mRNA_D-herbacea_F_contig1028.375.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-herbacea_F_contig1028.375.1
Unique Name	mRNA_D-herbacea_F_contig1028.375.1
Type	mRNA
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)

Homology

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A343C631_FUCDI (ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 RepID=A0A343C631_FUCDI)

HSP 1 Score: 201 bits (511), Expect = 1.380e-61
Identity = 132/219 (60.27%), Postives = 144/219 (65.75%), Query Frame = 1

Query:    1 FFSPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILI-----WISYAKFVSSGWD---FLSFSIFIGTY-----------RNSFVHI*TS*FSGSSFC*YDGGSY-FA*SNCRVRV---------------GYD----GKWGLLLLAHIVPLVVLVILF 540
            FFSPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILI      + Y+  ++S       L+ S+FIG              + F+   TS          +  SY F   +  VR+               G+     G  GLLLLAHIVPLVVLVILF
Sbjct:    2 FFSPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITSHLIQTMVLALSVFIGVVIICASTHGFHMLSLFLPGGTSLTLAFLLVPIEIVSYVFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLLAHIVPLVVLVILF 220

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: E6ZES4_ECTSI (ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES4_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.680e-49
Identity = 96/113 (84.96%), Postives = 101/113 (89.38%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTS+ LAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGG     H++ L +  +  FGLELAVALIQAYVFTILSCIYINDAIVLH
Sbjct:  138 GFHMLSLFLPGGTSIVLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLVAHVVPLGVL-VILFGLELAVALIQAYVFTILSCIYINDAIVLH 249

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A0U1WNN5_SARFS (ATP synthase subunit a n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN5_SARFS)

HSP 1 Score: 169 bits (428), Expect = 4.680e-49
Identity = 97/113 (85.84%), Postives = 100/113 (88.50%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTSL LAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGG     H++ L L  +  FGLELAVALIQAYVFTILSCIYINDAI LH
Sbjct:  138 GFHMLSLFLPGGTSLPLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLIAHVVPL-LVLIILFGLELAVALIQAYVFTILSCIYINDAIALH 249

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A089MYN0_PETFA (ATP synthase subunit a n=18 Tax=Ectocarpales TaxID=2877 RepID=A0A089MYN0_PETFA)

HSP 1 Score: 168 bits (426), Expect = 9.350e-49
Identity = 96/113 (84.96%), Postives = 100/113 (88.50%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTS+ LAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGG     HI+ L +  +  FGLELAVALIQAYVFTILSCIYINDAI LH
Sbjct:  138 GFHMLSLFLPGGTSMVLAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLLAHIVPLGVL-IILFGLELAVALIQAYVFTILSCIYINDAIALH 249

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A1I9LW45_9PHAE (ATP synthase subunit a n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW45_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.870e-48
Identity = 95/113 (84.07%), Postives = 100/113 (88.50%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTS+ LAFLL+PIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAW MMGSGG     HI+ L +  +  FGLELAVALIQAYVFTILSCIYINDAIVLH
Sbjct:  138 GFHMLSLFLPGGTSIILAFLLIPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWTMMGSGGLLLVAHIIPLGVL-VILFGLELAVALIQAYVFTILSCIYINDAIVLH 249

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: ATP6_PYLLI (ATP synthase subunit a n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=ATP6_PYLLI)

HSP 1 Score: 164 bits (415), Expect = 4.120e-47
Identity = 94/113 (83.19%), Postives = 99/113 (87.61%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTS+ LAFLLVPIEIVSY+FKPLSLAVRLFANMMAGHTLLKVIA  AWAMMGSGG     HI+ L +  +  FGLELAVALIQAYVFTILSCIYINDAIVLH
Sbjct:  137 GFHMLSLFLPGGTSIVLAFLLVPIEIVSYVFKPLSLAVRLFANMMAGHTLLKVIAAVAWAMMGSGGLLLIAHIVPLGVL-VILFGLELAVALIQAYVFTILSCIYINDAIVLH 248

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: Q2TUB2_DICDH (ATP synthase subunit a n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB2_DICDH)

HSP 1 Score: 164 bits (415), Expect = 4.360e-47
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTSL LAFLLVPIE++SYIFKP+SLAVRLFANMMAGHTLLKVI GFAWAM+GSGG      L   L  +  FGLELAV+LIQAYVFTILSCIYINDA+VLH
Sbjct:  139 GFHMLSLFLPGGTSLGLAFLLVPIEVISYIFKPVSLAVRLFANMMAGHTLLKVIVGFAWAMVGSGGLLLIVHLVPLLVLVVLFGLELAVSLIQAYVFTILSCIYINDALVLH 250

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A8F0FD27_9PHAE (ATP synthase subunit a n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD27_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 8.470e-47
Identity = 92/113 (81.42%), Postives = 99/113 (87.61%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHM+SLFLPGGTSL LAFLLVPIEIVSY+FKP+SLAVRLFANMMAGHTLLKVIAGFAWAMMGSGG     H+L L +  +  FGLEL VA IQAYVFTILSCIYINDA+VLH
Sbjct:  138 GFHMVSLFLPGGTSLPLAFLLVPIEIVSYVFKPISLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGLLLIAHMLPLVVL-VILFGLELGVAFIQAYVFTILSCIYINDALVLH 249

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: A0A4Y5T8Z6_9PHAE (ATP synthase subunit a n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Z6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.920e-46
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 2

Query:  293 GFHMLSLFLPGGTSLALAFLLVPIEIVSYIFKPLSLAVRLFANMMAGHTLLKVIAGFAWAMMGSGGYCC*-HILYLWLFWLFFFGLELAVALIQAYVFTILSCIYINDAIVLH 628
            GFHMLSLFLPGGTSL LAFLLVPIEI+SY+FKP+SLAVRLFANMMAGHTLLKVI GFAW+M+GSGG     HI+ L +  +  FGLELAV+LIQAYVFTILSCIYINDA+VLH
Sbjct:  139 GFHMLSLFLPGGTSLGLAFLLVPIEIISYVFKPVSLAVRLFANMMAGHTLLKVIVGFAWSMIGSGGLLLIVHIVPLAVL-VVLFGLELAVSLIQAYVFTILSCIYINDALVLH 250

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BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Match: D2YYC2_SCYLO (F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=D2YYC2_SCYLO)

HSP 1 Score: 150 bits (378), Expect = 3.180e-43
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 1

Query:    7 SPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILI 291
            SPLEQFQILP  SFG+ LFD SITNAM+TT +GL FFLF+ YCL  Y  +CFP RWQL++E LY++TAGLIWDS+GP GQKYFPF+F+IFSFILI
Sbjct:    4 SPLEQFQILPLLSFGVNLFDLSITNAMLTTCIGLAFFLFIFYCLLSYKLNCFPTRWQLVLESLYISTAGLIWDSVGPKGQKYFPFLFVIFSFILI 98

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig1028.375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A343C631_FUCDI	1.380e-61	60.27	ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 Re...	[more]
E6ZES4_ECTSI	4.680e-49	84.96	ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID...	[more]
A0A0U1WNN5_SARFS	4.680e-49	85.84	ATP synthase subunit a n=24 Tax=Sargassaceae TaxID...	[more]
A0A089MYN0_PETFA	9.350e-49	84.96	ATP synthase subunit a n=18 Tax=Ectocarpales TaxID...	[more]
A0A1I9LW45_9PHAE	1.870e-48	84.07	ATP synthase subunit a n=1 Tax=Pleurocladia lacust...	[more]
ATP6_PYLLI	4.120e-47	83.19	ATP synthase subunit a n=2 Tax=Pylaiella littorali...	[more]
Q2TUB2_DICDH	4.360e-47	80.36	ATP synthase subunit a n=1 Tax=Dictyota dichotoma ...	[more]
A0A8F0FD27_9PHAE	8.470e-47	81.42	ATP synthase subunit a n=1 Tax=Analipus japonicus ...	[more]
A0A4Y5T8Z6_9PHAE	4.920e-46	79.65	ATP synthase subunit a n=1 Tax=Dictyopteris divari...	[more]
D2YYC2_SCYLO	3.180e-43	72.63	F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig1028	contig	D-herbacea_F_contig1028:73838..74465 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-19
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	628
Cds size	303
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig1028.375.1	prot_D-herbacea_F_contig1028.375.1	Desmarestia herbacea DmunF female	polypeptide	D-herbacea_F_contig1028 74079..74381 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927436.474605-UTR-D-herbacea_F_contig1028:73837..74078	1622927436.474605-UTR-D-herbacea_F_contig1028:73837..74078	Desmarestia herbacea DmunF female	UTR	D-herbacea_F_contig1028 73838..74078 -
1690790170.0093863-UTR-D-herbacea_F_contig1028:73837..74078	1690790170.0093863-UTR-D-herbacea_F_contig1028:73837..74078	Desmarestia herbacea DmunF female	UTR	D-herbacea_F_contig1028 73838..74078 -
1622927436.5027564-UTR-D-herbacea_F_contig1028:74381..74465	1622927436.5027564-UTR-D-herbacea_F_contig1028:74381..74465	Desmarestia herbacea DmunF female	UTR	D-herbacea_F_contig1028 74382..74465 -
1690790170.0320735-UTR-D-herbacea_F_contig1028:74381..74465	1690790170.0320735-UTR-D-herbacea_F_contig1028:74381..74465	Desmarestia herbacea DmunF female	UTR	D-herbacea_F_contig1028 74382..74465 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927436.4857423-CDS-D-herbacea_F_contig1028:74078..74381	1622927436.4857423-CDS-D-herbacea_F_contig1028:74078..74381	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig1028 74079..74381 -
1690790170.0194604-CDS-D-herbacea_F_contig1028:74078..74381	1690790170.0194604-CDS-D-herbacea_F_contig1028:74078..74381	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig1028 74079..74381 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-herbacea_F_contig1028:73838..74465-
coding sequence from alignment at D-herbacea_F_contig1028:73838..74465-

protein sequence of mRNA_D-herbacea_F_contig1028.375.1

>prot_D-herbacea_F_contig1028.375.1 ID=prot_D-herbacea_F_contig1028.375.1|Name=mRNA_D-herbacea_F_contig1028.375.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=101bp
MITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIG
PAGQKYFPFIFMIFSFILIWISYAKFVSSGWDFLSFSIFIGTYRNSFVHI
*

mRNA from alignment at D-herbacea_F_contig1028:73838..74465-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-herbacea_F_contig1028.375.1 ID=mRNA_D-herbacea_F_contig1028.375.1|Name=mRNA_D-herbacea_F_contig1028.375.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=628bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:73838..74465- (Desmarestia herbacea DmunF female)
TTTTTTAGTCCCTTAGAACAATTTCAAATACTTCCATTTTTTAGTTTTGG
TATCGCTTTATTTGATTTTTCGATAACCAACGCAATGATTACAACTTTTC
TTGGTTTAGGGTTTTTCTTGTTTGTCCATTATTGTCTTTCAGTTTATAGT
TTTAGTTGTTTTCCTAACCGTTGGCAATTGCTTATTGAAGGACTCTATTT
AACTACGGCAGGTCTAATTTGGGACAGTATTGGTCCAGCGGGTCAAAAAT
ATTTCCCATTCATTTTTATGATCTTTAGTTTTATTTTGATTTGGATTTCA
TATGCTAAGTTTGTTTCTTCCGGGTGGGACTTCCTTAGCTTTAGCATTTT
TATTGGTACCTATAGAAATAGTTTCGTACATATTTAAACCTCTTAGTTTA
GCGGTTCGTCTTTTTGCTAATATGATGGCGGGTCATACTTTGCTTAAAGT
AATTGCAGGGTTCGCGTGGGCTATGATGGGAAGTGGGGGTTACTGTTGTT
AGCACATATTGTACCTTTGGTTGTTTTGGTTATTCTTTTTTGGTCTTGAA
TTAGCAGTCGCTTTGATTCAAGCTTATGTTTTTACAATTTTAAGTTGCAT
TTACATAAACGACGCAATAGTTCTTCAT

Coding sequence (CDS) from alignment at D-herbacea_F_contig1028:73838..74465-

>mRNA_D-herbacea_F_contig1028.375.1 ID=mRNA_D-herbacea_F_contig1028.375.1|Name=mRNA_D-herbacea_F_contig1028.375.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_F_contig1028:73838..74465- (Desmarestia herbacea DmunF female)
ATGATTACAACTTTTCTTGGTTTAGGGTTTTTCTTGTTTGTCCATTATTG
TCTTTCAGTTTATAGTTTTAGTTGTTTTCCTAACCGTTGGCAATTGCTTA
TTGAAGGACTCTATTTAACTACGGCAGGTCTAATTTGGGACAGTATTGGT
CCAGCGGGTCAAAAATATTTCCCATTCATTTTTATGATCTTTAGTTTTAT
TTTGATTTGGATTTCATATGCTAAGTTTGTTTCTTCCGGGTGGGACTTCC
TTAGCTTTAGCATTTTTATTGGTACCTATAGAAATAGTTTCGTACATATT
TAAATGATTACAACTTTTCTTGGTTTAGGGTTTTTCTTGTTTGTCCATTA
TTGTCTTTCAGTTTATAGTTTTAGTTGTTTTCCTAACCGTTGGCAATTGC
TTATTGAAGGACTCTATTTAACTACGGCAGGTCTAATTTGGGACAGTATT
GGTCCAGCGGGTCAAAAATATTTCCCATTCATTTTTATGATCTTTAGTTT
TATTTTGATTTGGATTTCATATGCTAAGTTTGTTTCTTCCGGGTGGGACT
TCCTTAGCTTTAGCATTTTTATTGGTACCTATAGAAATAGTTTCGTACAT
ATTTAA