mRNA_D-herbacea_F_contig1033.449.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1033.449.1
Unique NamemRNA_D-herbacea_F_contig1033.449.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 6.510e-7
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   19 WLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            WLADSGAS HMT + + L D    P    V+IGN   I +  YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  151 WLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPV--YGWGTVNFKVFIKGKWILNRMEVVWYVPKLGLNLFSIEKAAEKG 234
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 9.090e-7
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  279 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTI--PAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 364
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA)

HSP 1 Score: 55.1 bits (131), Expect = 9.540e-7
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  291 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTI--PAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 376
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A4Y2R182_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R182_ARAVE)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-6
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGG-LTVKLDKVTYVPDLAFNLFSLVAAHKKG 267
            ++W+ADSGAS HMT      +D +  PS+  V +GN++ I +  YG  TVNF     G  +   L +V YVPD++ NLFS+     KG
Sbjct:   65 EQWIADSGASAHMTSYRKYFLDFKDFPSSKPVYVGNNNAIMV--YGQGTVNFDMNVNGKWVNNHLSEVWYVPDVSRNLFSVSQTLAKG 150
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.220e-6
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  280 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 365
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A1Y3E8D5_9BILA (Integrase core domain protein (Fragment) n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3E8D5_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-6
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   19 WLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:    2 WLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTI--PAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 85
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A1Y3EJI6_9BILA (Integrase core domain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EJI6_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.270e-6
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:   32 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 117
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V1NHV8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1NHV8_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.290e-6
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  214 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 299
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct:  280 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 365
[Close]
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-6
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   13 KRWLADSGASYHMTPSADSLIDVQ--PSTDKVRIGNDSLIDIESYGTLTVNFPSQEEGGLTV-KLDKVTYVPDLAFNLFSLVAAHKKG 267
            + WLADSGAS HMT + + L D    P    V++GN   I   +YG  TVNF    +G   + +++ V YVP L  NLFS+  A +KG
Sbjct: 1073 RMWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAI--PAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKG 1158
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1033.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1HEX2_9BILA6.510e-744.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0Z7R7_9BILA9.090e-742.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1L945_9BILA9.540e-742.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2R182_ARAVE1.150e-640.91Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
A0A0V0WE00_9BILA1.220e-642.05Copia protein n=4 Tax=Trichinella sp. T6 TaxID=921... [more]
A0A1Y3E8D5_9BILA1.260e-643.02Integrase core domain protein (Fragment) n=1 Tax=T... [more]
A0A1Y3EJI6_9BILA1.270e-642.05Integrase core domain protein n=1 Tax=Trichinella ... [more]
A0A0V1NHV8_9BILA1.290e-642.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1B5K0_TRISP1.300e-642.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0TK25_9BILA1.300e-642.05Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1033contigD-herbacea_F_contig1033:84940..85212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927447.4406734-CDS-D-herbacea_F_contig1033:84939..852121622927447.4406734-CDS-D-herbacea_F_contig1033:84939..85212Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 84940..85212 +
1690790176.3269308-CDS-D-herbacea_F_contig1033:84939..852121690790176.3269308-CDS-D-herbacea_F_contig1033:84939..85212Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 84940..85212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1033.449.1prot_D-herbacea_F_contig1033.449.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1033 84940..85212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1033.449.1

>prot_D-herbacea_F_contig1033.449.1 ID=prot_D-herbacea_F_contig1033.449.1|Name=mRNA_D-herbacea_F_contig1033.449.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=91bp
DSSAKRWLADSGASYHMTPSADSLIDVQPSTDKVRIGNDSLIDIESYGTL
TVNFPSQEEGGLTVKLDKVTYVPDLAFNLFSLVAAHKKGVG
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mRNA from alignment at D-herbacea_F_contig1033:84940..85212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1033.449.1 ID=mRNA_D-herbacea_F_contig1033.449.1|Name=mRNA_D-herbacea_F_contig1033.449.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=273bp|location=Sequence derived from alignment at D-herbacea_F_contig1033:84940..85212+ (Desmarestia herbacea DmunF female)
GATAGTAGTGCAAAGAGATGGCTGGCAGACAGTGGGGCATCCTATCACAT
GACACCTTCAGCTGACTCCCTCATTGACGTGCAACCTTCGACTGATAAGG
TTAGAATCGGGAACGACAGTCTGATAGACATCGAGAGTTATGGCACTTTG
ACTGTTAATTTCCCCAGCCAGGAAGAAGGAGGTTTGACGGTGAAGCTAGA
TAAAGTGACGTATGTACCGGACTTGGCTTTCAACCTGTTTTCGTTGGTAG
CTGCGCACAAGAAAGGGGTAGGT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1033:84940..85212+

>mRNA_D-herbacea_F_contig1033.449.1 ID=mRNA_D-herbacea_F_contig1033.449.1|Name=mRNA_D-herbacea_F_contig1033.449.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=546bp|location=Sequence derived from alignment at D-herbacea_F_contig1033:84940..85212+ (Desmarestia herbacea DmunF female)
GATAGTAGTGCAAAGAGATGGCTGGCAGACAGTGGGGCATCCTATCACAT
GACACCTTCAGCTGACTCCCTCATTGACGTGCAACCTTCGACTGATAAGG
TTAGAATCGGGAACGACAGTCTGATAGACATCGAGAGTTATGGCACTTTG
ACTGTTAATTTCCCCAGCCAGGAAGAAGGAGGTTTGACGGTGAAGCTAGA
TAAAGTGACGTATGTACCGGACTTGGCTTTCAACCTGTTTTCGTTGGTAG
CTGCGCACAAGAAAGGGGTAGGTGATAGTAGTGCAAAGAGATGGCTGGCA
GACAGTGGGGCATCCTATCACATGACACCTTCAGCTGACTCCCTCATTGA
CGTGCAACCTTCGACTGATAAGGTTAGAATCGGGAACGACAGTCTGATAG
ACATCGAGAGTTATGGCACTTTGACTGTTAATTTCCCCAGCCAGGAAGAA
GGAGGTTTGACGGTGAAGCTAGATAAAGTGACGTATGTACCGGACTTGGC
TTTCAACCTGTTTTCGTTGGTAGCTGCGCACAAGAAAGGGGTAGGT
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