mRNA_D-herbacea_F_contig102.368.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.368.1
Unique NamemRNA_D-herbacea_F_contig102.368.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:813858..814374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.9587603-CDS-D-herbacea_F_contig102:813857..8141721622927430.9587603-CDS-D-herbacea_F_contig102:813857..814172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 813858..814172 +
1690790166.4088883-CDS-D-herbacea_F_contig102:813857..8141721690790166.4088883-CDS-D-herbacea_F_contig102:813857..814172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 813858..814172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927431.040916-UTR-D-herbacea_F_contig102:814172..8143741622927431.040916-UTR-D-herbacea_F_contig102:814172..814374Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 814173..814374 +
1690790166.4176807-UTR-D-herbacea_F_contig102:814172..8143741690790166.4176807-UTR-D-herbacea_F_contig102:814172..814374Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 814173..814374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.368.1prot_D-herbacea_F_contig102.368.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 813858..814172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.368.1

>prot_D-herbacea_F_contig102.368.1 ID=prot_D-herbacea_F_contig102.368.1|Name=mRNA_D-herbacea_F_contig102.368.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=105bp
RIKIINYGAVRYGFEIVRIVRCGADLSFLKSYGAVRCGFEEVKNRTVRCG
APITSHINNTITTERSKPYGLGSTSTIPAYSSPSTVILTGYLRRCLPLEI
QSCC*
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mRNA from alignment at D-herbacea_F_contig102:813858..814374+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.368.1 ID=mRNA_D-herbacea_F_contig102.368.1|Name=mRNA_D-herbacea_F_contig102.368.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=517bp|location=Sequence derived from alignment at D-herbacea_F_contig102:813858..814374+ (Desmarestia herbacea DmunF female)
CGGATAAAAATCATTAATTACGGTGCGGTGCGGTACGGATTTGAAATTGT
GAGAATCGTACGGTGCGGTGCGGATCTCTCTTTCCTAAAATCCTACGGTG
CCGTGCGGTGCGGTTTCGAGGAGGTCAAAAATCGTACGGTGCGGTGCGGT
GCCCCTATAACGTCGCATATCAATAATACCATAACAACAGAACGCTCCAA
ACCTTATGGGCTAGGCTCTACATCCACGATCCCTGCATACAGCAGCCCTT
CCACCGTTATCTTAACAGGATATTTACGGAGGTGTTTACCCCTAGAAATA
CAGAGTTGTTGTTAGGGTTAGGGTTAGTTCTAGATATTGTTCCGAAATGC
TGAACAGCTCCCGCTTTAGCGTTATTCGAAAAATGAAAACGAACATCCCA
TTAAAGATCCTGTCGAAGCAAGTGTAAAAACATCAATCGCGACCCACTGG
TATTGAGGTCTATATTTTTCGTAAAAAAAAAAACGCATCCGTAAAGAAAA
CCGAACACCCTCGTGAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:813858..814374+

>mRNA_D-herbacea_F_contig102.368.1 ID=mRNA_D-herbacea_F_contig102.368.1|Name=mRNA_D-herbacea_F_contig102.368.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=630bp|location=Sequence derived from alignment at D-herbacea_F_contig102:813858..814374+ (Desmarestia herbacea DmunF female)
CGGATAAAAATCATTAATTACGGTGCGGTGCGGTACGGATTTGAAATTGT
GAGAATCGTACGGTGCGGTGCGGATCTCTCTTTCCTAAAATCCTACGGTG
CCGTGCGGTGCGGTTTCGAGGAGGTCAAAAATCGTACGGTGCGGTGCGGT
GCCCCTATAACGTCGCATATCAATAATACCATAACAACAGAACGCTCCAA
ACCTTATGGGCTAGGCTCTACATCCACGATCCCTGCATACAGCAGCCCTT
CCACCGTTATCTTAACAGGATATTTACGGAGGTGTTTACCCCTAGAAATA
CAGAGTTGTTGTTAGCGGATAAAAATCATTAATTACGGTGCGGTGCGGTA
CGGATTTGAAATTGTGAGAATCGTACGGTGCGGTGCGGATCTCTCTTTCC
TAAAATCCTACGGTGCCGTGCGGTGCGGTTTCGAGGAGGTCAAAAATCGT
ACGGTGCGGTGCGGTGCCCCTATAACGTCGCATATCAATAATACCATAAC
AACAGAACGCTCCAAACCTTATGGGCTAGGCTCTACATCCACGATCCCTG
CATACAGCAGCCCTTCCACCGTTATCTTAACAGGATATTTACGGAGGTGT
TTACCCCTAGAAATACAGAGTTGTTGTTAG
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