATCCTTAAAGACCCCCTCCT
AACAACCTCAACCATTGTACATGTTGTAAAGTAGCCTCGTGAAGGGAGTC
GTCCAACCGTAATACTCTTATTATAGGGAGGTTGCTGGGTCGTCTTGAAG
AGCGGTTGTCGGCGACTGCGGCGTGCGTCAGTACGTGTTAGCACTCTTTA
GATTATGAGCAATTTCTTAAGAGGGTTGTTAAGTATCGGGGTTCATTTTC
GGTTAAGCGTTAAGGTTAGTTGTAGAATTTTCTATTATAGCATTTTCTGT
AACCCACGTCTCTAGTCTATACTGTTATGTATAATACGTTCAAAATATAC
GATATTCCTCTAAACAATTTTTTTTTTTTCTACCTCGCGTGTATAGTCGC
CGTTGGTATTAACCCTTCCCCTGCCCCCCTCGGAGAAATTCCGACGTGCT
CCGTCCCGGCATTGTAGGGATGCGAGGGTCTATGGTCATACAACTACGGC
CATGCATGAAATGAGTACACCGCCACCCCCCCCACCCCCTCCCTCCCCTG
TGCCAGTTTATTGAACGTGGAGGAAGCTTGGAGTCGGCGGTGAACGTAAT
CCCAGTCAACATGAGCATGGCCAGGGAAACGCCAGGGCCGGGAGAGTGGA
ACGCCTGGGCGGGGAGGTCACTGGATACCTGGTCGGTGAGTCAAACCTGT
TCAATTCATTGTTTTTGTGTTTTTGGTTGTGTTTTTGGTTTTGGAGAAGC
TGCTGTAGATGCCGTTGGCACAAGAGAGGGGAGGGCGGGAGGGGTGCACT
CAATTCATGCATGGCCGTAGTCGTATGACCATAGACCCTCGCATCACTAC
AATGCCGGGACGGCGCACTTCGGGTTTTCACCTACCAGGCGAACACGGGG
GGGGGGGGGGGATTCGTGTGGGGGTACCTGAGTGGAACGAGCATTTATGC
TTCTATTTTTTCCGATTGTTGTCACTGTTCGGGTTTAGTTGGGGAGGGAG
GGAGGGAGACACGTGTTTTGGATGTCGAAGTTTTCAATAGCATGGGTGGA
TTAGATCTTTCTTGAACATTTGGCATAGCATAGTGTGAGTCGGGCGTGCT
GGGGCGTGAGGAGTATGTAGACCTTTCCTTCCTTCCTACTGCTGTTGTAG
CATCGAGCGCGGATGGGCGGGGGGGGGGGGGGGGGGTTGTTTATGGTCTA
GCTGTTACTAAACTGAGATGCCTGGAGAGGACAGTGTTGTGCGTCATCAT
GAATACCTGGTACGCCCTACCCGCCCCCCGGCCCCCCGAACAACAATTAT
GTAAGATGTGGAAAAAACGTAAAGAGCGTCCAAATGTTGGAGGTATCTCT
ATTAGGAGTAGGAACGGTGCTCCGTCTCGAAAGGGATGCGTGGTCAATGG
TCAAATGACTAAGGCAAGCAACAAATGAGTACGCCCCCCCCCGACCCCCC
TCGCATACGCCTCCTCTGCTAGGGGCTTATGCCGCTCACCATCAAAGATC
GCCCAGTCACTCCTGGGGAGGAAGGTATTGCGGCCTCCGAAGTGGCGGCT
AAGGATGGCGGTGGCTCTAGCGGAACCGGGAAAAATGAACGCGAGCTGTG
TGACATGAACATTGACCTCGACAGTGAAGCCGACAAGATCTTGGACAAAG
GAAGTTCTCAGCAGACGCAGCAGGAGCAGGAGCAGCGCTTGAAAGCCTCG
GCGAGTAAATCCAACAGTCCCGCCGGCAGAAAAGTGCCAAAAGCAGTACC
CAGCGCCAAGAAAGCCGCCCGCGCCGATGGCACAGCTGCTGCGTCGGGCG
AGGAAGCGACTGGAGGGGGGGGCGAACGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig104:243632..246011+

>mRNA_D-herbacea_F_contig104.459.1 ID=mRNA_D-herbacea_F_contig104.459.1|Name=mRNA_D-herbacea_F_contig104.459.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1158bp|location=Sequence derived from alignment at D-herbacea_F_contig104:243632..246011+ (Desmarestia herbacea DmunF female)
TTCTTGCACACTCGATCGCTGAAGCAGACAGTAGACGCCACGAGAGTCGC
GCTGCGATCCCGCCTCCACTACTGGGCTCGGGATGTCGCCGTGTTCTTGC
ACACTCGATCGCTGAAGCAGACAGTAGACGCCACGAGAGTCGCGCTGCGA
TCCCGCCTCCACTACTGGGCTCGGGATGTCGCCGTGTTTATTGAACGTGG
AGGAAGCTTGGAGTCGGCGGTGAACGTAATCCCAGTCAACATGAGCATGG
CCAGGGAAACGCCAGGGCCGGGAGAGTGGAACGCCTGGGCGGGGAGGTCA
CTGGATACCTGGTCGTTTATTGAACGTGGAGGAAGCTTGGAGTCGGCGGT
GAACGTAATCCCAGTCAACATGAGCATGGCCAGGGAAACGCCAGGGCCGG
GAGAGTGGAACGCCTGGGCGGGGAGGTCACTGGATACCTGGTCGGGGCTT
ATGCCGCTCACCATCAAAGATCGCCCAGTCACTCCTGGGGAGGAAGGTAT
TGCGGCCTCCGAAGTGGCGGCTAAGGATGGCGGTGGCTCTAGCGGAACCG
GGAAAAATGAACGCGAGCTGTGTGACATGAACATTGACCTCGACAGTGAA
GCCGACAAGATCTTGGACAAAGGAAGTTCTCAGCAGACGCAGCAGGAGCA
GGAGCAGCGCTTGAAAGCCTCGGCGAGTAAATCCAACAGTCCCGCCGGCA
GAAAAGTGCCAAAAGCAGTACCCAGCGCCAAGAAAGCCGCCCGCGCCGAT
GGCACAGCTGCTGCGTCGGGCGAGGAAGCGACTGGAGGGGGGGGCGAACG
GGGGCTTATGCCGCTCACCATCAAAGATCGCCCAGTCACTCCTGGGGAGG
AAGGTATTGCGGCCTCCGAAGTGGCGGCTAAGGATGGCGGTGGCTCTAGC
GGAACCGGGAAAAATGAACGCGAGCTGTGTGACATGAACATTGACCTCGA
CAGTGAAGCCGACAAGATCTTGGACAAAGGAAGTTCTCAGCAGACGCAGC
AGGAGCAGGAGCAGCGCTTGAAAGCCTCGGCGAGTAAATCCAACAGTCCC
GCCGGCAGAAAAGTGCCAAAAGCAGTACCCAGCGCCAAGAAAGCCGCCCG
CGCCGATGGCACAGCTGCTGCGTCGGGCGAGGAAGCGACTGGAGGGGGGG
GCGAACGG
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