mRNA_D-herbacea_F_contig1033.447.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1033.447.1
Unique NamemRNA_D-herbacea_F_contig1033.447.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1033.447.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.190e-11
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 2 
Query:  617 SECLAPLTVALEWFDD-ADLDLRVAEPGAGDRVFYGNRGGKFGYLDQDNTSGPEDGPEQYIVYGGFPASSTASSSSEEYPLGQYWLVVHNYSNDYAR--FKLTATTGSGEVILDEEGTI----------------DPECGG 982
            S C+  LT+ LEW  + +D+DL V EPG G+ V++ NRGG  G+LD D+T G   GPE YI+        +A   +    LG+Y   V  YS D A   ++LTA   SGEV+  EEG                  DP CGG
Sbjct:  309 SACVPSLTITLEWTGEISDVDLYVVEPG-GEVVYFSNRGGDVGFLDNDDTYGF--GPENYII-------DSALDPAASQVLGEYETYVKLYSGDAATETWRLTARV-SGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGG 438
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BLAST of mRNA_D-herbacea_F_contig1033.447.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.240e-11
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 2 
Query:  617 SECLAPLTVALEWFDD-ADLDLRVAEPGAGDRVFYGNRGGKFGYLDQDNTSGPEDGPEQYIVYGGFPASSTASSSSEEYPLGQYWLVVHNYSNDYAR--FKLTATTGSGEVILDEEGTI----------------DPECGG 982
            S C+  LT+ LEW  + +D+DL V EPG G+ V++ NRGG  G+LD D+T G   GPE YI+        +A   +    LG+Y   V  YS D A   ++LTA   SGEV+  EEG                  DP CGG
Sbjct:  435 SACVPSLTITLEWTGETSDVDLYVVEPG-GEVVYFSNRGGDVGFLDNDDTYGF--GPENYII-------DSALDPAASQVLGEYETYVKLYSGDAATETWRLTARV-SGEVVWIEEGDFISSTQSDTFAVSLSVYDPTCGG 564
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1033.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5D6_ECTSI4.190e-1139.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI6.240e-1139.01VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1033contigD-herbacea_F_contig1033:26186..30651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue9.7e-11
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size1923
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1033.447.1prot_D-herbacea_F_contig1033.447.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1033 26226..29836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927446.9865613-UTR-D-herbacea_F_contig1033:26185..262251622927446.9865613-UTR-D-herbacea_F_contig1033:26185..26225Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1033 26186..26225 +
1690790176.1429105-UTR-D-herbacea_F_contig1033:26185..262251690790176.1429105-UTR-D-herbacea_F_contig1033:26185..26225Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1033 26186..26225 +
1622927447.0229404-UTR-D-herbacea_F_contig1033:29836..306511622927447.0229404-UTR-D-herbacea_F_contig1033:29836..30651Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1033 29837..30651 +
1690790176.188344-UTR-D-herbacea_F_contig1033:29836..306511690790176.188344-UTR-D-herbacea_F_contig1033:29836..30651Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1033 29837..30651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927446.9986079-CDS-D-herbacea_F_contig1033:26225..269181622927446.9986079-CDS-D-herbacea_F_contig1033:26225..26918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 26226..26918 +
1690790176.1543515-CDS-D-herbacea_F_contig1033:26225..269181690790176.1543515-CDS-D-herbacea_F_contig1033:26225..26918Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 26226..26918 +
1622927447.0117135-CDS-D-herbacea_F_contig1033:29461..298361622927447.0117135-CDS-D-herbacea_F_contig1033:29461..29836Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 29462..29836 +
1690790176.1766186-CDS-D-herbacea_F_contig1033:29461..298361690790176.1766186-CDS-D-herbacea_F_contig1033:29461..29836Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1033 29462..29836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1033.447.1

>prot_D-herbacea_F_contig1033.447.1 ID=prot_D-herbacea_F_contig1033.447.1|Name=mRNA_D-herbacea_F_contig1033.447.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=356bp
MKTQSVAIASVLGVLFAGFTVTEAGKETIEVTEGAVTFTVDTYDDGRNKP
YRVTWNDPDDGFLCQFKFNMDGVVTNIETDGDTYKVLYGSNGNLRRVRRT
SSRRTLTEGGQGVVAEVVDANDSIHTGGHRRLYDCGDCEDTVNTLVSNGA
PSVCNLVGYGDPILDSAARSIDVFCDNFQLLIAEEACEGQCESECLAPLT
VALEWFDDADLDLRVAEPGAGDRVFYGNRGGKFGYLDQDNTSGPEDGPEQ
YIVYGGFPASSTASSSSEEYPLGQYWLVVHNYSNDYARFKLTATTGSGEV
ILDEEGTIDPECGGENLARFFRVDLSGYVDNDCDLPDMAQIEGEVAAEGD
QPTKD*
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mRNA from alignment at D-herbacea_F_contig1033:26186..30651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1033.447.1 ID=mRNA_D-herbacea_F_contig1033.447.1|Name=mRNA_D-herbacea_F_contig1033.447.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4466bp|location=Sequence derived from alignment at D-herbacea_F_contig1033:26186..30651+ (Desmarestia herbacea DmunF female)
GCAGGAACGCATCTCGTCTACTCAGTTGCGCAACCAAGCCATGAAGACTC
AATCAGTAGCGATCGCCTCCGTTCTCGGCGTTCTGTTCGCCGGCTTTACC
GTTACCGAGGCCGGCAAGGAAACCATCGAAGTAACCGAGGGCGCCGTGAC
GTTTACGGTGGACACGTATGACGACGGGCGAAACAAACCGTACAGGGTAA
CCTGGAACGACCCCGATGATGGCTTCTTATGCCAATTCAAGTTCAACATG
GACGGCGTCGTGACCAACATTGAGACCGACGGCGACACGTACAAGGTCTT
GTACGGGAGCAACGGTAATCTGAGGAGAGTGAGGCGTACGAGCTCGAGGC
GCACTCTTACCGAAGGAGGACAGGGTGTTGTTGCCGAGGTGGTTGACGCC
AACGATTCCATCCACACTGGTGGCCACCGTCGACTGTACGACTGCGGAGA
TTGTGAAGATACGGTGAACACGCTCGTGAGCAACGGTGCGCCTTCCGTGT
GCAACTTGGTTGGCTACGGCGACCCGATTCTCGATTCAGCGGCGAGGTCA
ATAGACGTCTTCTGCGATAACTTTCAGTTGCTGATAGCTGAGGAGGCTTG
CGAAGGTCAATGCGAAAGCGAATGCCTTGCGCCGCTCACGGTCGCGCTGG
AGTGGTTTGACGACGCCGATCTCGACCTGAGGGTGGCGGAGCCTGGCGCA
GGCGACAGAGTTTTCTACGGCAACCGTGGCGGGGTGAGTGCCATAAAACA
TAAAACGTCACTTCCATGCTTCTGTGCCCACAACGGCCATTAAACATAAG
TGTGACCTCTTTTAAAAACACCCGCCTTGCGGAATTCATGCCACCGAAAA
ATATGCCGTGACCAGGTCGCGGGTTGAAGCGCACAATTCTCTCACGCAAG
TGACCAAATGTGGCAATAATGTTTGTCCCACCCAAAGGCCCACCGAACTC
TATCGTATCTCGGTTGACCGGTGGTGAAAACACTTGAATAGTTGGGATAC
TAGACTAGTAAAACAGCGCTAGCGTCCAACGTGCTTTAATAGTTTTTGTT
TGCATCGTCGGTGGACTGGGAGTTGGCGCATTTTTCTGACACCACGGGTT
AATTTTGTTTTGTTGCGTCGCTCGGGTGTATTGTCGCATGCTACTACAGT
ACTGAACAATAACAATATCAGGAATGGACATCACTACAGATACATTGTCG
GTGCATAGTATTGACTATAGGGCTGAAGCGCCCCACTCCGGTGGTTGACT
TGGTCATAGTGGTTGATACGATGATACCAGCCAGTTGACGGAAGTTCGGT
GTTTCGAATCTCGGTACATTGCGTGTTGTATATTGTTATATTTTCTGTCG
TGGAAAGTGGGAGCGAGCGGCGTAAAGAATGCAAGATCCATCGAAAATCC
ATCTTCACGATATGCGGTGCTGCCACGTGAATCCAGAGATCACCGAGGCG
GCCGTGCATAGCAGCGGTTCAAACTGCTGTAGAGAGCATTTTGTAGCGCG
GCTGACATGTTTAAATTAGGTGTCGATGATTTGAGGTCTGGACCGGCGAC
GGTTCTCAGAAGAAGTTGCCTTTGAATACCCGCTGATACATTTCGTGGGC
CGTCATGGTCCATGTATGGTGATAAGCAGCGAACCTGTAGTTATTTGCAT
TTGCTTTGTGCCGAATCATTCTACAGCCCGATAGATACAAAATAATGCTA
TGATAATTCTGTGTCTGATATCGATGGGGGGTGGAACAAAATCGTGGAGC
AGTTGTCCTGCCCAAGCGGGCTCTCCTCGCCGACCGTATTCGTATGCAAT
CGTGAAGGGGGGGGGGGCTCGCGCGTCCATTCTTTGGCCCTCGAGGTATA
CGAGTACATTCTATTGCGTTTACCAGATTGACCCCGGCGTTTAGCGGTGT
TATTGTCGTGCGGGTCACCACCCAGCATATTGTGTTTGTGGTGCAGATTT
ACGGAGTTGTCAACCCTCATGTAGCAGTGCTCCGAGTACGACTACATTAC
CAGCAATGATTTCGTGTTCAAATGGATCTACAGTAGTTGGCGTCTTCGTC
CAGAAAAGCTCGATCCCAGCGACTACCGACGTACCTGATGTGGGTGATTC
AGCTCTCACTGTGATCACAACTAACTCTCATTCGATTAGTCTGTTTTTGT
GATTGGTGAGACAAAGGCGGTCGGCTCCCCTACGAGTATCACAGGGTTAC
ATGTACATGGTGAGGCCTTGCTTGGTAGATGCCAAACCGGTTGGAGGAGG
GGCCAACCTAATCTGCATCTATCTACTTCGAAGTATGTATTTAGCTGGTG
ATCTATCTAACGTTGATTTTGCTTGGACAAGTCGGGCCCATATGTGTTGT
GAGACGACTTTATGTTGCAGGTAGGCTGATTTCTACAGCGAACGGCCGAC
ACCACATAGTAACTAAAATGCAGAACGAATATCAGACTTTGCATGGGTGG
ATGCGTTGTACGTATGATCTCTTCTCCGTTCATTATAACATGTGTACCAA
CATGCCTCAAGAAGGTGGCGTCCTCACAGTCATTCCCACAGTAGCAACTA
CGCTTTCGAATGCCAACTCACGCACGCACGAGTAACGCAACACCCCCAAA
AGGGGCGGTGCTAAGGAATATCTCTTTTCTGTAGTTAAAATCACTTTTTT
GTTTCGAGGCGAAGGAAAGGGGATATAGTTCATGCAAATATTCAGGCGTG
GGACCGTATGTTGACTTCGCTGCTCGATAGGGTGCGGTATCTGTAAAGCT
GAAATCATCCATGGGTAATAAGCTAGCCAATCGTCACAATTGCTCTTGTT
CGCACACCTGCAGAAGGTCGCAGGACGAGGCAAAGGTCGTGGTTATTCAT
CGTCCCTCTTTCCGATATTCCTGCAGTCCACTCCGTGAAGAATGCTAGTA
TTATTCCTGTCATCTCGTAATCTCGTGATCTTGCTACCATAATAAGCCGC
GACGCCGTTGGTGACAGCACGCCCTTTCGAGTGCTTCGTTCTTGATACCC
CGGGGTCGCCTACAGCAATCTTCTCCGTTAATTCATTTGTTTCGCTCCCA
TGACTTTGACTTCCCAGCTTGGCTCGAAAATGCGGGTTTCTCAGCGAGGC
GTTCTGAGCAAACCGCGGTCATGGGTGTTACCTTCTCCCTCCGCCTGGTT
CTTGCCTTGTGTTCTAATCGCGCACAGGGTTCAGCATTCCCACATATCGT
CACATCGTTTCGTCGAACTACTGTGCTTATTCGTGTTCTCTCTCCCGCTT
TCCGACCCGGGATTTCTTGTATGCAGAAATTTGGTTACCTAGACCAGGAC
AACACTTCCGGCCCCGAGGACGGCCCGGAGCAGTACATCGTATACGGCGG
ATTCCCCGCCTCTTCTACTGCGTCATCATCTTCGGAAGAATACCCCCTTG
GCCAGTACTGGCTGGTTGTCCACAACTACAGCAATGACTACGCCCGGTTC
AAGCTGACCGCTACCACCGGAAGTGGTGAAGTTATCCTAGACGAGGAAGG
CACCATCGATCCCGAGTGCGGAGGCGAGAATCTGGCCCGCTTTTTCCGTG
TGGACCTTTCCGGGTATGTAGACAACGACTGCGACCTCCCCGACATGGCC
CAGATCGAGGGGGAGGTGGCAGCGGAAGGGGATCAGCCAACAAAGGACTA
ACAGAGCAGAAGGAGCTGAGGTATTGAGAAGGCTTTGCCGTGCTGTTGAA
ATGTTGAGAGCTGGATCTACCGCGGGTTGTCGCCACCCCCAACAAGTGGC
GAGGAATGCATACACTGTTTAACCAGCCGAACTGCACGTTGCAGCTTGAA
ACAATCAGGCGGCGAAGCAGAGGAGGATACACGAAGCGAAGTGATACCAC
CATCAGTGGCACCAGCACGCTGTAGTGGCCAGCGACTGTATACGGCTTAT
ACCGTAAATAGAGTACTAATATTAACAATAATATTGCAGGTCCAATATAG
AGGTCGTTTTGCTTTGCCTGGCGCACACGGCTGCAGAGCACTCGCGTTCT
TGGCGTATATACACAAATCAGCGACCTCAACGCAGCCCAGTACCAAACGT
CCCGGGTCCGTGTGGTTTAGAGGTTTTCCGGTTGGTGCAATATGGCCGGC
ACCCTACCTAAGACGGGGGAATAAAGCAGTCGGGTGATTCCATGAGAAGA
ACCCCTTTTTGTTTTATTCTAGACAATCTTGATGCCTATGTGTTCTTCAA
GCATGGGCGGAACAAGATGAAACCTTTCCATTTATTTTAAACATTGTTGT
GGTGGGTCGATCTGGGGCGTTGTTGAGATCTCTGCGGCATCCTTGAGAAG
GTGCACTGTGTGAGTCGAATGGCGCCACCTACCGAAAGAGACTTACCGCG
ACTAACTGCAGCATCGTTGCGACTCGAATAAAAAAAACAATGGACACGCA
CAACGACAAGCAGAGCCCCAAAATTAGTCACTGCAACCGGTCAATTGTGT
GTGTGGAACCATGAAT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1033:26186..30651+

>mRNA_D-herbacea_F_contig1033.447.1 ID=mRNA_D-herbacea_F_contig1033.447.1|Name=mRNA_D-herbacea_F_contig1033.447.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2136bp|location=Sequence derived from alignment at D-herbacea_F_contig1033:26186..30651+ (Desmarestia herbacea DmunF female)
ATGAAGACTCAATCAGTAGCGATCGCCTCCGTTCTCGGCGTTCTGTTCGC
CGGCTTTACCGTTACCGAGGCCGGCAAGGAAACCATCGAAGTAACCGAGG
GCGCCGTGACGTTTACGGTGGACACGTATGACGACGGGCGAAACAAACCG
TACAGGGTAACCTGGAACGACCCCGATGATGGCTTCTTATGCCAATTCAA
GTTCAACATGGACGGCGTCGTGACCAACATTGAGACCGACGGCGACACGT
ACAAGGTCTTGTACGGGAGCAACGGTAATCTGAGGAGAGTGAGGCGTACG
AGCTCGAGGCGCACTCTTACCGAAGGAGGACAGGGTGTTGTTGCCGAGGT
GGTTGACGCCAACGATTCCATCCACACTGGTGGCCACCGTCGACTGTACG
ACTGCGGAGATTGTGAAGATACGGTGAACACGCTCGTGAGCAACGGTGCG
CCTTCCGTGTGCAACTTGGTTGGCTACGGCGACCCGATTCTCGATTCAGC
GGCGAGGTCAATAGACGTCTTCTGCGATAACTTTCAGTTGCTGATAGCTG
AGGAGGCTTGCGAAGGTCAATGCGAAAGCGAATGCCTTGCGCCGCTCACG
GTCGCGCTGGAGTGGTTTGACGACGCCGATCTCGACCTGAGGGTGGCGGA
GCCTGGCGCAGGCGACAGAGTTTTCTACGGCAACCGTGGCGGGATGAAGA
CTCAATCAGTAGCGATCGCCTCCGTTCTCGGCGTTCTGTTCGCCGGCTTT
ACCGTTACCGAGGCCGGCAAGGAAACCATCGAAGTAACCGAGGGCGCCGT
GACGTTTACGGTGGACACGTATGACGACGGGCGAAACAAACCGTACAGGG
TAACCTGGAACGACCCCGATGATGGCTTCTTATGCCAATTCAAGTTCAAC
ATGGACGGCGTCGTGACCAACATTGAGACCGACGGCGACACGTACAAGGT
CTTGTACGGGAGCAACGGTAATCTGAGGAGAGTGAGGCGTACGAGCTCGA
GGCGCACTCTTACCGAAGGAGGACAGGGTGTTGTTGCCGAGGTGGTTGAC
GCCAACGATTCCATCCACACTGGTGGCCACCGTCGACTGTACGACTGCGG
AGATTGTGAAGATACGGTGAACACGCTCGTGAGCAACGGTGCGCCTTCCG
TGTGCAACTTGGTTGGCTACGGCGACCCGATTCTCGATTCAGCGGCGAGG
TCAATAGACGTCTTCTGCGATAACTTTCAGTTGCTGATAGCTGAGGAGGC
TTGCGAAGGTCAATGCGAAAGCGAATGCCTTGCGCCGCTCACGGTCGCGC
TGGAGTGGTTTGACGACGCCGATCTCGACCTGAGGGTGGCGGAGCCTGGC
GCAGGCGACAGAGTTTTCTACGGCAACCGTGGCGGGAAATTTGGTTACCT
AGACCAGGACAACACTTCCGGCCCCGAGGACGGCCCGGAGCAGTACATCG
TATACGGCGGATTCCCCGCCTCTTCTACTGCGTCATCATCTTCGGAAGAA
TACCCCCTTGGCCAGTACTGGCTGGTTGTCCACAACTACAGCAATGACTA
CGCCCGGTTCAAGCTGACCGCTACCACCGGAAGTGGTGAAGTTATCCTAG
ACGAGGAAGGCACCATCGATCCCGAGTGCGGAGGCGAGAATCTGGCCCGC
TTTTTCCGTGTGGACCTTTCCGGGTATGTAGACAACGACTGCGACCTCCC
CGACATGGCCCAGATCGAGGGGGAGGTGGCAGCGGAAGGGGATCAGCCAA
CAAAGGACTAAAAATTTGGTTACCTAGACCAGGACAACACTTCCGGCCCC
GAGGACGGCCCGGAGCAGTACATCGTATACGGCGGATTCCCCGCCTCTTC
TACTGCGTCATCATCTTCGGAAGAATACCCCCTTGGCCAGTACTGGCTGG
TTGTCCACAACTACAGCAATGACTACGCCCGGTTCAAGCTGACCGCTACC
ACCGGAAGTGGTGAAGTTATCCTAGACGAGGAAGGCACCATCGATCCCGA
GTGCGGAGGCGAGAATCTGGCCCGCTTTTTCCGTGTGGACCTTTCCGGGT
ATGTAGACAACGACTGCGACCTCCCCGACATGGCCCAGATCGAGGGGGAG
GTGGCAGCGGAAGGGGATCAGCCAACAAAGGACTAA
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