mRNA_D-herbacea_F_contig1028.379.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.379.1
Unique NamemRNA_D-herbacea_F_contig1028.379.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A2R4QQ81_9PHAE (Ribosomal protein L2 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ81_9PHAE)

HSP 1 Score: 493 bits (1270), Expect = 5.100e-175
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRRSK 735
            MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTN KKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRRSK
Sbjct:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNIKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRRSK 245
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A8F0FEI3_9PHAE (Ribosomal protein L2 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0FEI3_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 1.340e-134
Identity = 190/242 (78.51%), Postives = 211/242 (87.19%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTR 726
            M  +KQ  +TPPLKSQ   WN S GRNN GHITAWHRGGGH +L+R++DLKR STQGI+VG+EYDPNRS F+ARIFNPDTKKH YIIAPT  K+GDIIRSNSTRNG+QNGHSKTL+ I TG+ IYNLS+ PGKNGKILRA G+ G+I+K+T  LAKIRLKSGQYRWFDIKT+AT GIVSN+  RF KL+KAGQSRWLGKRP VRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKG  TR
Sbjct:    1 MKQEKQTFITPPLKSQRKTWNYSIGRNNKGHITAWHRGGGHSKLYRDIDLKRKSTQGIVVGLEYDPNRSAFLARIFNPDTKKHNYIIAPTKIKRGDIIRSNSTRNGLQNGHSKTLQNILTGSLIYNLSLSPGKNGKILRAPGAFGRILKRTKTLAKIRLKSGQYRWFDIKTIATNGIVSNTYSRFTKLRKAGQSRWLGKRPTVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGPSTR 242
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A8F0FDE7_9PHAE (Ribosomal protein L2 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FDE7_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 2.540e-133
Identity = 187/243 (76.95%), Postives = 213/243 (87.65%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRR 729
            M   KQ  L+PPLK+QT + N S GRN+ G ITAWHRGGGH RL+R++DLKR STQGI++G+EYDPNRS F+ARIFNPDTKKH+YIIAPT  +KGD+IRSNSTRNG+QNGHSKTL+YI TG+ IYNLS+ PGK GKILRA G+ G+I+K+T  LAKIRLKSGQYRWFDI+TMAT G+VSNS+ RF KL KAGQSRWLG+RPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKG  TRR
Sbjct:    1 MEQNKQFFLSPPLKAQTRSLNPSTGRNHKGRITAWHRGGGHARLYRDIDLKRKSTQGIVIGLEYDPNRSAFLARIFNPDTKKHSYIIAPTRIQKGDVIRSNSTRNGLQNGHSKTLRYILTGSLIYNLSIQPGKEGKILRAPGAFGKILKRTKSLAKIRLKSGQYRWFDIQTMATNGVVSNSDSRFTKLYKAGQSRWLGRRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGPSTRR 243
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: V9PAM2_UNDPI (Ribosomal protein L2 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PAM2_UNDPI)

HSP 1 Score: 382 bits (981), Expect = 6.870e-131
Identity = 183/241 (75.93%), Postives = 208/241 (86.31%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKT 723
            M  KKQ  +TPPLK+Q   WN S GRNN GHITAWHRGGGH +LHRN+DLKR STQGI++G+EYDPNRS F+AR+FNPDT+K+ YIIAPT  K+GDIIRSNST+NG+QNGHSKTL+ I TG+ IYNLS+ PG NGK LRA G+ GQI+K+T  LAKIRLKSGQYRWF+IKT+AT G+VSN N RFIKL+KAGQSRWLG+RPIVRGVAMNPIDHPHGGGEGKTSGGR S TPWGKPTKG  T
Sbjct:    1 MKKKKQIFITPPLKAQKYGWNYSTGRNNKGHITAWHRGGGHSKLHRNIDLKRKSTQGIVIGLEYDPNRSAFLARVFNPDTQKNNYIIAPTQLKRGDIIRSNSTQNGLQNGHSKTLQNILTGSIIYNLSLSPGTNGKFLRAPGAFGQILKRTKTLAKIRLKSGQYRWFNIKTIATNGVVSNVNSRFIKLRKAGQSRWLGRRPIVRGVAMNPIDHPHGGGEGKTSGGRSSSTPWGKPTKGPST 241
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BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A8F0FCR5_9PHAE (Ribosomal protein L2 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FCR5_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 5.610e-130
Identity = 183/242 (75.62%), Postives = 206/242 (85.12%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTR 726
            M   KQ  +TPPLKS   NWN S GRNN GHITAWHRGGGH RL+R +DLKR STQGI++G+EYDPNR+ F+ARIFNPDTKKH YIIAPT  K+GDIIRSNST+NG QNGHSKTL+ I TG+ IYNLS+ PGK+GKILRA G+ G+I+K+T  LAKI LKSG+YRWFDI T+AT G+VSN+N RF KLKKAGQSRWLG+RP VRGVAMNPIDHPHGGGEGKTSGGR SVTPWGKPTKG  TR
Sbjct:    1 MKQNKQIFITPPLKSYRHNWNHSTGRNNKGHITAWHRGGGHSRLYRKIDLKRKSTQGIVIGLEYDPNRTAFLARIFNPDTKKHNYIIAPTKIKRGDIIRSNSTQNGFQNGHSKTLQNILTGSLIYNLSLYPGKDGKILRAPGAFGRILKRTKVLAKIHLKSGKYRWFDINTIATNGMVSNTNSRFTKLKKAGQSRWLGRRPTVRGVAMNPIDHPHGGGEGKTSGGRSSVTPWGKPTKGPSTR 242
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BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A8F0FD33_9PHAE (Ribosomal protein L2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD33_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 2.280e-129
Identity = 178/236 (75.42%), Postives = 206/236 (87.29%), Query Frame = 1 
Query:   22 LLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRR 729
             L+ PLKSQT  WN SNGRNN G+ITAWHRGGGH RL+RN+D +R +TQGI+VG+EYDPNRS F+AR+FNPDTKKH YI+APT  KKGDIIRSNS R G+QNGHSKTL++I  G+ I+NLSV PGK+GKILRA G+ GQI+K+T+ LAK+RLKS QYRWF I+TMAT G+VSN NY+F KLKKAGQSRWLG+RP VRGVAMNP+DHPHGGGEGKTSGGRPSVTPW KPTKG KT+R
Sbjct:    8 FLSQPLKSQTHAWNSSNGRNNQGYITAWHRGGGHARLYRNIDFQRKNTQGIVVGLEYDPNRSAFLARVFNPDTKKHNYILAPTKIKKGDIIRSNSIRGGLQNGHSKTLRHILAGSLIHNLSVQPGKDGKILRAPGAFGQIIKRTSALAKVRLKSKQYRWFAIETMATNGVVSNPNYQFKKLKKAGQSRWLGRRPTVRGVAMNPVDHPHGGGEGKTSGGRPSVTPWAKPTKGKKTKR 243
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: Q2TUF5_9PHAE (Ribosomal protein L2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF5_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 2.640e-128
Identity = 179/243 (73.66%), Postives = 209/243 (86.01%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRR 729
            M   KQ  ++ PLKSQT  WN S GRN+ G ITAWHRGGGH RL+RN+DLKR  TQGI+VG+EYDPNRS F+ARIFNPDTK+H+YIIAPT  +KGDIIRSNS RNG+QNGHSK L++I T + +YNLS++PG+NGKILRA GS G+++K+T+ L KIRLKSGQ+RWF+I+TMAT G VSN N RF+KLKKAGQSRWLG+RPIVRGVAMNP+DHPHGGGEGKTSGGRPSVTPW KPTKG  TRR
Sbjct:    1 MKQNKQFFISKPLKSQTHAWNPSTGRNHKGRITAWHRGGGHARLYRNIDLKRKLTQGIVVGLEYDPNRSAFLARIFNPDTKEHSYIIAPTKLQKGDIIRSNSKRNGVQNGHSKALRHILTDSLVYNLSLLPGENGKILRAPGSFGRVLKRTSTLTKIRLKSGQFRWFNIETMATYGTVSNPNARFVKLKKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGKTSGGRPSVTPWAKPTKGPSTRR 243
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A8F0K125_9PHAE (Ribosomal protein L2 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K125_9PHAE)

HSP 1 Score: 375 bits (964), Expect = 2.640e-128
Identity = 180/243 (74.07%), Postives = 206/243 (84.77%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRR 729
            M + KQ  LT PLKSQT +WN S GRN+ G ITAWHRGGGH RL+R +DLKR  TQGI+VG+EYDPNRS F+AR+FNPDT KH YIIAPT+ +KGD+IRSNS RNG+QNGHSK L +I TG+ IYNLS+ PGK+GKILRA G+ G+I+K+T  LAK+RLKSG YRWFDI+TMAT GIVSN+  RF KL+KAGQSRWLG+RP VRGVAMNPIDHPHGGGEGKTSGGRPS TPWGKPTKG  TRR
Sbjct:    1 MKTNKQIFLTQPLKSQTKDWNTSTGRNHKGRITAWHRGGGHARLYRKIDLKRKLTQGIVVGLEYDPNRSAFLARVFNPDTNKHNYIIAPTDIQKGDVIRSNSKRNGLQNGHSKALGHILTGSLIYNLSLSPGKDGKILRAPGAFGKILKRTKTLAKVRLKSGHYRWFDIRTMATNGIVSNAESRFTKLRKAGQSRWLGRRPTVRGVAMNPIDHPHGGGEGKTSGGRPSATPWGKPTKGPSTRR 243
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: A0A516ICI0_9PHAE (Ribosomal protein L2 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICI0_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 1.070e-127
Identity = 179/245 (73.06%), Postives = 209/245 (85.31%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRRSK 735
            M   KQ  + PPLKSQ  +WN+S GRNN GHITAWHRGGGH RL+R++DLKR STQGI++G+EYDPNR+ F+ARIFNPDTKKH+YIIAPT  KKGD+IRSNSTRN +QNGHSKTL+ + TG+ IYNLS+ P  +GKILRA G+ G+I+K+T  LAKI LKSGQYRWFDIKT+AT+G+VSN + RF KL+KAG SRW+GKRP VRGVAMNPIDHPHGGGEGKTSGGR SVTPWGKPTKG  TR +K
Sbjct:    1 MKKTKQLFINPPLKSQKRSWNRSTGRNNKGHITAWHRGGGHARLYRDIDLKRISTQGIVIGLEYDPNRAAFLARIFNPDTKKHSYIIAPTKIKKGDVIRSNSTRNDMQNGHSKTLQNLLTGSIIYNLSLTPRNDGKILRAPGAFGRILKRTKTLAKIHLKSGQYRWFDIKTIATSGVVSNLDSRFTKLQKAGHSRWVGKRPTVRGVAMNPIDHPHGGGEGKTSGGRSSVTPWGKPTKGPSTRTNK 245
[Close]
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Match: Q8LWZ7_9PHAE (Ribosomal protein L2 n=47 Tax=Laminariales TaxID=2886 RepID=Q8LWZ7_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 1.070e-127
Identity = 184/242 (76.03%), Postives = 207/242 (85.54%), Query Frame = 1 
Query:    1 MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDLKRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRSNSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKKTNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKRPIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTR 726
            M   KQ  +TPPLKSQ   WN S GRNN G ITAWHRGGGH RL+R++DLKR STQGI+VG+EYDPNRS F+ARIFNPDTKK+ YIIAPT  KKGDIIRSNSTR+G+QNGHSKTL+ I TG+ IYNLS+ PGK+GKILRA G+ G+I+K+T  LAKIRLKSGQYRWFDIKT+AT G+VSN + RF KL+KAGQSRWLG+RP VRGVAMNPIDHPHGGGEGKTSGGR SVTPW KPTKG  TR
Sbjct:    1 MKQNKQIFITPPLKSQRRAWNHSTGRNNKGLITAWHRGGGHSRLYRDIDLKRKSTQGIVVGLEYDPNRSSFLARIFNPDTKKNNYIIAPTKIKKGDIIRSNSTRSGLQNGHSKTLQNILTGSLIYNLSLSPGKDGKILRAPGAFGRILKRTKTLAKIRLKSGQYRWFDIKTIATNGVVSNPDSRFTKLQKAGQSRWLGRRPTVRGVAMNPIDHPHGGGEGKTSGGRSSVTPWCKPTKGPSTR 242
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ81_9PHAE5.100e-17599.59Ribosomal protein L2 n=3 Tax=Fucus TaxID=3011 RepI... [more]
A0A8F0FEI3_9PHAE1.340e-13478.51Ribosomal protein L2 n=1 Tax=Postelsia palmaeformi... [more]
A0A8F0FDE7_9PHAE2.540e-13376.95Ribosomal protein L2 n=2 Tax=Laminariales TaxID=28... [more]
V9PAM2_UNDPI6.870e-13175.93Ribosomal protein L2 n=1 Tax=Undaria pinnatifida T... [more]
A0A8F0FCR5_9PHAE5.610e-13075.62Ribosomal protein L2 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0FD33_9PHAE2.280e-12975.42Ribosomal protein L2 n=1 Tax=Analipus japonicus Ta... [more]
Q2TUF5_9PHAE2.640e-12873.66Ribosomal protein L2 n=2 Tax=Desmarestia TaxID=313... [more]
A0A8F0K125_9PHAE2.640e-12874.07Ribosomal protein L2 n=1 Tax=Chorda asiatica TaxID... [more]
A0A516ICI0_9PHAE1.070e-12773.06Ribosomal protein L2 n=3 Tax=Lessonia TaxID=105411... [more]
Q8LWZ7_9PHAE1.070e-12776.03Ribosomal protein L2 n=47 Tax=Laminariales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:77608..78597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score227.6
Seed ortholog evalue6.2e-57
Seed eggNOG ortholog315456.RF_0281
Preferred namerplB
KEGG koko:K02886
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
EggNOG OGs1MVTD@1224,2TTKD@28211,47EZ2@766,COG0090@1,COG0090@2
COG Functional cat.J
Best tax levelRickettsiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size990
Cds size738
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.7376769-CDS-D-herbacea_F_contig1028:77607..783451622927436.7376769-CDS-D-herbacea_F_contig1028:77607..78345Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 77608..78345 +
1690790170.1307044-CDS-D-herbacea_F_contig1028:77607..783451690790170.1307044-CDS-D-herbacea_F_contig1028:77607..78345Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 77608..78345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.7529814-UTR-D-herbacea_F_contig1028:78345..785971622927436.7529814-UTR-D-herbacea_F_contig1028:78345..78597Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 78346..78597 +
1690790170.1423671-UTR-D-herbacea_F_contig1028:78345..785971690790170.1423671-UTR-D-herbacea_F_contig1028:78345..78597Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 78346..78597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.379.1prot_D-herbacea_F_contig1028.379.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 77608..78345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.379.1

>prot_D-herbacea_F_contig1028.379.1 ID=prot_D-herbacea_F_contig1028.379.1|Name=mRNA_D-herbacea_F_contig1028.379.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=246bp
MNSKKQKLLTPPLKSQTSNWNKSNGRNNNGHITAWHRGGGHIRLHRNVDL
KRHSTQGIIVGIEYDPNRSGFIARIFNPDTKKHTYIIAPTNAKKGDIIRS
NSTRNGIQNGHSKTLKYIFTGTPIYNLSVVPGKNGKILRAAGSSGQIVKK
TNKLAKIRLKSGQYRWFDIKTMATTGIVSNSNYRFIKLKKAGQSRWLGKR
PIVRGVAMNPIDHPHGGGEGKTSGGRPSVTPWGKPTKGLKTRRSK*
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mRNA from alignment at D-herbacea_F_contig1028:77608..78597+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.379.1 ID=mRNA_D-herbacea_F_contig1028.379.1|Name=mRNA_D-herbacea_F_contig1028.379.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=990bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:77608..78597+ (Desmarestia herbacea DmunF female)
ATGAACTCAAAGAAACAAAAACTTCTGACCCCACCCCTAAAATCACAAAC
ATCTAACTGGAATAAATCTAATGGACGTAACAACAACGGACATATTACTG
CTTGGCATAGAGGAGGAGGGCATATTCGTTTGCACCGTAACGTAGATTTA
AAACGTCACTCAACACAGGGAATAATTGTAGGTATAGAATACGACCCAAA
TCGATCCGGGTTTATAGCAAGAATTTTTAATCCTGACACAAAAAAACATA
CATATATAATAGCACCTACGAACGCGAAAAAGGGTGACATTATTAGATCA
AATTCAACAAGAAATGGGATACAAAATGGACATAGTAAGACCCTTAAATA
TATTTTTACCGGGACTCCAATATACAATCTAAGTGTAGTACCCGGAAAAA
ACGGGAAAATTTTACGTGCTGCGGGTTCTTCTGGCCAAATAGTGAAAAAG
ACTAACAAATTAGCGAAAATACGCCTAAAATCAGGACAATACCGCTGGTT
CGACATAAAAACAATGGCCACTACCGGAATCGTTAGCAACTCTAATTATC
GTTTTATAAAATTAAAAAAAGCTGGGCAATCTCGATGGTTAGGGAAAAGA
CCTATTGTCCGCGGAGTAGCCATGAATCCTATAGACCACCCGCATGGTGG
TGGGGAAGGTAAAACATCGGGAGGGCGCCCTTCGGTTACACCTTGGGGTA
AACCTACAAAAGGTTTAAAAACCCGCCGAAGTAAATAAAATACAACTATG
TCAAGATCTAAATGGAAAACACCTTTTATTGAAAAAAGCCTTTTAAAAAA
TTTAAGCATTAAAAAAACAAAACCTATTTGGTCTAGAAGATCCACTATCT
ATCCAGCAGCCGTAGGATTAAAATTAATAATACATAATGGTAAGGACATG
TTTACTCGTAAAATAAAACCTGAAATGGTGGGACATAAATTGGGAGAGTT
CGTAACAACAAGAAAAAATTTCATACAAAAAAAAAAAAAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:77608..78597+

>mRNA_D-herbacea_F_contig1028.379.1 ID=mRNA_D-herbacea_F_contig1028.379.1|Name=mRNA_D-herbacea_F_contig1028.379.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1476bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:77608..78597+ (Desmarestia herbacea DmunF female)
ATGAACTCAAAGAAACAAAAACTTCTGACCCCACCCCTAAAATCACAAAC
ATCTAACTGGAATAAATCTAATGGACGTAACAACAACGGACATATTACTG
CTTGGCATAGAGGAGGAGGGCATATTCGTTTGCACCGTAACGTAGATTTA
AAACGTCACTCAACACAGGGAATAATTGTAGGTATAGAATACGACCCAAA
TCGATCCGGGTTTATAGCAAGAATTTTTAATCCTGACACAAAAAAACATA
CATATATAATAGCACCTACGAACGCGAAAAAGGGTGACATTATTAGATCA
AATTCAACAAGAAATGGGATACAAAATGGACATAGTAAGACCCTTAAATA
TATTTTTACCGGGACTCCAATATACAATCTAAGTGTAGTACCCGGAAAAA
ACGGGAAAATTTTACGTGCTGCGGGTTCTTCTGGCCAAATAGTGAAAAAG
ACTAACAAATTAGCGAAAATACGCCTAAAATCAGGACAATACCGCTGGTT
CGACATAAAAACAATGGCCACTACCGGAATCGTTAGCAACTCTAATTATC
GTTTTATAAAATTAAAAAAAGCTGGGCAATCTCGATGGTTAGGGAAAAGA
CCTATTGTCCGCGGAGTAGCCATGAATCCTATAGACCACCCGCATGGTGG
TGGGGAAGGTAAAACATCGGGAGGGCGCCCTTCGGTTACACCTTGGGGTA
AACCTACAAAAGGTTTAAAAACCCGCCGAAGTAAATAAATGAACTCAAAG
AAACAAAAACTTCTGACCCCACCCCTAAAATCACAAACATCTAACTGGAA
TAAATCTAATGGACGTAACAACAACGGACATATTACTGCTTGGCATAGAG
GAGGAGGGCATATTCGTTTGCACCGTAACGTAGATTTAAAACGTCACTCA
ACACAGGGAATAATTGTAGGTATAGAATACGACCCAAATCGATCCGGGTT
TATAGCAAGAATTTTTAATCCTGACACAAAAAAACATACATATATAATAG
CACCTACGAACGCGAAAAAGGGTGACATTATTAGATCAAATTCAACAAGA
AATGGGATACAAAATGGACATAGTAAGACCCTTAAATATATTTTTACCGG
GACTCCAATATACAATCTAAGTGTAGTACCCGGAAAAAACGGGAAAATTT
TACGTGCTGCGGGTTCTTCTGGCCAAATAGTGAAAAAGACTAACAAATTA
GCGAAAATACGCCTAAAATCAGGACAATACCGCTGGTTCGACATAAAAAC
AATGGCCACTACCGGAATCGTTAGCAACTCTAATTATCGTTTTATAAAAT
TAAAAAAAGCTGGGCAATCTCGATGGTTAGGGAAAAGACCTATTGTCCGC
GGAGTAGCCATGAATCCTATAGACCACCCGCATGGTGGTGGGGAAGGTAA
AACATCGGGAGGGCGCCCTTCGGTTACACCTTGGGGTAAACCTACAAAAG
GTTTAAAAACCCGCCGAAGTAAATAA
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