mRNA_D-herbacea_F_contig102.367.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.367.1
Unique NamemRNA_D-herbacea_F_contig102.367.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: UPI0017839E41 (ankyrin-2 n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI0017839E41)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-6
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    7 PLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPHAK-IRQGSPALHLAITGKRSCELAALMIKGGVDVEATN 291
            P+H A   G V  V +LI  GASLD+ +S G+TPL + +     ++A  LL  GA+P+ K +  G  ALHLAI   RS  +A ++++   ++  T+
Sbjct:  171 PIHYAAACGHVECVRMLITHGASLDVVNSDGYTPLHVGVAYV--EVAHLLLKHGANPNLKTLNTGETALHLAIRN-RSVAVANVILQTNANINETD 263          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A0R3TB82_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TB82_RODNA)

HSP 1 Score: 56.6 bits (135), Expect = 2.310e-6
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    7 PLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPHAKIRQGSPALHLAI 222
            PLH AV  G +  V  L+ +G  L++F+SS FTPL +AL++    IA FL+  GASP++   +   AL++AI
Sbjct:  293 PLHHAVESGFMQGVIQLVNQGCQLELFNSSHFTPLMLALKRHHIAIAEFLIHQGASPYSLNPKYESALNMAI 364          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A6H5HYD7_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HYD7_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 8.710e-6
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    7 PLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPH--------AKIRQGSPALHLAITGKRSCE-LAALMIKGGVDVEATNA 294
            PLH A++ G +N+VE+L++ GAS ++ D+  FTPL    E+K  D      F   +          AK  +GS  LHLA++  R C+ L  L++K   D    NA
Sbjct:  569 PLHEAIFNGNMNLVEILLRRGASPNVADNDKFTPLHAICERKNSDDGLAKRFFEINDELNQLVEVDAKNEEGSTPLHLALS--RGCKKLNELLLKRHADPNIANA 671          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A6H5HWA8_9HYME (THAP-type domain-containing protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HWA8_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 8.950e-6
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    7 PLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPH--------AKIRQGSPALHLAITGKRSCE-LAALMIKGGVDVEATNA 294
            PLH A++ G +N+VE+L++ GAS ++ D+  FTPL    E+K  D      F   +          AK  +GS  LHLA++  R C+ L  L++K   D    NA
Sbjct:  749 PLHEAIFNGNMNLVEILLRRGASPNVADNDKFTPLHAICERKNSDDGLAKRFFEINDELNQLVEVDAKNEEGSTPLHLALS--RGCKKLNELLLKRHADPNIANA 851          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A6H5IZY6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IZY6_9HYME)

HSP 1 Score: 53.9 bits (128), Expect = 2.240e-5
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    7 PLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPH--------AKIRQGSPALHLAITGKRSCE-LAALMIKGGVDVEATNA 294
            PLH A++ G +N+VE+L++ GAS ++ D+   TPL    E+K  D      F   +          AK  +GS  LHLA++    C+ L  L++K   D   TNA
Sbjct:  658 PLHEAIFNGNINLVEILLRRGASPNLADNDKLTPLHAICERKNSDDGLAKRFFEINDELNQLVEVDAKNEEGSTPLHLALS--HGCKKLNELLLKRHADPNLTNA 760          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A067BP64_SAPPC (TKL protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BP64_SAPPC)

HSP 1 Score: 53.5 bits (127), Expect = 2.920e-5
Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    4 APLHRAVYYGLVNVVEVLIKEG-ASLDMFDSSGFTPLSIALEQKRHDIAWFLLFCGASPHAKIRQGSPALHLAITGKRSCELAALMIKGG-VDVEATN 291
            +PLH A     + ++ VL+ +  A+++  +  G+TPL+IA+++ R D+A  LL  GA    ++   +P LHLAIT   S  L  L +    VD+  T+
Sbjct:  412 SPLHVAAKTASMGMLYVLLTQDLANINATNEEGYTPLAIAVQEGRSDVAALLLSVGADISTQLSDHAPLLHLAITTGSSLHLLDLFLSAPRVDINQTD 509          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A1S3M900_SALSA (NF-kappa-B inhibitor epsilon n=15 Tax=Salmonidae TaxID=8015 RepID=A0A1S3M900_SALSA)

HSP 1 Score: 53.1 bits (126), Expect = 3.240e-5
Identity = 34/95 (35.79%), Postives = 48/95 (50.53%), Query Frame = 1
Query:    1 QAPLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLF------CGASPHAKIRQGSPALHLAITGKRSCELAALMIKG 267
            Q PLH A Y  L +VV  L++ GASL++ D  G TPL +A EQ +   A  +         G+    +  +G   LHLA   ++ C +  LM KG
Sbjct:  149 QTPLHLATYLSLSSVVRGLVESGASLELQDQEGNTPLHVACEQGQAKCATEMTRDVSPSKLGSVLETQNWRGLTCLHLATVNRQHCLMKLLMKKG 243          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A4W5N489_9TELE (T-complex-associated-testis-expressed 1 n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5N489_9TELE)

HSP 1 Score: 53.1 bits (126), Expect = 3.780e-5
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 1
Query:    1 QAPLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLF------CGASPHAKIRQGSPALHLAITGKRSCELAALMIKG 267
            Q PLH A Y  L  VV  L++ GASL++ D  G TPL +A EQ R   A  +         G+    +  +G   LHLA   ++ C +  LM KG
Sbjct:  432 QTPLHLATYLSLSLVVRGLVESGASLELQDQEGNTPLHVACEQGRAKCATEMTRDVSPSELGSVLETQNWRGLTCLHLATVNRQHCLMKLLMKKG 526          
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Match: A0A674DHD4_SALTR (Solute carrier family 35 member B2 n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674DHD4_SALTR)

HSP 1 Score: 52.0 bits (123), Expect = 8.790e-5
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 1
Query:    1 QAPLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAWFLLF------CGASPHAKIRQGSPALHLAITGKRSCELAALMIKG 267
            Q PLH A Y  L +VV  L++ GASL++ D  G TPL +A +Q +   A  +         G+    +  +G   LHLA   ++ C +  LM KG
Sbjct:  149 QTPLHLATYLSLSSVVRGLVESGASLELQDQEGNTPLHVACQQGQAKCATEMTRDVSPSKLGSVLETQNWRGLTCLHLATVNRQHCLMKLLMKKG 243          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0017839E411.760e-637.50ankyrin-2 n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI... [more]
A0A0R3TB82_RODNA2.310e-643.06Uncharacterized protein n=1 Tax=Rodentolepis nana ... [more]
A0A6H5HYD7_9HYME8.710e-635.24Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5HWA8_9HYME8.950e-635.24THAP-type domain-containing protein n=1 Tax=Tricho... [more]
A0A6H5IZY6_9HYME2.240e-534.29Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A067BP64_SAPPC2.920e-533.67TKL protein kinase n=1 Tax=Saprolegnia parasitica ... [more]
A0A1S3M900_SALSA3.240e-535.79NF-kappa-B inhibitor epsilon n=15 Tax=Salmonidae T... [more]
A0A4W5N489_9TELE3.780e-536.84T-complex-associated-testis-expressed 1 n=1 Tax=Hu... [more]
A0A674DHD4_SALTR8.790e-534.74Solute carrier family 35 member B2 n=1 Tax=Salmo t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:795985..796470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D8LPG8
KEGG koko:K10626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.3.2.27
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.9123642-CDS-D-herbacea_F_contig102:795984..7964701622927430.9123642-CDS-D-herbacea_F_contig102:795984..796470Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 795985..796470 +
1690790166.3983529-CDS-D-herbacea_F_contig102:795984..7964701690790166.3983529-CDS-D-herbacea_F_contig102:795984..796470Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 795985..796470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.367.1prot_D-herbacea_F_contig102.367.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 795985..796470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.367.1

>prot_D-herbacea_F_contig102.367.1 ID=prot_D-herbacea_F_contig102.367.1|Name=mRNA_D-herbacea_F_contig102.367.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=162bp
QAPLHRAVYYGLVNVVEVLIKEGASLDMFDSSGFTPLSIALEQKRHDIAW
FLLFCGASPHAKIRQGSPALHLAITGKRSCELAALMIKGGVDVEATNAKG
HTALHVACANGGSISLVACIVAANADVNARDENGDTPLMVACRHCSSKVV
SYLLRHGADDTL
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mRNA from alignment at D-herbacea_F_contig102:795985..796470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.367.1 ID=mRNA_D-herbacea_F_contig102.367.1|Name=mRNA_D-herbacea_F_contig102.367.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=486bp|location=Sequence derived from alignment at D-herbacea_F_contig102:795985..796470+ (Desmarestia herbacea DmunF female)
CAAGCCCCCCTTCATCGGGCGGTGTACTACGGGCTTGTAAACGTAGTTGA GGTCTTGATCAAGGAGGGGGCTTCACTCGATATGTTCGACAGCTCAGGTT TCACCCCTTTGTCGATAGCGCTTGAACAAAAACGTCACGATATCGCCTGG TTCCTTCTTTTTTGTGGCGCTAGCCCACACGCTAAAATTCGTCAAGGATC ACCGGCACTTCATTTAGCCATAACAGGGAAGAGGTCTTGTGAGCTAGCCG CACTTATGATAAAAGGAGGAGTGGACGTCGAGGCTACGAACGCGAAGGGG CATACTGCTCTCCACGTAGCGTGCGCCAATGGGGGGTCGATCTCGCTTGT CGCATGCATTGTCGCCGCTAACGCCGACGTGAACGCGAGGGATGAAAATG GTGACACGCCTCTAATGGTGGCCTGTCGGCATTGTTCCTCCAAGGTTGTC TCGTATTTACTGCGTCACGGGGCTGACGATACTCTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:795985..796470+

>mRNA_D-herbacea_F_contig102.367.1 ID=mRNA_D-herbacea_F_contig102.367.1|Name=mRNA_D-herbacea_F_contig102.367.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=972bp|location=Sequence derived from alignment at D-herbacea_F_contig102:795985..796470+ (Desmarestia herbacea DmunF female)
CAAGCCCCCCTTCATCGGGCGGTGTACTACGGGCTTGTAAACGTAGTTGA
GGTCTTGATCAAGGAGGGGGCTTCACTCGATATGTTCGACAGCTCAGGTT
TCACCCCTTTGTCGATAGCGCTTGAACAAAAACGTCACGATATCGCCTGG
TTCCTTCTTTTTTGTGGCGCTAGCCCACACGCTAAAATTCGTCAAGGATC
ACCGGCACTTCATTTAGCCATAACAGGGAAGAGGTCTTGTGAGCTAGCCG
CACTTATGATAAAAGGAGGAGTGGACGTCGAGGCTACGAACGCGAAGGGG
CATACTGCTCTCCACGTAGCGTGCGCCAATGGGGGGTCGATCTCGCTTGT
CGCATGCATTGTCGCCGCTAACGCCGACGTGAACGCGAGGGATGAAAATG
GTGACACGCCTCTAATGGTGGCCTGTCGGCATTGTTCCTCCAAGGTTGTC
TCGTATTTACTGCGTCACGGGGCTGACGATACTCTCCAAGCCCCCCTTCA
TCGGGCGGTGTACTACGGGCTTGTAAACGTAGTTGAGGTCTTGATCAAGG
AGGGGGCTTCACTCGATATGTTCGACAGCTCAGGTTTCACCCCTTTGTCG
ATAGCGCTTGAACAAAAACGTCACGATATCGCCTGGTTCCTTCTTTTTTG
TGGCGCTAGCCCACACGCTAAAATTCGTCAAGGATCACCGGCACTTCATT
TAGCCATAACAGGGAAGAGGTCTTGTGAGCTAGCCGCACTTATGATAAAA
GGAGGAGTGGACGTCGAGGCTACGAACGCGAAGGGGCATACTGCTCTCCA
CGTAGCGTGCGCCAATGGGGGGTCGATCTCGCTTGTCGCATGCATTGTCG
CCGCTAACGCCGACGTGAACGCGAGGGATGAAAATGGTGACACGCCTCTA
ATGGTGGCCTGTCGGCATTGTTCCTCCAAGGTTGTCTCGTATTTACTGCG
TCACGGGGCTGACGATACTCTC
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