mRNA_D-herbacea_F_contig1028.382.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.382.1
Unique NamemRNA_D-herbacea_F_contig1028.382.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A2R4QQ51_9PHAE (Uncharacterized protein n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ51_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.290e-68
Identity = 117/131 (89.31%), Postives = 118/131 (90.08%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKVKLLHNKT 357
            MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL            IIMIMYSKLQDLKEDILDLSSKM+CIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFK KLLHNKT
Sbjct:    2 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPLYLMPPKQCIGCPIIMIMYSKLQDLKEDILDLSSKMDCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKFKLLHNKT 132          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: E6ZER5_ECTSI (Conserved hypothetical mitochondrial protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.140e-30
Identity = 62/125 (49.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKVK 339
            M+TPRK++LRKKR F+  ++TFA+FNASNLKTSKI +I+L  K+ KLYF+PL            +I+I+Y++L+D++++I  ++SK++CIGVSI+ KWY  K FE   +KNL  K L+L L ++K
Sbjct:    1 MFTPRKRHLRKKRFFLSKQKTFALFNASNLKTSKITEIRLFLKNAKLYFIPLYLNPPKLGLGYPLIIIIYNELKDMQKNIPIIASKVDCIGVSIEKKWYPIKNFENTNLKNLDKKILSLFLLQIK 125          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A5K1KEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A5K1KEM9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 9.290e-30
Identity = 60/124 (48.39%), Postives = 90/124 (72.58%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKV 336
            M+TPRK++LRKKR F+  ++TFA+FNASNLKTSKI +I+L  K+ KLYF+PL            +I+++Y+KL++++++I  ++SK++CIGVSI+ KWY  K FE   +K L  K L LLL ++
Sbjct:    1 MFTPRKRHLRKKRFFLSKQKTFALFNASNLKTSKITEIRLSLKNAKLYFIPLYLNPPKLGTGYPLIIVIYNKLENMQKNIPTIASKIDCIGVSIEKKWYPIKIFENNNLKKLDKKILGLLLLQI 124          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: F8UWL7_9PHAE (Uncharacterized protein ORF130 n=19 Tax=Saccharina TaxID=309357 RepID=F8UWL7_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.000e-29
Identity = 59/123 (47.97%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFK 333
            M+TPRK++LRKKR F+  ++TFA+FN SNLK+S+I KI++  K+ KLY VPL            I+MI+Y  LQDL++++ +++SK++C+G+SI  KWYS K+ EK   + L  K L+LLL K
Sbjct:    1 MFTPRKRHLRKKRFFLPEQRTFALFNGSNLKSSQISKIRVSLKNAKLYSVPLYLNPPKLGIGCPIVMIIYETLQDLQDNVPEIASKLDCLGISIDKKWYSIKFLEKSNTETLKKKALSLLLIK 123          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A0G2RKW4_TUROR (Uncharacterized protein n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKW4_TUROR)

HSP 1 Score: 109 bits (273), Expect = 1.560e-28
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLL 327
            M T RKKYLRKKR F+  + TF +FNASNLKTSKI+K+K     G++YFVPL            +++ +Y  L+D++ +I D++++++C+GVSI+ KWYS KY +K KI  L  KTLALLL
Sbjct:    1 MSTARKKYLRKKRLFLSKQVTFVLFNASNLKTSKIKKVKTSLIGGRIYFVPLYLTPPKIAVGCPVLIAVYDSLKDMQNNIADITAQIDCLGVSIEKKWYSIKYLKKSKILGLEKKTLALLL 121          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: D0IPU2_SACAN (Uncharacterized protein ORF130 n=6 Tax=Laminariaceae TaxID=33636 RepID=D0IPU2_SACAN)

HSP 1 Score: 108 bits (271), Expect = 3.230e-28
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFK 333
            M+TPRK++LRKKR F+  ++TFA+FN SNLK+S+I KI++  ++ KLY VPL            IIMI+Y  LQDL++++ +++SK++C+G+SI  KWYS K+ EK     L  K L+LLL K
Sbjct:    1 MFTPRKRHLRKKRFFLPEQRTFALFNGSNLKSSQISKIRISLQNAKLYSVPLYLNPPKLGIGCPIIMIIYETLQDLQDNVPEIASKLDCLGISIDKKWYSIKFLEKSNTATLKKKALSLLLIK 123          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: Q2TUF9_9PHAE (Uncharacterized protein orf143 n=1 Tax=Desmarestia viridis TaxID=62313 RepID=Q2TUF9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.300e-28
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLF---KVKLLHNKT 357
            M+TPRK++LRKKR F+ N+QTFA+ N SNLK SK+ KIKL  K+GKLY VPL            +IM++Y  +++L+++I  +S +++C+G+SI  KWY   + E  K  NL  KTLALLL    K+K+ +N +
Sbjct:    1 MFTPRKRHLRKKRFFLPNQQTFALLNGSNLKASKLSKIKLSLKNGKLYSVPLYLSPPKIGAGCPLIMVVYENVEELQKNIAKISVEIDCLGISIDKKWYPINFLENGKTNNLYQKTLALLLVQSSKIKITYNSS 134          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A8F0K1C4_9PHAE (Uncharacterized protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0K1C4_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.380e-28
Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKVKLLHNK 354
            M+TPRK++LRKKR F+  ++TFA+FN SNLKTS+I KI+LL ++ KLYFVPL            +IMI+Y  + DL+ +I  ++ +++C+G+SI+ KWY     +K   K L+ KTL+LLL K   + NK
Sbjct:    1 MFTPRKRHLRKKRFFLPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYFVPLYLNPPKQSLGCPLIMIIYETMHDLQTNIPKIALQLDCLGISIERKWYPFNLLKKSNSKTLNKKTLSLLLIKYNTIKNK 130          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A068LGL3_9PHAE (Uncharacterized protein n=2 Tax=Sargassum horneri TaxID=74089 RepID=A0A068LGL3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.270e-27
Identity = 56/124 (45.16%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLLFKV 336
            M T RKK+LRKKR F+  ++ FA+ NASNLKTSKI+KIK+  + G+++FVPL            +++++Y  L+D++ +I +++  +NC+G+SI+ KWYS KY ++ KI  L  +TLALLL K+
Sbjct:    1 MPTTRKKHLRKKRLFISKQENFALLNASNLKTSKIKKIKMSLRGGRIFFVPLYLAPPKIATGCPVLILVYDNLKDMRNNIANIARLVNCLGISIEKKWYSIKYLKESKILGLEKRTLALLLLKL 124          
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Match: A0A8F0FC24_AKKLU (Uncharacterized protein n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0FC24_AKKLU)

HSP 1 Score: 107 bits (267), Expect = 1.270e-27
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1
Query:    1 MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFVPL------------IIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNLSIKTLALLL 327
            M TPRK++LRKKR F+  + TFA+FNASNLK SK+ KI+L   +GKLY VPL            +IMI+Y  L+DL++++ + +S+++C+GVSI+ KWYS+ +FE  +  NL  KTL LLL
Sbjct:    1 MSTPRKRHLRKKRFFLPKQHTFALFNASNLKASKVAKIRLSLTNGKLYSVPLYLTPPKLGAGCPLIMIIYDTLEDLQKNLTETASQIDCLGVSIEKKWYSSDFFEGGRTTNLEKKTLGLLL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ51_9PHAE3.290e-6889.31Uncharacterized protein n=3 Tax=Fucus TaxID=3011 R... [more]
E6ZER5_ECTSI1.140e-3049.60Conserved hypothetical mitochondrial protein n=1 T... [more]
A0A5K1KEM9_ECTSI9.290e-3048.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F8UWL7_9PHAE8.000e-2947.97Uncharacterized protein ORF130 n=19 Tax=Saccharina... [more]
A0A0G2RKW4_TUROR1.560e-2849.59Uncharacterized protein n=1 Tax=Turbinaria ornata ... [more]
D0IPU2_SACAN3.230e-2847.97Uncharacterized protein ORF130 n=6 Tax=Laminariace... [more]
Q2TUF9_9PHAE3.300e-2846.27Uncharacterized protein orf143 n=1 Tax=Desmarestia... [more]
A0A8F0K1C4_9PHAE8.380e-2846.15Uncharacterized protein n=2 Tax=Ecklonia TaxID=105... [more]
A0A068LGL3_9PHAE1.270e-2745.16Uncharacterized protein n=2 Tax=Sargassum horneri ... [more]
A0A8F0FC24_AKKLU1.270e-2749.59Uncharacterized protein n=1 Tax=Akkesiphycus lubri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:79870..80229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.9152343-CDS-D-herbacea_F_contig1028:79869..802291622927436.9152343-CDS-D-herbacea_F_contig1028:79869..80229Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 79870..80229 +
1690790170.182872-CDS-D-herbacea_F_contig1028:79869..802291690790170.182872-CDS-D-herbacea_F_contig1028:79869..80229Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 79870..80229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.382.1prot_D-herbacea_F_contig1028.382.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 79870..80229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.382.1

>prot_D-herbacea_F_contig1028.382.1 ID=prot_D-herbacea_F_contig1028.382.1|Name=mRNA_D-herbacea_F_contig1028.382.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=120bp
MYTPRKKYLRKKRAFVYNEQTFAIFNASNLKTSKIEKIKLLSKSGKLYFV
PLIIMIMYSKLQDLKEDILDLSSKMNCIGVSIQNKWYSTKYFEKKKIKNL
SIKTLALLLFKVKLLHNKT*
back to top

mRNA from alignment at D-herbacea_F_contig1028:79870..80229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.382.1 ID=mRNA_D-herbacea_F_contig1028.382.1|Name=mRNA_D-herbacea_F_contig1028.382.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=360bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:79870..80229+ (Desmarestia herbacea DmunF female)
ATGTACACACCTAGAAAAAAATATTTAAGAAAAAAGAGAGCGTTTGTTTA TAATGAGCAAACTTTTGCTATTTTTAACGCAAGCAACTTAAAAACCTCTA AGATAGAAAAAATAAAATTATTATCAAAATCAGGAAAACTGTATTTTGTA CCACTAATAATAATGATTATGTATTCTAAATTACAGGATCTTAAAGAGGA TATCCTGGATTTATCGTCAAAGATGAATTGTATCGGTGTATCGATACAAA ATAAATGGTATTCCACAAAATACTTTGAAAAAAAAAAAATAAAAAACTTA AGCATAAAAACTTTAGCTCTTCTTTTATTTAAAGTTAAGCTATTACACAA TAAAACTTAA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:79870..80229+

>mRNA_D-herbacea_F_contig1028.382.1 ID=mRNA_D-herbacea_F_contig1028.382.1|Name=mRNA_D-herbacea_F_contig1028.382.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=720bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:79870..80229+ (Desmarestia herbacea DmunF female)
ATGTACACACCTAGAAAAAAATATTTAAGAAAAAAGAGAGCGTTTGTTTA
TAATGAGCAAACTTTTGCTATTTTTAACGCAAGCAACTTAAAAACCTCTA
AGATAGAAAAAATAAAATTATTATCAAAATCAGGAAAACTGTATTTTGTA
CCACTAATAATAATGATTATGTATTCTAAATTACAGGATCTTAAAGAGGA
TATCCTGGATTTATCGTCAAAGATGAATTGTATCGGTGTATCGATACAAA
ATAAATGGTATTCCACAAAATACTTTGAAAAAAAAAAAATAAAAAACTTA
AGCATAAAAACTTTAGCTCTTCTTTTATTTAAAGTTAAGCTATTACACAA
TAAAACTTAAATGTACACACCTAGAAAAAAATATTTAAGAAAAAAGAGAG
CGTTTGTTTATAATGAGCAAACTTTTGCTATTTTTAACGCAAGCAACTTA
AAAACCTCTAAGATAGAAAAAATAAAATTATTATCAAAATCAGGAAAACT
GTATTTTGTACCACTAATAATAATGATTATGTATTCTAAATTACAGGATC
TTAAAGAGGATATCCTGGATTTATCGTCAAAGATGAATTGTATCGGTGTA
TCGATACAAAATAAATGGTATTCCACAAAATACTTTGAAAAAAAAAAAAT
AAAAAACTTAAGCATAAAAACTTTAGCTCTTCTTTTATTTAAAGTTAAGC
TATTACACAATAAAACTTAA
back to top