mRNA_D-herbacea_F_contig1028.386.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.386.1
Unique NamemRNA_D-herbacea_F_contig1028.386.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A0U2LTP8_9PHAE (ATP synthase subunit 9, mitochondrial n=153 Tax=Stramenopiles TaxID=33634 RepID=A0A0U2LTP8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 8.080e-37
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 225
            MLVQAAKLLGAGLATIGLAGAGVGIGTVF ALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL
Sbjct:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFAALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 75
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: Q3S284_THAPS (ATP synthase subunit 9, mitochondrial n=16 Tax=Bacillariophyta TaxID=2836 RepID=Q3S284_THAPS)

HSP 1 Score: 118 bits (296), Expect = 1.840e-33
Identity = 66/75 (88.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 225
            ML+QAAK +GAGLATIGLAGAGVGIGTVFGALV+G +RNPSLKDELF++AILGFALTEAIALF+LMMAFLILFAL
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFGALVIGVSRNPSLKDELFKLAILGFALTEAIALFSLMMAFLILFAL 75
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BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A8F0FD85_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD85_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.610e-33
Identity = 66/74 (89.19%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFA 222
            MLVQA+K+LGAGLATIGL GAGVGIGTVFGALVLG +RNP+LKDELF+ AILGFALTEAIALFALMMAFLILFA
Sbjct:    1 MLVQASKILGAGLATIGLTGAGVGIGTVFGALVLGVSRNPTLKDELFKFAILGFALTEAIALFALMMAFLILFA 74
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BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A2U9GIF0_9STRA (ATP synthase subunit 9, mitochondrial n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2U9GIF0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.510e-32
Identity = 64/74 (86.49%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFA 222
            ML+QAAK +GAGLATIGLAGAGVGIGTVFGALV+G +RNPSLKDE+FR+AILGFALTEAIALFALM+AFL+LFA
Sbjct:    1 MLLQAAKCVGAGLATIGLAGAGVGIGTVFGALVIGISRNPSLKDEMFRMAILGFALTEAIALFALMIAFLVLFA 74
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BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A649UBP4_AURAN (ATP synthase subunit 9, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A649UBP4_AURAN)

HSP 1 Score: 114 bits (285), Expect = 8.760e-32
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 225
            M++QAAKL+GAGL+TIGL GAGVGIG+VF AL+LG +RNPSLKDELFR+AILGFALTEAIALFALMM FLILFAL
Sbjct:    1 MILQAAKLIGAGLSTIGLVGAGVGIGSVFAALILGISRNPSLKDELFRVAILGFALTEAIALFALMMGFLILFAL 75
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BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: D2Z269_HETAK (ATP synthase subunit 9, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z269_HETAK)

HSP 1 Score: 114 bits (285), Expect = 8.760e-32
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFA 222
            ML+QAAK +GAGLATIGLAGAGVGIGTVF ALVLGT+RNPS+KD+LFR AILGFALTEA ALFALM+AFLILFA
Sbjct:    1 MLLQAAKFVGAGLATIGLAGAGVGIGTVFSALVLGTSRNPSIKDDLFRFAILGFALTEATALFALMVAFLILFA 74
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A1J0RD98_9STRA (ATP synthase subunit 9, mitochondrial n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1J0RD98_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.240e-31
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 225
            ML+QAAK +GAGLATIGLAGAG GIGTVFG+LVLG +RNP LKDELF++AILGFALTEAIALFALM+AFLILFAL
Sbjct:    1 MLLQAAKCIGAGLATIGLAGAGAGIGTVFGSLVLGISRNPKLKDELFKMAILGFALTEAIALFALMIAFLILFAL 75
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A8E8U4W3_9PHAE (ATP synthase subunit 9, mitochondrial n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4W3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.770e-31
Identity = 60/75 (80.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFAL 225
            ML+QA+KL+G GLATIGL GAGVGIGTVFG+L++GT+RNPS+K+ELF++A+LGFALTEAIALFALM+AFLILFAL
Sbjct:    1 MLLQASKLIGGGLATIGLTGAGVGIGTVFGSLIIGTSRNPSMKEELFKLAVLGFALTEAIALFALMVAFLILFAL 75
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A4Y5T8G9_9PHAE (ATP synthase subunit 9, mitochondrial n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T8G9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.570e-31
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILFA 222
            M  ++A+L+GAGLATIGLAGAGVGIGTVFGALVLGTARNPS+K++LFR AILGFALTEAIALFALMMAFLILF+
Sbjct:    1 MSYRSAQLIGAGLATIGLAGAGVGIGTVFGALVLGTARNPSIKNDLFRFAILGFALTEAIALFALMMAFLILFS 74
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Match: A0A5B9IQ06_9STRA (ATP synthase subunit 9, mitochondrial n=1 Tax=Cafileria marina TaxID=2557541 RepID=A0A5B9IQ06_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.070e-31
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIAILGFALTEAIALFALMMAFLILF 219
            ML+ AAKL+GAGLATIGLAGAGVGIG VFG+LVLG +RNP+ KDELFR+AILGFALTEAIALFALMMAFLILF
Sbjct:    1 MLLSAAKLIGAGLATIGLAGAGVGIGNVFGSLVLGVSRNPNEKDELFRLAILGFALTEAIALFALMMAFLILF 73
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2LTP8_9PHAE8.080e-3798.67ATP synthase subunit 9, mitochondrial n=153 Tax=St... [more]
Q3S284_THAPS1.840e-3388.00ATP synthase subunit 9, mitochondrial n=16 Tax=Bac... [more]
A0A8F0FD85_9PHAE2.610e-3389.19ATP synthase subunit 9, mitochondrial n=1 Tax=Prot... [more]
A0A2U9GIF0_9STRA1.510e-3286.49ATP synthase subunit 9, mitochondrial n=3 Tax=Euka... [more]
A0A649UBP4_AURAN8.760e-3284.00ATP synthase subunit 9, mitochondrial n=3 Tax=cell... [more]
D2Z269_HETAK8.760e-3286.49ATP synthase subunit 9, mitochondrial n=1 Tax=Hete... [more]
A0A1J0RD98_9STRA1.240e-3185.33ATP synthase subunit 9, mitochondrial n=4 Tax=Baci... [more]
A0A8E8U4W3_9PHAE1.770e-3180.00ATP synthase subunit 9, mitochondrial n=2 Tax=Phae... [more]
A0A4Y5T8G9_9PHAE3.570e-3185.14ATP synthase subunit 9, mitochondrial n=1 Tax=Ishi... [more]
A0A5B9IQ06_9STRA5.070e-3186.30ATP synthase subunit 9, mitochondrial n=1 Tax=Cafi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:84954..85181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score95.9
Seed ortholog evalue8.6e-18
Seed eggNOG ortholog588596.E2JE47
Preferred nameatp9
KEGG rclassRC00061
KEGG koko:K02128,ko:K03880
KEGG TC3.A.2.1,3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map05010,map05012,map05016
KEGG ModuleM00142,M00158
Hectar predicted targeting categorysignal anchor
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033177,GO:0034220,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
EggNOG free text desc.Belongs to the ATPase C chain family
EggNOG OGs3A3YG@33154,3P7BC@4751,COG0636@1,KOG3025@2759
EC1.6.5.3
COG Functional cat.P
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927437.1127927-CDS-D-herbacea_F_contig1028:84953..851811622927437.1127927-CDS-D-herbacea_F_contig1028:84953..85181Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 84954..85181 -
1690790170.2410643-CDS-D-herbacea_F_contig1028:84953..851811690790170.2410643-CDS-D-herbacea_F_contig1028:84953..85181Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 84954..85181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.386.1prot_D-herbacea_F_contig1028.386.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 84954..85181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.386.1

>prot_D-herbacea_F_contig1028.386.1 ID=prot_D-herbacea_F_contig1028.386.1|Name=mRNA_D-herbacea_F_contig1028.386.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=76bp
MLVQAAKLLGAGLATIGLAGAGVGIGTVFGALVLGTARNPSLKDELFRIA
ILGFALTEAIALFALMMAFLILFAL*
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mRNA from alignment at D-herbacea_F_contig1028:84954..85181-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.386.1 ID=mRNA_D-herbacea_F_contig1028.386.1|Name=mRNA_D-herbacea_F_contig1028.386.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=228bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84954..85181- (Desmarestia herbacea DmunF female)
ATGTTAGTTCAAGCTGCTAAACTTTTAGGTGCTGGTCTAGCGACCATAGG
TCTTGCTGGAGCAGGTGTGGGTATTGGAACCGTTTTTGGTGCTCTTGTTT
TGGGTACTGCTCGTAATCCTTCCCTGAAAGATGAGTTATTTAGAATTGCA
ATTTTGGGTTTCGCTTTAACTGAAGCGATTGCTCTGTTTGCTTTAATGAT
GGCTTTCTTGATTTTATTTGCTCTGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:84954..85181-

>mRNA_D-herbacea_F_contig1028.386.1 ID=mRNA_D-herbacea_F_contig1028.386.1|Name=mRNA_D-herbacea_F_contig1028.386.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=456bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:84954..85181- (Desmarestia herbacea DmunF female)
ATGTTAGTTCAAGCTGCTAAACTTTTAGGTGCTGGTCTAGCGACCATAGG
TCTTGCTGGAGCAGGTGTGGGTATTGGAACCGTTTTTGGTGCTCTTGTTT
TGGGTACTGCTCGTAATCCTTCCCTGAAAGATGAGTTATTTAGAATTGCA
ATTTTGGGTTTCGCTTTAACTGAAGCGATTGCTCTGTTTGCTTTAATGAT
GGCTTTCTTGATTTTATTTGCTCTGTAAATGTTAGTTCAAGCTGCTAAAC
TTTTAGGTGCTGGTCTAGCGACCATAGGTCTTGCTGGAGCAGGTGTGGGT
ATTGGAACCGTTTTTGGTGCTCTTGTTTTGGGTACTGCTCGTAATCCTTC
CCTGAAAGATGAGTTATTTAGAATTGCAATTTTGGGTTTCGCTTTAACTG
AAGCGATTGCTCTGTTTGCTTTAATGATGGCTTTCTTGATTTTATTTGCT
CTGTAA
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