mRNA_D-herbacea_F_contig1020.372.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 310 bits (793), Expect = 4.090e-100 Identity = 155/300 (51.67%), Postives = 207/300 (69.00%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLE----------DQAEASKY----GELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
LQKCGG+TVK +L + +GS++ I+DS QWK GD + NFG LA G WN++AGGY EALRR++ V+ CR+FT+FRHP++R+VSA+FYCRS GD CA +D + +DL+TFAKHWGNFA+RQFAL VP+D V +++ + + + +K GWY K+YLE Q+EA +A LYD+L A DL+R Y AVGILE++NTTL LFD ALEIPGM W A+F GGK+R VD + E++TL +AWT+S++K++M LDL LYEHAV VFH+Q + Y L
Sbjct: 162 LQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQR-VDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 286 bits (733), Expect = 4.430e-91 Identity = 148/295 (50.17%), Postives = 196/295 (66.44%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLED-----QAEASKYGE----LPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
LQKCGG+TVK +L +WGS+F I+DS +WK GD F+ FG LA G++WN++ GGY EALR ++ V CR+FT+FRHP++R+VSA+FYCRS GD CA + + +DL+TFAKHWGNFALRQFAL VP+D DVQ + +K YL + ED Q EA + PDA LY++L A DL+RD Y AVGILE++NTTL LFD L++P M+W+ +F GK VD + E +TL +AWT+S++K++M LDL LYEHAV VFHQQ + + L
Sbjct: 183 LQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSD------------DVQEYQLKM----YLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHH-VDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 271 bits (694), Expect = 5.220e-86 Identity = 141/294 (47.96%), Postives = 189/294 (64.29%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENN-----CRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTG---RDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
LQK GGTTVK++L WGS+ +DS QWK+G + ++ LA+ W+ AGGY EALRRT + + CRWFT+FRHPVSRLVSA++YCR DQLCA + R++DLVTFA+HWGNFALRQFAL V D V D LVS G + A ++ PGWY+ KL+L D++ + L M DLLRD+YA VGILE++N TLSLFD+AL++PGM W+ EF+ GK +VD E+ D L +A ++ +I + + LDL+LY AV +F+QQ+ Y +
Sbjct: 94 LQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGVADDTSPEGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKL-NVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.970e-60 Identity = 123/307 (40.07%), Postives = 174/307 (56.68%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKI----FDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVE-NNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRS--MDLVTFAKHWGNFALRQFALSIVPADAVIDHLVS--KTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGE------------LPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
+ K GG+TVK +LA W + +DSPQW EG F ++F G+E +++ G Y E LR + C+WFT+FRHP+ RLVSA+FYC+ D LCA +D + DL FA+HWG+F LRQFAL+ V + ++ + V TG H ++ PGWY KLYL+ Q + + GE A + +L Q+LL + YAAVG+LE++ T+L LF+ AL +PG DW F GKK S D EEA+ L +WT+ ++R++ LDL LY++AV V +QQ Y L
Sbjct: 1 MNKAGGSTVKYMLAP-WTKAQNVTVGLYDSPQWLEGKDFAQDF-----LGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNS-DGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 196 bits (498), Expect = 2.840e-57 Identity = 111/286 (38.81%), Postives = 160/286 (55.94%), Query Frame = 1
Query: 1 LQKCGGTTVKKI----LAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVI-DHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGEL-PDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQ 840
+ K GG TV+K+ L +K G +FD +W G ++ + F K A GGY E LR + +C+WFT+FRHPVSR+VSA+FYC+ DQLCA +D +DL+TFA+HWGN+ LRQFAL+ + A+ V + +VS+ + + H P WY K YL + G P++ L L AQ+ L YAAVGI+EE++ ++ LF+ L + DW EFQ GKK S + L AW + ++K+F+ LD+ LY+HA+ V Q
Sbjct: 58 MNKSGGMTVRKMIMPFLTEK-GVSTALFDDIEWSSGRSYAETFVKENAV-----FTYGGYTEGLRMYD--DRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQ 335
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.770e-45 Identity = 106/297 (35.69%), Postives = 153/297 (51.52%), Query Frame = 1
Query: 7 KCGGTTVKKIL---AQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQ----------AEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
K GGTTVK L A+ + S + GD K +L ++ +IAGGY E LR + C+WFTM RHP++RL+SAF+YC DQLCA D+ FAKHWGN+AL QFAL +V + +V A P W+ +KLY E + + + E + D+L ++LLR +YAAVGILE + ++ LFD ALEIPG +W ++S + + E+ LA A T+ +++++ LDL LYE+A + +Q + YDL
Sbjct: 45 KAGGTTVKTHLRNYAESRNETVALCHSDWYARGD---KGIQDLL--NDKPVLIAGGYAEGLRTSAF--QGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIF-------AEEVDA------PAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNK--IVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.090e-45 Identity = 103/290 (35.52%), Postives = 151/290 (52.07%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSV---DAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDLE 861
+ K G + +++ ++W +FD+ QW+ GD F + ++A+ W ++ GG E+LR K E +C+W T+FRHP++RL+SA+ +C D +C E S LV FA+ WGNFA+RQFAL V AV + + R T WYL K YL ++ G D L ML + LL YAAVGI +E TT+ LF AL + G+DW + + G V D+AE ++ +A N I + LD+ LYEHA+HVF Q + +E
Sbjct: 279 MDKSGASGARRVATERWRKDELVFDTVQWRRGDGFAAD---VMAS--HWKLLHGGCVESLRNHK--ERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPTE----STGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQART-------GTSMWYLVKEYL------ARGGIAEDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGINEEVKQDSEYDIAE-SEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGIE 543
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 162 bits (410), Expect = 4.790e-45 Identity = 99/289 (34.26%), Postives = 149/289 (51.56%), Query Frame = 1
Query: 1 LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGG--KKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDLE 861
+ K G + +++ ++W +FD+ QW+ GD F + ++A+ W ++ GG E+LR K +C+W T+FRHP++RL+SA+ +C D +C E S L FA+ WGNFA+RQFAL+ V AV + + R T WYL K YL ++ G D L L + LL YAAVGI +E TT+ LF AL + G+DW + + G ++ D+ E++ +A N I + LD+ LYEHAVHVF Q + +E
Sbjct: 1 MDKSGASGARRVATEQWRKDELVFDTVQWRRGDGFAAD---VMAS--RWKLLHGGCVESLRNHK--GRSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPPTE----STGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQART-------GTSMWYLVKEYL------ARGGIAEDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGIE 265
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.270e-38 Identity = 81/212 (38.21%), Postives = 127/212 (59.91%), Query Frame = 1
Query: 226 FRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQAEASKY-------GELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQ 840
++ P+ RLVSA+FYC+ + D+LCA + + DL TFAKHWGN+ LRQF+L+ V A+ D ++ R + + PGWY K Y E+Q + + G D A+ +L +DLL +Y+AVGILE++ T+++LF+ AL++P +WQ ++ G+K +VD EEA L AW + + + + LD+ LY+HAV V ++Q
Sbjct: 18 YKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAE---DVFAAEQERGIDGRPVMF-PGWYRVKEYFENQFDVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRK-NVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQ 224
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.800e-37 Identity = 102/299 (34.11%), Postives = 151/299 (50.50%), Query Frame = 1
Query: 1 LQKCGGTTVKKIL---AQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNIIAGGYPEALRRTKVVENNCRWFTMFRHPVSRLVSAFFYCRSHQGDQLCARREIDVRSMDLVTFAKHWGNFALRQFALSIVPADAVIDHLVSKTGRDVQAHYIKATPGWYLSKLYLEDQ----------AEASKYGELPDAALYDMLPLAQDLLRDSYAAVGILEEFNTTLSLFDAALEIPGMDWQAEFQHGGKKRSVDAADVAEEADTLAEAWTNSDIKRFMHLDLQLYEHAVHVFHQQKKLYDL 858
+ K GGT++++++ A + F Q+ GD + +IL ++I G Y E LR V C+WFTM RHP++RLVSAF YC DQLCA R D+ FA+HWGN + QFAL+ + + D LV++ +P WY +KLY E + A S + + ++L ++LLR YAAVGILE++ T++ LFD AL++PG +W + R+V D + D L + T+ +K+ + LD+ LYEHA V Q Y L
Sbjct: 43 MNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGD---RGVQQIL--DRRPSLIWGAYTEGLRPYATVLG-CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAF---EDLNDILVTEV----------KSPPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTST-SASSTPRNVH--DSKAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1020.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1020.372.1 >prot_D-herbacea_F_contig1020.372.1 ID=prot_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=288bp LQKCGGTTVKKILAQKWGSKFKIFDSPQWKEGDAFTKNFGKILATGNEWNback to top mRNA from alignment at D-herbacea_F_contig1020:6358..7221- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1020.372.1 ID=mRNA_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=864bp|location=Sequence derived from alignment at D-herbacea_F_contig1020:6358..7221- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1020:6358..7221- >mRNA_D-herbacea_F_contig1020.372.1 ID=mRNA_D-herbacea_F_contig1020.372.1|Name=mRNA_D-herbacea_F_contig1020.372.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1728bp|location=Sequence derived from alignment at D-herbacea_F_contig1020:6358..7221- (Desmarestia herbacea DmunF female)back to top |