mRNA_D-herbacea_F_contig1028.377.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1028.377.1
Unique NamemRNA_D-herbacea_F_contig1028.377.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A2R4QQ89_9PHAE (Cytochrome c oxidase subunit 3 n=8 Tax=Fucales TaxID=3009 RepID=A0A2R4QQ89_9PHAE)

HSP 1 Score: 499 bits (1284), Expect = 1.010e-177
Identity = 242/255 (94.90%), Postives = 248/255 (97.25%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            P P    ++  GLSLTFGGVLYMHNYSGGGQLLILGV+TILYVMFTWWRDIIREALFEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAV+FTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNVVI
Sbjct:   18 PSPWPFVAALGGLSLTFGGVLYMHNYSGGGQLLILGVLTILYVMFTWWRDIIREALFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVVI 272          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A0U1V199_SARFS (Cytochrome c oxidase subunit 3 n=199 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V199_SARFS)

HSP 1 Score: 464 bits (1193), Expect = 7.420e-164
Identity = 218/255 (85.49%), Postives = 236/255 (92.55%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            P P    ++  GLS TFGGVLYMHNY GGGQLL LG+ITILYVMFTWWRD+IREA FEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTW+HHAIV G K+EAL GL +T +FAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +CTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV++
Sbjct:   18 PSPWPFVAALGGLSSTFGGVLYMHNYDGGGQLLCLGLITILYVMFTWWRDVIREASFEGQHTAAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWSHHAIVGGFKREALLGLVITILFAVIFTALQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLCVCTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVIV 272          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 451 bits (1160), Expect = 7.900e-159
Identity = 214/255 (83.92%), Postives = 230/255 (90.20%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            P P  + ++  GL LTFGGVL+MHNY+GGGQLL LGVITILYVMFTWWRDIIREA FEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT  FAV FT LQGFEY+ APF+MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY  HFSRQRHFGFEAAAWYWHFVDVVWLFLF++IYWWGFNV++
Sbjct:   18 PSPWPLVAALGGLCLTFGGVLFMHNYNGGGQLLSLGVITILYVMFTWWRDIIREAAFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPIGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGVTLAFAVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWGFNVIV 272          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 3.580e-155
Identity = 209/254 (82.28%), Postives = 228/254 (89.76%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVV 812
            P P  + ++F GLSLTFGGVL+MHNY GGG+LL LGV TILYVMFTWWRDIIREALFEGQHT AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+ I AISPWGLP +NTI+LLSSGASVTWAHHAIV G KKEA+ GL +T  FA+ FT +QGFEY +APFSMSD VYGSVF+MATGFHGFHVIIGTIFL ICT RL+L HFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV+
Sbjct:   18 PSPWPLVAAFGGLSLTFGGVLFMHNYVGGGELLCLGVFTILYVMFTWWRDIIREALFEGQHTYAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPTDIIAISPWGLPFVNTILLLSSGASVTWAHHAIVGGFKKEAMQGLGITLGFAIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVI 271          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI)

HSP 1 Score: 435 bits (1119), Expect = 1.390e-152
Identity = 203/255 (79.61%), Postives = 224/255 (87.84%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            P P  + ++  GLSLTFGGVL+MHNY GGG+LL LG  TILYVMFTWWRD+IREALFEGQHT+AVQQGLRMGMILFIVSE+MFFFAF WAFFTSS++PVFNIGGVWPP+ + AISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEA+ GL+VT  FA+ FT +QGFEY  APF MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLYL HFS Q HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFN+ +
Sbjct:   18 PSPWPLVAALGGLSLTFGGVLFMHNYEGGGELLCLGFFTILYVMFTWWRDVIREALFEGQHTLAVQQGLRMGMILFIVSEIMFFFAFXWAFFTSSISPVFNIGGVWPPTDVVAISPWGLPFLNTILLLSSGASVTWAHHAIVGGLKKEAMQGLSVTLAFAIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNITV 272          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A4Y5T8S8_9PHAE (Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotaceae TaxID=2874 RepID=A0A4Y5T8S8_9PHAE)

HSP 1 Score: 411 bits (1057), Expect = 3.320e-143
Identity = 196/250 (78.40%), Postives = 213/250 (85.20%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWG 800
            P P  + +S   LSLTFGGV++MHNYSGGGQLL LGV+TILYVM  WWRDIIREA FEG HT +VQ GLR+GMILFIVSEVMFFFAFFWAFFTSSL+PVFNIGGVWPPSG++ ISPWGLPLLNT++LLSSGA+VTWAHHAIV G K EA   L VT  FA+ FT  Q  EY+ APFS+SDSVYGS FFMATGFHGFHVIIGTIFL IC  RLY+DHFSRQ HFGFEAAAWYWHFVDVVWL LFL IYWWG
Sbjct:   18 PSPWPIVASIGALSLTFGGVMFMHNYSGGGQLLSLGVLTILYVMGIWWRDIIREASFEGHHTSSVQDGLRLGMILFIVSEVMFFFAFFWAFFTSSLSPVFNIGGVWPPSGLDVISPWGLPLLNTVLLLSSGATVTWAHHAIVGGLKYEAQSALYVTLTFAIYFTVFQILEYVEAPFSISDSVYGSTFFMATGFHGFHVIIGTIFLSICAVRLYVDHFSRQHHFGFEAAAWYWHFVDVVWLILFLGIYWWG 267          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A5K7TM11_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax=Chorda TaxID=45033 RepID=A0A5K7TM11_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 5.230e-142
Identity = 193/230 (83.91%), Postives = 209/230 (90.87%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAW 740
            P P  + +S  GLSLTFGGVL+MHNY GGG+LL LGVITILYVMFTWWRD+IREALFEGQHT+AVQQGLR+GMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIV G KKEAL GL VT  FA+ FT +QGFEY+SAPF MSD VYGSVF+MATGFHGFHVIIGTIFL +CTFRLYLDHFSRQ HFGFEAAAW
Sbjct:   18 PSPWPLVASLGGLSLTFGGVLFMHNYKGGGELLCLGVITILYVMFTWWRDVIREALFEGQHTLAVQQGLRLGMILFIVSEVMFFFAFFWAFFTSSVSPVFNIGGVWPPTGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVGGFKKEALQGLVVTLAFAITFTLIQGFEYMSAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAVCTFRLYLDHFSRQHHFGFEAAAW 247          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: A0A0A7LG50_SACLA (Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A7LG50_SACLA)

HSP 1 Score: 406 bits (1043), Expect = 5.180e-141
Identity = 192/260 (73.85%), Postives = 218/260 (83.85%), Query Frame = 3
Query:   36 FSFG*PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            F  G P P  + ++  GLSLTFGGVL+MHNY GGG+LL LGV TILYVMFTWWRD++RE LFEGQHT++VQQGLRMGMILFIVSE+MFFFAF   FFTSS++PVFNIGGVWPP+GIEAISPWGLP LNTI+LLSSGASVTWAHHAIVAG KKEAL GL VT  FA+ FT +QG EY+ + + +   ++  +     GFHGFHVIIGT+FL ICT RLY DHFSRQ HFGFEAAAWYWHFVDVVWLFLFL+IYWWGFNV+I
Sbjct:   13 FHLGAPSPWPLVAALGGLSLTFGGVLFMHNYKGGGELLCLGVFTILYVMFTWWRDVVREGLFEGQHTLSVQQGLRMGMILFIVSEIMFFFAFXXXFFTSSISPVFNIGGVWPPAGIEAISPWGLPFLNTILLLSSGASVTWAHHAIVAGFKKEALQGLGVTLAFAIAFTGMQGVEYMHSFWHVGRGIWFCILHGYRGFHGFHVIIGTLFLAICTLRLYWDHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFNVII 272          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: D4HLB8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Bifurcaria bifurcata TaxID=74462 RepID=D4HLB8_9PHAE)

HSP 1 Score: 398 bits (1022), Expect = 1.890e-138
Identity = 194/229 (84.72%), Postives = 208/229 (90.83%), Query Frame = 3
Query:   51 PKPLAVCSSFRGLSLTFGGVLYMHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAA 737
            P P    ++  GL LTFGGVLYMHNY+GGGQLL LG++TILYVMFTWWRD+IREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GLA+T IFAV+FT LQGFEY+SAPF+MSDSVYGSVFFMATGFHGFHVII TIFL IC+  LYLDHFS Q+H GF+A A
Sbjct:    3 PSPWPFVAALGGLGLTFGGVLYMHNYAGGGQLLSLGLLTILYVMFTWWRDVIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLAITIIFAVIFTGLQGFEYVSAPFAMSDSVYGSVFFMATGFHGFHVIIETIFLSICSLPLYLDHFSPQQHSGFKAPA 231          
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU)

HSP 1 Score: 394 bits (1011), Expect = 4.880e-137
Identity = 186/214 (86.92%), Postives = 197/214 (92.06%), Query Frame = 3
Query:  174 YVMFTWWRDIIREALFEGQHTVAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRHFGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI 815
            YVMFTWWRDIIREA FEGQHT+AVQQGLRMGMILFIVSEVMFFFAFFWAFFTSS++PVFNIGGVWPP GIEAISPWGLPLLNTI+LLSSGASVTWAHHAIV G KKEAL GL +T  FAV FT +QGFEY++APF MSD VYGSVF+MATGFHGFHVIIGTIFL ICT RLY  HFSRQRHFGFEAAAWYWHFVDVVWLFLFL+IYWWGF VV+
Sbjct:    1 YVMFTWWRDIIREASFEGQHTLAVQQGLRMGMILFIVSEVMFFFAFFWAFFTSSISPVFNIGGVWPPVGIEAISPWGLPLLNTILLLSSGASVTWAHHAIVGGFKKEALQGLGITLAFAVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWGFGVVV 214          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1028.377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ89_9PHAE1.010e-17794.90Cytochrome c oxidase subunit 3 n=8 Tax=Fucales Tax... [more]
A0A0U1V199_SARFS7.420e-16485.49Cytochrome c oxidase subunit 3 n=199 Tax=Sargassac... [more]
Q2TUF2_9PHAE7.900e-15983.92Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce... [more]
E6ZES3_ECTSI3.580e-15582.28Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
COX3_PYLLI1.390e-15279.61Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyc... [more]
A0A4Y5T8S8_9PHAE3.320e-14378.40Cytochrome c oxidase subunit 3 n=57 Tax=Dictyotace... [more]
A0A5K7TM11_9PHAE5.230e-14283.91Cytochrome c oxidase subunit 3 (Fragment) n=15 Tax... [more]
A0A0A7LG50_SACLA5.180e-14173.85Cytochrome c oxidase subunit 3 n=1 Tax=Saccharina ... [more]
D4HLB8_9PHAE1.890e-13884.72Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
G1UD76_CUTMU4.880e-13786.92Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1028contigD-herbacea_F_contig1028:75775..76592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score326.6
Seed ortholog evalue9.3e-87
Seed eggNOG ortholog3702.AT2G07687.1
Preferred namecox3
KEGG koko:K02262
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.cytochrome c oxidase subunit 3
EggNOG OGs37QER@33090,3G8C5@35493,3HY38@3699,COG1845@1,KOG4664@2759
COG Functional cat.C
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons1
Model size818
Cds size702
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.611805-CDS-D-herbacea_F_contig1028:75774..764761622927436.611805-CDS-D-herbacea_F_contig1028:75774..76476Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 75775..76476 -
1690790170.0693514-CDS-D-herbacea_F_contig1028:75774..764761690790170.0693514-CDS-D-herbacea_F_contig1028:75774..76476Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1028 75775..76476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.6359425-UTR-D-herbacea_F_contig1028:76476..765921622927436.6359425-UTR-D-herbacea_F_contig1028:76476..76592Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 76477..76592 -
1690790170.0875134-UTR-D-herbacea_F_contig1028:76476..765921690790170.0875134-UTR-D-herbacea_F_contig1028:76476..76592Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1028 76477..76592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1028.377.1prot_D-herbacea_F_contig1028.377.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1028 75775..76476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1028.377.1

>prot_D-herbacea_F_contig1028.377.1 ID=prot_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=234bp
MHNYSGGGQLLILGVITILYVMFTWWRDIIREALFEGQHTVAVQQGLRMG
MILFIVSEVMFFFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLL
NTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYI
SAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLDHFSRQRH
FGFEAAAWYWHFVDVVWLFLFLSIYWWGFNVVI*
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mRNA from alignment at D-herbacea_F_contig1028:75775..76592-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1028.377.1 ID=mRNA_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=818bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:75775..76592- (Desmarestia herbacea DmunF female)
ATGAAATCTCAATCTAAATTGATTCAACGACATCCTTTTCATTTGGTTGA CCCAAGCCCTTGGCCGTTTGTAGCAGCTTTAGGGGTTTAAGTTTGACCTT TGGTGGAGTATTGTATATGCATAATTATAGTGGGGGTGGTCAGCTGTTAA TTTTAGGAGTAATAACTATTTTATACGTGATGTTTACTTGGTGGAGAGAC ATTATCCGTGAGGCTTTGTTTGAGGGTCAGCATACCGTTGCCGTACAGCA GGGGTTGCGCATGGGTATGATTCTTTTTATTGTCTCCGAGGTTATGTTTT TTTTTGCGTTTTTTTGGGCATTTTTTACTTCTTCCCTAGCTCCAGTATTT AATATAGGAGGTGTTTGGCCCCCTTCTGGTATTGAAGCAATAAGTCCATG GGGATTGCCGCTTTTAAACACTATTATTTTACTATCTTCTGGAGCTAGTG TTACATGGGCTCATCATGCAATTGTTGCAGGTTCTAAAAAGGAGGCCTTG TATGGTTTAGCGGTCACTACAATATTTGCAGTTGTTTTTACGTGCTTGCA AGGTTTTGAATATATTAGTGCTCCTTTCTCGATGTCCGATAGCGTTTACG GTTCAGTCTTTTTTATGGCTACAGGCTTTCATGGTTTTCATGTAATTATT GGTACTATATTTTTAGTTATATGTACTTTTCGCTTATATTTGGATCATTT TAGTCGCCAACGGCATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCATT TTGTCGATGTTGTTTGGTTATTTTTATTTTTAAGTATATATTGGTGGGGT TTTAATGTTGTAATTTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:75775..76592-

>mRNA_D-herbacea_F_contig1028.377.1 ID=mRNA_D-herbacea_F_contig1028.377.1|Name=mRNA_D-herbacea_F_contig1028.377.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1404bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:75775..76592- (Desmarestia herbacea DmunF female)
ATGCATAATTATAGTGGGGGTGGTCAGCTGTTAATTTTAGGAGTAATAAC
TATTTTATACGTGATGTTTACTTGGTGGAGAGACATTATCCGTGAGGCTT
TGTTTGAGGGTCAGCATACCGTTGCCGTACAGCAGGGGTTGCGCATGGGT
ATGATTCTTTTTATTGTCTCCGAGGTTATGTTTTTTTTTGCGTTTTTTTG
GGCATTTTTTACTTCTTCCCTAGCTCCAGTATTTAATATAGGAGGTGTTT
GGCCCCCTTCTGGTATTGAAGCAATAAGTCCATGGGGATTGCCGCTTTTA
AACACTATTATTTTACTATCTTCTGGAGCTAGTGTTACATGGGCTCATCA
TGCAATTGTTGCAGGTTCTAAAAAGGAGGCCTTGTATGGTTTAGCGGTCA
CTACAATATTTGCAGTTGTTTTTACGTGCTTGCAAGGTTTTGAATATATT
AGTGCTCCTTTCTCGATGTCCGATAGCGTTTACGGTTCAGTCTTTTTTAT
GGCTACAGGCTTTCATGGTTTTCATGTAATTATTGGTACTATATTTTTAG
TTATATGTACTTTTCGCTTATATTTGGATCATTTTAGTCGCCAACGGCAT
TTTGGATTTGAAGCTGCTGCTTGGTATTGGCATTTTGTCGATGTTGTTTG
GTTATTTTTATTTTTAAGTATATATTGGTGGGGTTTTAATGTTGTAATTT
AAATGCATAATTATAGTGGGGGTGGTCAGCTGTTAATTTTAGGAGTAATA
ACTATTTTATACGTGATGTTTACTTGGTGGAGAGACATTATCCGTGAGGC
TTTGTTTGAGGGTCAGCATACCGTTGCCGTACAGCAGGGGTTGCGCATGG
GTATGATTCTTTTTATTGTCTCCGAGGTTATGTTTTTTTTTGCGTTTTTT
TGGGCATTTTTTACTTCTTCCCTAGCTCCAGTATTTAATATAGGAGGTGT
TTGGCCCCCTTCTGGTATTGAAGCAATAAGTCCATGGGGATTGCCGCTTT
TAAACACTATTATTTTACTATCTTCTGGAGCTAGTGTTACATGGGCTCAT
CATGCAATTGTTGCAGGTTCTAAAAAGGAGGCCTTGTATGGTTTAGCGGT
CACTACAATATTTGCAGTTGTTTTTACGTGCTTGCAAGGTTTTGAATATA
TTAGTGCTCCTTTCTCGATGTCCGATAGCGTTTACGGTTCAGTCTTTTTT
ATGGCTACAGGCTTTCATGGTTTTCATGTAATTATTGGTACTATATTTTT
AGTTATATGTACTTTTCGCTTATATTTGGATCATTTTAGTCGCCAACGGC
ATTTTGGATTTGAAGCTGCTGCTTGGTATTGGCATTTTGTCGATGTTGTT
TGGTTATTTTTATTTTTAAGTATATATTGGTGGGGTTTTAATGTTGTAAT
TTAA
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