mRNA_D-herbacea_F_contig104.458.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig104.458.1
Unique NamemRNA_D-herbacea_F_contig104.458.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig104.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig104contigD-herbacea_F_contig104:240255..242104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927447.6639311-CDS-D-herbacea_F_contig104:240254..2404731622927447.6639311-CDS-D-herbacea_F_contig104:240254..240473Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 240255..240473 +
1690790176.412944-CDS-D-herbacea_F_contig104:240254..2404731690790176.412944-CDS-D-herbacea_F_contig104:240254..240473Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 240255..240473 +
1622927447.6810944-CDS-D-herbacea_F_contig104:241902..2421031622927447.6810944-CDS-D-herbacea_F_contig104:241902..242103Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 241903..242103 +
1690790176.42115-CDS-D-herbacea_F_contig104:241902..2421031690790176.42115-CDS-D-herbacea_F_contig104:241902..242103Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig104 241903..242103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig104.458.1prot_D-herbacea_F_contig104.458.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig104 240255..242103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig104.458.1

>prot_D-herbacea_F_contig104.458.1 ID=prot_D-herbacea_F_contig104.458.1|Name=mRNA_D-herbacea_F_contig104.458.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=140bp
GGEEVGDNDHEDRVEKEEAEKRELAWQKHQEQLRKEKEHRELQKRWDEEE
AERRKENERKAQLALWSRERPALERIAAGGEEELRAPPPSQDLYRHALQN
MLRLDEPPRGPRFSGEAGTAVVVTDCGRTYPSSPSPPPMD
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mRNA from alignment at D-herbacea_F_contig104:240255..242104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig104.458.1 ID=mRNA_D-herbacea_F_contig104.458.1|Name=mRNA_D-herbacea_F_contig104.458.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1850bp|location=Sequence derived from alignment at D-herbacea_F_contig104:240255..242104+ (Desmarestia herbacea DmunF female)
GGCGGGGAAGAGGTAGGTGATAATGACCACGAGGATAGGGTGGAGAAGGA
GGAGGCGGAGAAGCGAGAGCTTGCTTGGCAGAAGCACCAGGAACAGCTGA
GGAAGGAGAAAGAGCACCGAGAGTTGCAGAAGCGGTGGGACGAGGAAGAG
GCAGAGCGGCGCAAGGAAAATGAGCGGAAAGCGCAGCTGGCGTTGTGGTC
CAGGGAACGTCCAGCCCTTGTGAGCGCTTTTGTTTGTTGCGGCTGCACTG
AAATGATTATCCGTAAAATATGGTAAAATATTATTAACATCTACGTCGTA
TTAATACACGGAATGTCTTATCTCCCTGGGATGGAAGAATCAGTACAGAC
TCGTAGTATGTTACTGGATGTCGTAGGGTAGAGAGGGCGATTGTTGATGT
GAAGACAACAACAACTTGTCAATAATAATTTATTTTCAATTAGTTTTTCA
CTTCCGAAGGAGACGCTTATAGCAGAATCGGCACGTTTACGGCATATAGC
CCGAGGTCGGTAAGTCTGTACCGTTTCGATGCGAGCCATGCGTTGTCGAT
TGAGTTTTGCGTCCGCCGCTGGTCCCAGTAAGGCATGGGCGAGATGCGTT
TTACCTGTCAGCGCCCGCGGTACTACTGTACTCCCCTCCTCTACTTTAAT
AAAAACCTGAGAGAACGCACGAGGGAGCACCATTTACACACCTATAGACC
GGATCTTCCGTATGTTCGTTTTATTGTACTAGTAGTACCAACGTGGGATA
TTCAGAAGTTCGGAATAATTTCTATAACTAGCTATAACCCTATCCTAACG
GCCAGCGCTATTCTACACGCAGGGAGCATTAACCTCAGCAAAGATGCGGT
CGATGGGTGTGTTATATACTGCTGGCATGAGGTCTGAAACGATCGTCCTG
GCTGCATCGTATTTACCCCCAGCCTGACCTCTCCCACACTCGTTAGGTGC
TATACAGCGTCCTTACCAAGCGAAGCGGTAGTTGCGGTCGATACAGTAGT
AGTAGCAGTGTCGAATATTGTTCTTGAGCAGCGACGTTGATTGATCAGGG
TATATCGCTCCTGTGTGGTGAGAATATCGCTCCGCCCCTTGGTGGAAAAA
GTGCTAGTTCTGTTATATTACATGTTATATAGCTCTAGTGTAACACTATA
GTTTTAAGTGGTTTGATTGTCGCCCTTGTTGACGGAAGTGCGGTGTTCGA
TTCACGGTGAAAACAAAATTGCACTTTTTTGTACCATCTCCGTCACGGAT
AGCGCGAGTAAGCACAATTCGATGAAAAGCTGCGAGCCATGGGATGTCCA
ACCCTGTGCGCGATAAAAACAATGGTTGGCATGCACCGGGGGAGGAGAAG
GGAAGACCCCTGCGACCGCGGCTTTACTCAGACAGGCGCGCCGGGCGACG
AGTAGAAGAGCTCTCCTGTGATGGAGGAGACTGGGAAAGTAAAAGTGATG
GATGAAAAAGATGTTGGAAAAAAAAAGAGAGAGAGAGAGAGAACCTTAAA
AAAAAAGCTGAACTGTGGAAATTATGTCGAGCTACAGCTTTTAATATTAC
GCATCCGGCGGAGAAAAAAAAAACATTGAATGACACATGAAACGTGACTA
CCCCCCCCCCCCCTCCCCCGCCCGGTTCACCACACTGCACAATAACAGGA
GCGCATCGCGGCGGGCGGAGAGGAAGAGTTGCGGGCTCCTCCCCCGTCCC
AAGACCTCTACCGTCATGCCTTGCAAAACATGCTCAGACTAGACGAGCCG
CCTCGGGGGCCGCGATTTTCTGGCGAGGCGGGAACAGCTGTCGTGGTGAC
GGATTGCGGTCGTACTTACCCGTCTTCACCTTCGCCGCCGCCGATGGACG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig104:240255..242104+

>mRNA_D-herbacea_F_contig104.458.1 ID=mRNA_D-herbacea_F_contig104.458.1|Name=mRNA_D-herbacea_F_contig104.458.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=840bp|location=Sequence derived from alignment at D-herbacea_F_contig104:240255..242104+ (Desmarestia herbacea DmunF female)
GGCGGGGAAGAGGTAGGTGATAATGACCACGAGGATAGGGTGGAGAAGGA
GGAGGCGGAGAAGCGAGAGCTTGCTTGGCAGAAGCACCAGGAACAGCTGA
GGAAGGAGAAAGAGCACCGAGAGTTGCAGAAGCGGTGGGACGAGGAAGAG
GCAGAGCGGCGCAAGGAAAATGAGCGGAAAGCGCAGCTGGCGTTGTGGTC
CAGGGAACGTCCAGCCCTTGGCGGGGAAGAGGTAGGTGATAATGACCACG
AGGATAGGGTGGAGAAGGAGGAGGCGGAGAAGCGAGAGCTTGCTTGGCAG
AAGCACCAGGAACAGCTGAGGAAGGAGAAAGAGCACCGAGAGTTGCAGAA
GCGGTGGGACGAGGAAGAGGCAGAGCGGCGCAAGGAAAATGAGCGGAAAG
CGCAGCTGGCGTTGTGGTCCAGGGAACGTCCAGCCCTTGAGCGCATCGCG
GCGGGCGGAGAGGAAGAGTTGCGGGCTCCTCCCCCGTCCCAAGACCTCTA
CCGTCATGCCTTGCAAAACATGCTCAGACTAGACGAGCCGCCTCGGGGGC
CGCGATTTTCTGGCGAGGCGGGAACAGCTGTCGTGGTGACGGATTGCGGT
CGTACTTACCCGTCTTCACCTTCGCCGCCGCCGATGGACGAGCGCATCGC
GGCGGGCGGAGAGGAAGAGTTGCGGGCTCCTCCCCCGTCCCAAGACCTCT
ACCGTCATGCCTTGCAAAACATGCTCAGACTAGACGAGCCGCCTCGGGGG
CCGCGATTTTCTGGCGAGGCGGGAACAGCTGTCGTGGTGACGGATTGCGG
TCGTACTTACCCGTCTTCACCTTCGCCGCCGCCGATGGAC
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