mRNA_D-herbacea_F_contig1020.372.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1020.372.1
Unique NamemRNA_D-herbacea_F_contig1020.372.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 4.090e-100
Identity = 155/300 (51.67%), Postives = 207/300 (69.00%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLE----------DQAEASKY----GELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            LQKCGG+TVK +L + +GS++ I+DS QWK GD  + NFG  LA G  WN++AGGY EALRR++ V+  CR+FT+FRHP++R+VSA+FYCRS  GD  CA   +D + +DL+TFAKHWGNFA+RQFAL  VP+D V +++ +   + +    +K   GWY  K+YLE           Q+EA           +A LYD+L  A DL+R  Y AVGILE++NTTL LFD ALEIPGM W A+F  GGK+R VD  +   E++TL +AWT+S++K++M LDL LYEHAV VFH+Q + Y L
Sbjct:  162 LQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQR-VDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 4.430e-91
Identity = 148/295 (50.17%), Postives = 196/295 (66.44%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLED-----QAEASKYGE----LPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            LQKCGG+TVK +L  +WGS+F I+DS +WK GD F+  FG  LA G++WN++ GGY EALR ++ V   CR+FT+FRHP++R+VSA+FYCRS  GD  CA   +  + +DL+TFAKHWGNFALRQFAL  VP+D            DVQ + +K     YL +   ED     Q EA    +     PDA LY++L  A DL+RD Y AVGILE++NTTL LFD  L++P M+W+ +F   GK   VD  +   E +TL +AWT+S++K++M LDL LYEHAV VFHQQ + + L
Sbjct:  183 LQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSD------------DVQEYQLKM----YLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHH-VDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 5.220e-86
Identity = 141/294 (47.96%), Postives = 189/294 (64.29%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENN-----CRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTG---RDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            LQK GGTTVK++L   WGS+   +DS QWK+G  + ++    LA+   W+  AGGY EALRRT   + +     CRWFT+FRHPVSRLVSA++YCR    DQLCA   +  R++DLVTFA+HWGNFALRQFAL  V  D V D LVS  G     + A  ++  PGWY+ KL+L D++  +         L  M     DLLRD+YA VGILE++N TLSLFD+AL++PGM W+ EF+  GK  +VD     E+ D L +A ++ +I + + LDL+LY  AV +F+QQ+  Y +
Sbjct:   94 LQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKL-NVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.970e-60
Identity = 123/307 (40.07%), Postives = 174/307 (56.68%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKI----FDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVE-NNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRS--MDLVTFAKHWGNFALRQFALSIVPADAVIDHLVS--KTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGE------------LPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            + K GG+TVK +LA  W     +    +DSPQW EG  F ++F      G+E +++ G Y E LR    +    C+WFT+FRHP+ RLVSA+FYC+    D LCA   +D  +   DL  FA+HWG+F LRQFAL+ V  + ++ + V    TG     H  ++ PGWY  KLYL+ Q +  + GE               A +  +L   Q+LL + YAAVG+LE++ T+L LF+ AL +PG DW   F   GKK S D     EEA+ L  +WT+  ++R++ LDL LY++AV V +QQ   Y L
Sbjct:    1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDF-----LGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNS-DGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.840e-57
Identity = 111/286 (38.81%), Postives = 160/286 (55.94%), Query Frame = 1
Query:    1 LQKCGGTTVKKI----LAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVI-DHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGEL-PDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQ 840
            + K GG TV+K+    L +K G    +FD  +W  G ++ + F K  A         GGY E LR     + +C+WFT+FRHPVSR+VSA+FYC+    DQLCA   +D   +DL+TFA+HWGN+ LRQFAL+ + A+ V  + +VS+  +  + H     P WY  K YL    +    G   P++ L   L  AQ+ L   YAAVGI+EE++ ++ LF+  L +   DW  EFQ  GKK S  +         L  AW + ++K+F+ LD+ LY+HA+ V   Q
Sbjct:   58 MNKSGGMTVRKMIMPFLTEK-GVSTALFDDIEWSSGRSYAETFVKENAV-----FTYGGYTEGLRMYD--DRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQ 335          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.770e-45
Identity = 106/297 (35.69%), Postives = 153/297 (51.52%), Query Frame = 1
Query:    7 KCGGTTVKKIL---AQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQ----------AEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            K GGTTVK  L   A+       +  S  +  GD   K    +L   ++  +IAGGY E LR +      C+WFTM RHP++RL+SAF+YC     DQLCA         D+  FAKHWGN+AL QFAL +V    +          +V A      P W+ +KLY E +             + + E     + D+L   ++LLR +YAAVGILE +  ++ LFD ALEIPG +W         ++S +   + E+   LA A T+  +++++ LDL LYE+A  +  +Q + YDL
Sbjct:   45 KAGGTTVKTHLRNYAESRNETVALCHSDWYARGD---KGIQDLL--NDKPVLIAGGYAEGLRTSAF--QGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIF-------AEEVDA------PAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNK--IVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.090e-45
Identity = 103/290 (35.52%), Postives = 151/290 (52.07%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSV---DAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDLE 861
            + K G +  +++  ++W     +FD+ QW+ GD F  +   ++A+   W ++ GG  E+LR  K  E +C+W T+FRHP++RL+SA+ +C     D +C   E    S  LV FA+ WGNFA+RQFAL  V   AV +    +  R         T  WYL K YL      ++ G   D  L  ML   + LL   YAAVGI +E  TT+ LF  AL + G+DW + +   G    V      D+AE ++   +A  N  I   + LD+ LYEHA+HVF  Q   + +E
Sbjct:  279 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD---VMAS--HWKLLHGGCVESLRNHK--ERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTE----STGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQART-------GTSMWYLVKEYL------ARGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAE-SEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.790e-45
Identity = 99/289 (34.26%), Postives = 149/289 (51.56%), Query Frame = 1
Query:    1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGG--KKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDLE 861
            + K G +  +++  ++W     +FD+ QW+ GD F  +   ++A+   W ++ GG  E+LR  K    +C+W T+FRHP++RL+SA+ +C     D +C   E    S  L  FA+ WGNFA+RQFAL+ V   AV +    +  R         T  WYL K YL      ++ G   D  L   L   + LL   YAAVGI +E  TT+ LF  AL + G+DW + +   G  ++   D+     E++   +A  N  I   + LD+ LYEHAVHVF  Q   + +E
Sbjct:    1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAAD---VMAS--RWKLLHGGCVESLRNHK--GRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTE----STGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQART-------GTSMWYLVKEYL------ARGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.270e-38
Identity = 81/212 (38.21%), Postives = 127/212 (59.91%), Query Frame = 1
Query:  226 FRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKY-------GELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQ 840
            ++ P+ RLVSA+FYC+ +  D+LCA   +   + DL TFAKHWGN+ LRQF+L+ V A+   D   ++  R +    +   PGWY  K Y E+Q +  +        G   D A+  +L   +DLL  +Y+AVGILE++ T+++LF+ AL++P  +WQ   ++ G+K +VD     EEA  L  AW +  + + + LD+ LY+HAV V ++Q
Sbjct:   18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAE---DVFAAEQERGIDGRPVMF-PGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRK-NVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQ 224          
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.800e-37
Identity = 102/299 (34.11%), Postives = 151/299 (50.50%), Query Frame = 1
Query:    1 LQKCGGTTVKKIL---AQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQ----------AEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
            + K GGT++++++   A    +    F   Q+  GD   +   +IL      ++I G Y E LR    V   C+WFTM RHP++RLVSAF YC     DQLCA R       D+  FA+HWGN  + QFAL+    + + D LV++            +P WY +KLY E +          A  S      +  + ++L   ++LLR  YAAVGILE++ T++ LFD AL++PG +W +        R+V   D   + D L  + T+  +K+ + LD+ LYEHA  V   Q   Y L
Sbjct:   43 MNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGD---RGVQQIL--DRRPSLIWGAYTEGLRPYATVLG-CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAF---EDLNDILVTEV----------KSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTST-SASSTPRNVH--DSKAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FWQ3_ECTSI4.090e-10051.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI4.430e-9150.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G715_ECTSI5.220e-8647.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FS84_ECTSI1.970e-6040.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY77_9PHAE2.840e-5738.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE2.770e-4535.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM0_9PHAE3.090e-4535.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI4.790e-4534.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L061_9PHAE5.270e-3838.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE1.800e-3734.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1020contigD-herbacea_F_contig1020:6358..7221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue6.5e-82
Seed eggNOG ortholog2880.D7FWQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size864
Cds size864
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927436.1832333-CDS-D-herbacea_F_contig1020:6357..72211622927436.1832333-CDS-D-herbacea_F_contig1020:6357..7221Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1020 6358..7221 -
1690790169.8492045-CDS-D-herbacea_F_contig1020:6357..72211690790169.8492045-CDS-D-herbacea_F_contig1020:6357..7221Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1020 6358..7221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1020.372.1prot_D-herbacea_F_contig1020.372.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1020 6358..7221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1020.372.1

>prot_D-herbacea_F_contig1020.372.1 ID=prot_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=288bp
LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWN
IIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCA
RREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQA
HYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAA
VGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTL
AEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDLE*
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mRNA from alignment at D-herbacea_F_contig1020:6358..7221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1020.372.1 ID=mRNA_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=864bp|location=Sequence derived from alignment at D-herbacea_F_contig1020:6358..7221- (Desmarestia herbacea DmunF female)
CTCCAGAAATGCGGAGGAACAACCGTGAAAAAAATATTAGCCCAAAAGTG GGGTTCAAAGTTCAAAATTTTCGACTCGCCCCAATGGAAAGAAGGAGACG CCTTCACAAAGAACTTCGGTAAGATCCTTGCTACCGGAAACGAGTGGAAT ATCATAGCAGGGGGCTACCCGGAAGCTCTCAGACGTACCAAGGTCGTGGA GAACAACTGCAGATGGTTTACCATGTTTCGGCACCCGGTATCGCGTCTGG TTTCTGCTTTTTTCTACTGTCGGAGTCACCAGGGGGACCAGTTGTGCGCA CGTAGAGAAATCGATGTGCGAAGCATGGACCTTGTAACGTTTGCAAAGCA CTGGGGCAATTTTGCGCTGCGACAATTCGCGCTCAGCATAGTACCCGCGG ACGCTGTAATAGACCACTTGGTCTCGAAAACTGGGCGAGACGTCCAGGCG CATTACATCAAGGCAACTCCGGGATGGTATCTGTCAAAACTGTACCTTGA AGACCAAGCGGAGGCGTCGAAATACGGCGAACTTCCGGATGCGGCCTTGT ACGACATGCTCCCTCTCGCGCAGGACTTGCTTCGGGACAGCTACGCTGCC GTGGGTATCCTCGAGGAGTTCAACACCACTTTATCCTTGTTTGACGCGGC TCTCGAGATTCCTGGGATGGATTGGCAGGCGGAATTCCAGCATGGCGGAA AGAAGAGAAGCGTGGATGCGGCGGACGTGGCTGAGGAAGCTGATACTCTA GCGGAAGCCTGGACCAACTCCGACATCAAGAGGTTCATGCACCTCGACCT GCAACTGTATGAGCACGCTGTACATGTTTTCCACCAACAAAAAAAGCTGT ATGATCTCGAGTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1020:6358..7221-

>mRNA_D-herbacea_F_contig1020.372.1 ID=mRNA_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1728bp|location=Sequence derived from alignment at D-herbacea_F_contig1020:6358..7221- (Desmarestia herbacea DmunF female)
CTCCAGAAATGCGGAGGAACAACCGTGAAAAAAATATTAGCCCAAAAGTG
GGGTTCAAAGTTCAAAATTTTCGACTCGCCCCAATGGAAAGAAGGAGACG
CCTTCACAAAGAACTTCGGTAAGATCCTTGCTACCGGAAACGAGTGGAAT
ATCATAGCAGGGGGCTACCCGGAAGCTCTCAGACGTACCAAGGTCGTGGA
GAACAACTGCAGATGGTTTACCATGTTTCGGCACCCGGTATCGCGTCTGG
TTTCTGCTTTTTTCTACTGTCGGAGTCACCAGGGGGACCAGTTGTGCGCA
CGTAGAGAAATCGATGTGCGAAGCATGGACCTTGTAACGTTTGCAAAGCA
CTGGGGCAATTTTGCGCTGCGACAATTCGCGCTCAGCATAGTACCCGCGG
ACGCTGTAATAGACCACTTGGTCTCGAAAACTGGGCGAGACGTCCAGGCG
CATTACATCAAGGCAACTCCGGGATGGTATCTGTCAAAACTGTACCTTGA
AGACCAAGCGGAGGCGTCGAAATACGGCGAACTTCCGGATGCGGCCTTGT
ACGACATGCTCCCTCTCGCGCAGGACTTGCTTCGGGACAGCTACGCTGCC
GTGGGTATCCTCGAGGAGTTCAACACCACTTTATCCTTGTTTGACGCGGC
TCTCGAGATTCCTGGGATGGATTGGCAGGCGGAATTCCAGCATGGCGGAA
AGAAGAGAAGCGTGGATGCGGCGGACGTGGCTGAGGAAGCTGATACTCTA
GCGGAAGCCTGGACCAACTCCGACATCAAGAGGTTCATGCACCTCGACCT
GCAACTGTATGAGCACGCTGTACATGTTTTCCACCAACAAAAAAAGCTGT
ATGATCTCGAGTAGCTCCAGAAATGCGGAGGAACAACCGTGAAAAAAATA
TTAGCCCAAAAGTGGGGTTCAAAGTTCAAAATTTTCGACTCGCCCCAATG
GAAAGAAGGAGACGCCTTCACAAAGAACTTCGGTAAGATCCTTGCTACCG
GAAACGAGTGGAATATCATAGCAGGGGGCTACCCGGAAGCTCTCAGACGT
ACCAAGGTCGTGGAGAACAACTGCAGATGGTTTACCATGTTTCGGCACCC
GGTATCGCGTCTGGTTTCTGCTTTTTTCTACTGTCGGAGTCACCAGGGGG
ACCAGTTGTGCGCACGTAGAGAAATCGATGTGCGAAGCATGGACCTTGTA
ACGTTTGCAAAGCACTGGGGCAATTTTGCGCTGCGACAATTCGCGCTCAG
CATAGTACCCGCGGACGCTGTAATAGACCACTTGGTCTCGAAAACTGGGC
GAGACGTCCAGGCGCATTACATCAAGGCAACTCCGGGATGGTATCTGTCA
AAACTGTACCTTGAAGACCAAGCGGAGGCGTCGAAATACGGCGAACTTCC
GGATGCGGCCTTGTACGACATGCTCCCTCTCGCGCAGGACTTGCTTCGGG
ACAGCTACGCTGCCGTGGGTATCCTCGAGGAGTTCAACACCACTTTATCC
TTGTTTGACGCGGCTCTCGAGATTCCTGGGATGGATTGGCAGGCGGAATT
CCAGCATGGCGGAAAGAAGAGAAGCGTGGATGCGGCGGACGTGGCTGAGG
AAGCTGATACTCTAGCGGAAGCCTGGACCAACTCCGACATCAAGAGGTTC
ATGCACCTCGACCTGCAACTGTATGAGCACGCTGTACATGTTTTCCACCA
ACAAAAAAAGCTGTATGATCTCGAGTAG
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