mRNA_D-herbacea_F_contig102.370.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig102.370.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE) HSP 1 Score: 271 bits (692), Expect = 5.180e-85 Identity = 125/208 (60.10%), Postives = 156/208 (75.00%), Query Frame = 3
Query: 291 RAPMNDRERRWAEIPEYYPEKDLLVFSHIHKTSGTSLSIMLANMFARTAVVPSSMPSKGLDVESLKGHDDAWWEQYQVMYSHNRPNVTDQIGVPPSKRPRLLVVIRNPLLQKASIFFESVCRFGLHIHD-GKIDQEEATQARISPGRPNSAMYSFCRDPKLWVGSSMYMKIYRNFQANWLSFGSVDRHRCMAPNLDMNAWVTKSEDVG 911
RAP ND +RRW+EIP Y P +DL+ FSHIHKT GTSL LAN+F RTA+VP+S PSKGL V L+GHD WW+ +Q+M+SHNR NVTD IG+PP+K PR+L+ IRNPLL KASIFFESVCRFG HI D G IDQE AT AR++ + Y+FCRDP++WVGS + K+YRNF+A WLS+G+ + H C+ P+ + N W DVG
Sbjct: 88 RAPANDVDRRWSEIPLYRPGQDLVFFSHIHKTGGTSL---LANVFPRTALVPTSHPSKGLRVNHLQGHDSEWWKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDDTDVG 292
BLAST of mRNA_D-herbacea_F_contig102.370.1 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.720e-21 Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query: 270 AWGGSGPRAPMN---------DRERRWAEIPEYYPEKDLLVFSHIHKTSGTSLSIMLANMFARTAVVPSSMPSKGLDVESLKGHDDAWWEQYQ-VMYSHN 539
A G GPR P N DRER+WAE+PEY+P++ LL F+HI KTSGTSLS +L ++F AVVP+S S + + ++GHDD WW Y+ V Y+HN
Sbjct: 29 AGGSRGPRPPSNHLGLRWFKQDRERKWAELPEYHPDEHLLFFAHIIKTSGTSLSFVLRDIFGEEAVVPTSHESGYMKLGEVQGHDDNWWAPYEAVTYAHN 128 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig102.370.1 >prot_D-herbacea_F_contig102.370.1 ID=prot_D-herbacea_F_contig102.370.1|Name=mRNA_D-herbacea_F_contig102.370.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=298bp MPAKVWPWTIHEPHAKRNMEEVDSRNGLKTRLRCVCFAAAFCGGLGLVIAback to top mRNA from alignment at D-herbacea_F_contig102:826683..854283- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig102.370.1 ID=mRNA_D-herbacea_F_contig102.370.1|Name=mRNA_D-herbacea_F_contig102.370.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=27601bp|location=Sequence derived from alignment at D-herbacea_F_contig102:826683..854283- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig102:826683..854283- >mRNA_D-herbacea_F_contig102.370.1 ID=mRNA_D-herbacea_F_contig102.370.1|Name=mRNA_D-herbacea_F_contig102.370.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1788bp|location=Sequence derived from alignment at D-herbacea_F_contig102:826683..854283- (Desmarestia herbacea DmunF female)back to top |