mRNA_D-herbacea_F_contig102.355.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A835YL21_9STRA (HopJ type III effector protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL21_9STRA) HSP 1 Score: 136 bits (342), Expect = 3.280e-38 Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 3
Query: 138 MGMGGGETEVS-EAFRQLLVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
M + G +T S AF L ++V FEDT+ IA + + PK F NG + AG NEGSCKVFS G +A L E+ TL+CFG+HYR V+ADP+G +H NIR+FME+GW GV FP+G+AL+PK
Sbjct: 1 MSVAGVDTPSSISAFAARLAQASDAVTFEDTMEVIAANYEFAPKPFTNGDVHNAAGTNEGSCKVFSFGKLAALDEASTLSCFGQHYRDVLADPAGAAHANIRSFMEAGWGGVHFPEGVALTPK 123
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A813DYZ3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DYZ3_POLGL) HSP 1 Score: 135 bits (340), Expect = 2.320e-37 Identity = 62/100 (62.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query: 204 ESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
+ + F +T+ AIA F YTPK+FVNG S AG NEGSC+VFSLG +AG SE+E LACFGEHY+ V+ DP+G SHGNIRAFM+ GW V FPD +AL P
Sbjct: 21 QELAFAETLAAIAADFEYTPKQFVNGGVESAAGSNEGSCEVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMKHGWAVVDFPDSVALEPS 120
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A813DTD3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTD3_POLGL) HSP 1 Score: 145 bits (366), Expect = 4.320e-37 Identity = 68/99 (68.69%), Postives = 76/99 (76.77%), Query Frame = 3
Query: 207 SVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
S F +T+ AIA F YTPKRFVNG S AG NEGSCKVFSLG +AG SE+E LACFGEHY+ V+ DP+G SHGNIRAFME GW GV FPDG+AL P
Sbjct: 252 SAAFAETLVAIAADFEYTPKRFVNGGVESAAGSNEGSCKVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMEHGWAGVDFPDGVALEPS 350
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A7S3XKA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKA2_HETAK) HSP 1 Score: 126 bits (317), Expect = 9.440e-34 Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 3
Query: 177 FRQLLVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
F+ L P+ V FE+T+G I+ ++YT K F NG S+ AG N GSCKVFS G +A LSE +TL CFGEHYR V++DP G +HGNIR FM GW G+ F +GL L+ K
Sbjct: 66 FKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 174
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A1G3IS42_9PROT (Type III effector n=1 Tax=Sideroxydans sp. RIFOXYB12_FULL_59_6 TaxID=1802155 RepID=A0A1G3IS42_9PROT) HSP 1 Score: 120 bits (302), Expect = 2.940e-32 Identity = 57/110 (51.82%), Postives = 78/110 (70.91%), Query Frame = 3
Query: 177 FRQLLVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRS-VVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
F Q L D P+SV F++T+ I E +++TP F+NG T ++AG N GSCK+FS + GLS+ +TL CFG++YR V+ +P G H NIR FM+SGWEG+SF +G AL PK
Sbjct: 6 FLQRLHDSPDSVCFKETMALIDELYDFTPTAFINGATRNEAGQNNGSCKLFSFAKLHGLSQQQTLTCFGDYYRKDVLGNPDGTDHANIRNFMKSGWEGISF-EGSALKPK 114
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A4Q7YNP1_9GAMM (HopJ type III effector protein n=1 Tax=Fluviicoccus keumensis TaxID=1435465 RepID=A0A4Q7YNP1_9GAMM) HSP 1 Score: 118 bits (295), Expect = 3.260e-31 Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query: 216 FEDTVGAIAEGFNYTPKRFVNGVTS---SDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
FEDT+ I + Y P RF NG+T S+AG NEGSC++F+ G + GLS +TL CFG HYR V+ADP G SHGNIR FM GW G++F DG LSPK
Sbjct: 16 FEDTIALINALYEYRPTRFSNGLTDTLVSEAGQNEGSCRIFAFGQLNGLSAEDTLRCFGRHYRDVLADPDGSSHGNIRRFMRDGWAGIAF-DGPVLSPK 113
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A2E9DDM5_9GAMM (Type III effector n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DDM5_9GAMM) HSP 1 Score: 117 bits (293), Expect = 6.170e-31 Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query: 204 ESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
E++ FED + I E F YTP F NG ++AG NEGSCK+ + G +AGLSE++TLACFG YR V+A P G HGNIR FM+ GW G+ F +G+ L+P+
Sbjct: 14 ETIDFEDVIAFIGEHFEYTPCAFRNGDLHNEAGQNEGSCKILAFGQLAGLSEAQTLACFGRFYRDVLATPEGSDHGNIRNFMDKGWSGIRF-EGIPLAPR 112
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A6S6S0H3_9GAMM (Type III effector HopPmaJ n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6S0H3_9GAMM) HSP 1 Score: 117 bits (293), Expect = 6.350e-31 Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 3
Query: 189 LVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
L + ES++F D + AI + YTP+ F NG + AG NEGSCKVF+ + LS+ +TL CF EHYRSV+A P G+ HGNIR FME+GW+G++F G+AL K
Sbjct: 10 LNNNSESLVFSDVIAAIDANYEYTPQTFKNGEVENAAGTNEGSCKVFAFAQLNDLSQEQTLTCFAEHYRSVLATPEGNDHGNIRNFMETGWDGINFT-GVALQAK 113
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A7V2EVB4_9GAMM (Type III effector n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V2EVB4_9GAMM) HSP 1 Score: 115 bits (287), Expect = 6.110e-30 Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 3
Query: 204 ESVMFEDTVGAIAEGFNYTPKRFVNGV----TSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYRSVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPKDG 509
E V F DT+ I E ++YTP F NGV S AG NEGSCKVF+ G + GLSE +TLACFGEHY++V+ DP+G H NIR FM GW+G+ F + + L+PK G
Sbjct: 15 EVVPFADTLALIGELYDYTPTAFGNGVGEDRLDSPAGTNEGSCKVFAFGRLNGLSEQDTLACFGEHYQAVLDDPAGSGHPNIRLFMRHGWDGIVF-EAMPLAPKAG 119
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Match: A0A562SH53_9BACT (HopJ type III effector protein n=1 Tax=Lacibacter cauensis TaxID=510947 RepID=A0A562SH53_9BACT) HSP 1 Score: 114 bits (285), Expect = 1.060e-29 Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 3
Query: 171 EAFRQLLVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTSSDAGVNEGSCKVFSLGNIAGLSESETLACFGEHYR-SVVADPSGDSHGNIRAFMESGWEGVSFPDGLALSPK 503
E F L PES+ F DT+ I +N+TP RF NG ++AG N GSCK+FS + GLS+ ETLACFG++YR V+ +P +H NIR FM +GWEGVSF D AL K
Sbjct: 4 EDFLNKLRSNPESIAFTDTIEVIDSNYNFTPVRFTNGTAVNEAGTNSGSCKLFSFAQLQGLSKEETLACFGDYYRIDVLQNPESTNHANIRNFMVTGWEGVSF-DADALQTK 114 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig102.355.1 >prot_D-herbacea_F_contig102.355.1 ID=prot_D-herbacea_F_contig102.355.1|Name=mRNA_D-herbacea_F_contig102.355.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=125bp MGMGGGETEVSEAFRQLLVDEPESVMFEDTVGAIAEGFNYTPKRFVNGVTback to top mRNA from alignment at D-herbacea_F_contig102:487938..492050+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig102.355.1 ID=mRNA_D-herbacea_F_contig102.355.1|Name=mRNA_D-herbacea_F_contig102.355.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4113bp|location=Sequence derived from alignment at D-herbacea_F_contig102:487938..492050+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig102:487938..492050+ >mRNA_D-herbacea_F_contig102.355.1 ID=mRNA_D-herbacea_F_contig102.355.1|Name=mRNA_D-herbacea_F_contig102.355.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=750bp|location=Sequence derived from alignment at D-herbacea_F_contig102:487938..492050+ (Desmarestia herbacea DmunF female)back to top |