mRNA_D-herbacea_F_contig103.390.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig103.390.1
Unique NamemRNA_D-herbacea_F_contig103.390.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig103.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig103contigD-herbacea_F_contig103:55454..56840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005800.1
Exons2
Model size410
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927437.41832-CDS-D-herbacea_F_contig103:55453..556711622927437.41832-CDS-D-herbacea_F_contig103:55453..55671Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig103 55454..55671 -
1690790170.4267924-CDS-D-herbacea_F_contig103:55453..556711690790170.4267924-CDS-D-herbacea_F_contig103:55453..55671Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig103 55454..55671 -
1622927437.4324086-CDS-D-herbacea_F_contig103:56650..568401622927437.4324086-CDS-D-herbacea_F_contig103:56650..56840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig103 56651..56840 -
1690790170.4387705-CDS-D-herbacea_F_contig103:56650..568401690790170.4387705-CDS-D-herbacea_F_contig103:56650..56840Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig103 56651..56840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig103.390.1prot_D-herbacea_F_contig103.390.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig103 55454..56840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig103.390.1

>prot_D-herbacea_F_contig103.390.1 ID=prot_D-herbacea_F_contig103.390.1|Name=mRNA_D-herbacea_F_contig103.390.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=136bp
TVCRSQFSVGAGSAMTRVRQSRLWLSLRIVMMLPLARETLGWIIQLPGYH
VQTTRSMATQQDAGVSPLRPSTRRFSSLPATFRPRATRRRSTIARASTIA
RASSSGDDAGDAASEQGQQKSTEGDTPILYIKGLNQ
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mRNA from alignment at D-herbacea_F_contig103:55454..56840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig103.390.1 ID=mRNA_D-herbacea_F_contig103.390.1|Name=mRNA_D-herbacea_F_contig103.390.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1387bp|location=Sequence derived from alignment at D-herbacea_F_contig103:55454..56840- (Desmarestia herbacea DmunF female)
ACTGTCTGTCGTTCACAGTTCAGCGTTGGCGCTGGCTCAGCTATGACTCG
AGTTAGACAGTCTCGACTATGGCTATCTTTGCGTATAGTTATGATGCTCC
CTCTGGCTAGGGAAACGTTGGGTTGGATCATCCAGCTGCCGGGGTACCAC
GTGCAAACAACCAGGTCGATGGCTACGCAACAAGATGCAGGTACATGCTC
ATACTCATATAATACGTATTAGGCGAGTATTGCAAAGCCCTACTATGATC
TTATAGGTATGATTGCTCGTACACTACGTGCTACTGGCGTCGGTGCAACC
TCGCTTCACACGCACGTCGAAAGGAGAAATGACATGTTTGATCCTTCTTC
GCGAGACTGTAGCTAACGGTGCACAAGCATTAATTGCTGTGTTCCGGTCA
CGTGCTACACTTTTTTTTTTAGTTCTGTACATAACCGTTTTTTTTTTTTT
TTTGCCGTCCCATTTATTATCTTCGCCCTAGTCTTACTCTAGCTCCATCT
CTCTTCGTAACTCAGATCCGGGGTCACGTAGTAGGCGCTCCTCCCTCCTT
CCCACTACGGTACGTGCCTACATTTTTGTCGCGAGAAGAGTGCAGCACTT
TCTTCCCTCGTCGACTTTCATCGAATTGTGCTGCCAGCGCTCTTCTTGCG
TGTTCCGCGACGGAAAATGACACAGAAATGTGCCACCGGGAATCGAACCC
CCAACTTCCGCCAACAGAGGAAATACCCTAGCCATTAGACCACTGGGCCA
CCCCTGTCCTACAGTAGTAGTATCATAGTATTGTTCCAGGAAACATGTGT
CGCCGCCGCCCAATACGTCCTCAATCATAACGTTCCGGCCGTGTGCCGTG
CTTCTCGTGTCAAACCGCACTCTCTTCCATCTGCATACTGCGCCGCCTTC
TTTTCCTTCCAGCTGCTCTGGCTTTATGAAATGCACACATAACTACTCGG
AGTGTTGGCACGACAGAGCCTTCTTTCTGTTGTATTGCGTATGATATTTC
CCCCTTGCTTGATCTTCCTCTGTCCTGCCTCTTATGATCCCGACACCTGC
TGCTGCCGTCGTGTTCGTTCCTCGCACCCCCCCCCCCGTACTAATTGCTG
CTCCATCTTTCCTCGCAAAACGCTCCCATTGTCCAAACGTGCCGTTCCGT
CAAACCAAAACACCGAAAGGTGTTTCACCCCTGCGACCAAGCACGCGTCG
GTTTTCGTCCCTTCCGGCAACATTCCGACCCCGTGCGACACGAAGACGGT
CAACCATCGCTCGCGCGTCGACCATCGCTCGCGCTTCTTCCAGCGGGGAC
GATGCGGGCGATGCTGCCTCAGAGCAAGGACAACAGAAATCCACCGAGGG
CGACACCCCTATACTGTACATCAAGGGTCTGAACCAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig103:55454..56840-

>mRNA_D-herbacea_F_contig103.390.1 ID=mRNA_D-herbacea_F_contig103.390.1|Name=mRNA_D-herbacea_F_contig103.390.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=816bp|location=Sequence derived from alignment at D-herbacea_F_contig103:55454..56840- (Desmarestia herbacea DmunF female)
ACTGTCTGTCGTTCACAGTTCAGCGTTGGCGCTGGCTCAGCTATGACTCG
AGTTAGACAGTCTCGACTATGGCTATCTTTGCGTATAGTTATGATGCTCC
CTCTGGCTAGGGAAACGTTGGGTTGGATCATCCAGCTGCCGGGGTACCAC
GTGCAAACAACCAGGTCGATGGCTACGCAACAAGATGCAGACTGTCTGTC
GTTCACAGTTCAGCGTTGGCGCTGGCTCAGCTATGACTCGAGTTAGACAG
TCTCGACTATGGCTATCTTTGCGTATAGTTATGATGCTCCCTCTGGCTAG
GGAAACGTTGGGTTGGATCATCCAGCTGCCGGGGTACCACGTGCAAACAA
CCAGGTCGATGGCTACGCAACAAGATGCAGGTGTTTCACCCCTGCGACCA
AGCACGCGTCGGTTTTCGTCCCTTCCGGCAACATTCCGACCCCGTGCGAC
ACGAAGACGGTCAACCATCGCTCGCGCGTCGACCATCGCTCGCGCTTCTT
CCAGCGGGGACGATGCGGGCGATGCTGCCTCAGAGCAAGGACAACAGAAA
TCCACCGAGGGCGACACCCCTATACTGTACATCAAGGGTCTGAACCAGGT
GTTTCACCCCTGCGACCAAGCACGCGTCGGTTTTCGTCCCTTCCGGCAAC
ATTCCGACCCCGTGCGACACGAAGACGGTCAACCATCGCTCGCGCGTCGA
CCATCGCTCGCGCTTCTTCCAGCGGGGACGATGCGGGCGATGCTGCCTCA
GAGCAAGGACAACAGAAATCCACCGAGGGCGACACCCCTATACTGTACAT
CAAGGGTCTGAACCAG
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