mRNA_D-herbacea_F_contig1028.377.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A2R4QQ89_9PHAE (Cytochrome c oxidase subunit 3 n=8 Tax=Fucales TaxID=3009 RepID=A0A2R4QQ89_9PHAE) HSP 1 Score: 499 bits (1284), Expect = 1.010e-177 Identity = 242/255 (94.90%), Postives = 248/255 (97.25%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
P P ++ GLSLTFGGVLYMHNYSGGGQLLILGV+TILYVMFTWWRDIIREALFEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAV+FTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNVVI
Sbjct: 18 PSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGVLTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVVI 272
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A0U1V199_SARFS (Cytochrome c oxidase subunit 3 n=199 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V199_SARFS) HSP 1 Score: 464 bits (1193), Expect = 7.420e-164 Identity = 218/255 (85.49%), Postives = 236/255 (92.55%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
P P ++ GLS TFGGVLYMHNY GGGQLL LG+ITILYVMFTWWRD+IREA FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTW+HHAIV G K+EAL GL +T +FAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +CTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV++
Sbjct: 18 PSPWPFVAALGGLSSTFGGVLYMHNYDGGGQLLCLGLITILYVMFTWWRDVIREASFEGQHTAAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWSHHAIVGGFKREALLGLVITILFAVIFTALQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLCVCTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIV 272
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE) HSP 1 Score: 451 bits (1160), Expect = 7.900e-159 Identity = 214/255 (83.92%), Postives = 230/255 (90.20%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
P P + ++ GL LTFGGVL+MHNY+GGGQLL LGVITILYVMFTWWRDIIREA FEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT FAV FT LQGFEY+ APF+MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY HFSRQRHFGFEAAAWYWHFVDVVWLFLF++IYWWGFNV++
Sbjct: 18 PSPWPLVAALGGLCLTFGGVLFMHNYNGGGQLLSLGVITILYVMFTWWRDIIREAAFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPIGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGVTLAFAVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWGFNVIV 272
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI) HSP 1 Score: 442 bits (1136), Expect = 3.580e-155 Identity = 209/254 (82.28%), Postives = 228/254 (89.76%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVV 812
P P + ++F GLSLTFGGVL+MHNY GGG+LL LGV TILYVMFTWWRDIIREALFEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+ I AISPWGLP +NTI+LLSSGASVTWAHHAIV G KKEA+ GL +T FA+ FT +QGFEY +APFSMSD VYGSVF+MATGFHGFHVIIGTIFL ICT RL+L HFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV+
Sbjct: 18 PSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 271
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI) HSP 1 Score: 435 bits (1119), Expect = 1.390e-152 Identity = 203/255 (79.61%), Postives = 224/255 (87.84%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
P P + ++ GLSLTFGGVL+MHNY GGG+LL LG TILYVMFTWWRD+IREALFEGQHT+AVQQGLRMGMILFIVSE+MFFFAF WAFFTSS++PVFNIGGVWPP+ + AISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEA+ GL+VT FA+ FT +QGFEY APF MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLYL HFS Q HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFN+ +
Sbjct: 18 PSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILYVMFTWWRDVIREALFEGQHTLAVQQGLRMGMILFIVSEIMFFFAFXWAFFTSSISPVFNIGGVWPPTDVVAISPWGLPFLNTILLLSSGASVTWAHHAIVGGLKKEAMQGLSVTLAFAIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNITV 272
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A4Y5T8S8_9PHAE (Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotaceae TaxID=2874 RepID=A0A4Y5T8S8_9PHAE) HSP 1 Score: 411 bits (1057), Expect = 3.320e-143 Identity = 196/250 (78.40%), Postives = 213/250 (85.20%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWG 800
P P + +S LSLTFGGV++MHNYSGGGQLL LGV+TILYVM WWRDIIREA FEG HT +VQ GLR+GMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPPSG++ ISPWGLPLLNT++LLSSGA+VTWAHHAIV G K EA L VT FA+ FT Q EY+ APFS+SDSVYGS FFMATGFHGFHVIIGTIFL IC RLY+DHFSRQ HFGFEAAAWYWHFVDVVWL LFL IYWWG
Sbjct: 18 PSPWPIVASIGALSLTFGGVMFMHNYSGGGQLLSLGVLTILYVMGIWWRDIIREASFEGHHTSSVQDGLRLGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPSGLDVISPWGLPLLNTVLLLSSGATVTWAHHAIVGGLKYEAQSALYVTLTFAIYFTVFQILEYVEAPFSISDSVYGSTFFMATGFHGFHVIIGTIFLSICAVRLYVDHFSRQHHFGFEAAAWYWHFVDVVWLILFLGIYWWG 267
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A5K7TM11_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax=Chorda TaxID=45033 RepID=A0A5K7TM11_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 5.230e-142 Identity = 193/230 (83.91%), Postives = 209/230 (90.87%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAW 740
P P + +S GLSLTFGGVL+MHNY GGG+LL LGVITILYVMFTWWRD+IREALFEGQHT+AVQQGLR+GMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT FA+ FT +QGFEY+SAPF MSD VYGSVF+MATGFHGFHVIIGTIFL +CTFRLYLDHFSRQ HFGFEAAAW
Sbjct: 18 PSPWPLVASLGGLSLTFGGVLFMHNYKGGGELLCLGVITILYVMFTWWRDVIREALFEGQHTLAVQQGLRLGMILFIVSEVMFFFAFFWAFFTSSVSPVFNIGGVWPPTGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLVVTLAFAITFTLIQGFEYMSAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAVCTFRLYLDHFSRQHHFGFEAAAW 247
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A0A7LG50_SACLA (Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A7LG50_SACLA) HSP 1 Score: 406 bits (1043), Expect = 5.180e-141 Identity = 192/260 (73.85%), Postives = 218/260 (83.85%), Query Frame = 3
Query: 36 FSFG*PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
F G P P + ++ GLSLTFGGVL+MHNY GGG+LL LGV TILYVMFTWWRD++RE LFEGQHT++VQQGLRMGMILFIVSE+MFFFAF FFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIVAG KKEAL GL VT FA+ FT +QG EY+ + + + ++ + GFHGFHVIIGT+FL ICT RLY DHFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV+I
Sbjct: 13 FHLGAPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGVFTILYVMFTWWRDVVREGLFEGQHTLSVQQGLRMGMILFIVSEIMFFFAFXXXFFTSSISPVFNIGGVWPPAGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVAGFKKEALQGLGVTLAFAIAFTGMQGVEYMHSFWHVGRGIWFCILHGYRGFHGFHVIIGTLFLAICTLRLYWDHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVII 272
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: D4HLB8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Bifurcaria bifurcata TaxID=74462 RepID=D4HLB8_9PHAE) HSP 1 Score: 398 bits (1022), Expect = 1.890e-138 Identity = 194/229 (84.72%), Postives = 208/229 (90.83%), Query Frame = 3
Query: 51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAA 737
P P ++ GL LTFGGVLYMHNY+GGGQLL LG++TILYVMFTWWRD+IREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GLA+T IFAV+FT LQGFEY+SAPF+MSDSVYGSVFFMATGFHGFHVII TIFL IC+ LYLDHFS Q+H GF+A A
Sbjct: 3 PSPWPFVAALGGLGLTFGGVLYMHNYAGGGQLLSLGLLTILYVMFTWWRDVIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLAITIIFAVIFTGLQGFEYVSAPFAMSDSVYGSVFFMATGFHGFHVIIETIFLSICSLPLYLDHFSPQQHSGFKAPA 231
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU) HSP 1 Score: 394 bits (1011), Expect = 4.880e-137 Identity = 186/214 (86.92%), Postives = 197/214 (92.06%), Query Frame = 3
Query: 174 YVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
YVMFTWWRDIIREA FEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP GIEAISPWGLPLLNTI+LLSSGASVTWAHHAIV G KKEAL GL +T FAV FT +QGFEY++APF MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY HFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGF VV+
Sbjct: 1 YVMFTWWRDIIREASFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPVGIEAISPWGLPLLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGITLAFAVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFGVVV 214 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1028.377.1 >prot_D-herbacea_F_contig1028.377.1 ID=prot_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=234bp MHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGback to top mRNA from alignment at D-herbacea_F_contig1028:75775..76592- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1028.377.1 ID=mRNA_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=818bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:75775..76592- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:75775..76592- >mRNA_D-herbacea_F_contig1028.377.1 ID=mRNA_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1404bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:75775..76592- (Desmarestia herbacea DmunF female)back to top |