mRNA_D-herbacea_F_contig102.352.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.352.1
Unique NamemRNA_D-herbacea_F_contig102.352.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.420e-35
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHEREQFERSGARFLPVHDMVASLRYLTKGVVEGEFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            VPLFW +AYEGEGD+  W   E+  F  SGARF+PVH MV SL+YLTKGVVEGE NPHFCMPGPPNEIG+LLL++AWA++ E+
Sbjct:  335 VPLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVKSLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAER 417
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.830e-33
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHEREQFERSGARFLPVHDMVASLRYLTKGVVEGEFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            V LFW +AYEGEGD+  W   E+  F  SGARF+PVH MV SL+YLTKGVVEGE NPHFCMPGPPNEIG+LLL++AWA++ E+
Sbjct:  331 VTLFWTSAYEGEGDVGAWLPEEQALFWDSGARFVPVHRMVESLKYLTKGVVEGENNPHFCMPGPPNEIGILLLEMAWAVYAER 413
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.280e-27
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHERE-QFERSGARFLPVHDMVASLRYLTKGVVEG--EFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            VP FWL+ YEG+GD + W+  +RE  F  SGA+F+ V DMV  L  LT+ VVE   E +PHFCMPGPP+E+G+LLLKL WALH EK
Sbjct:  100 VPFFWLSTYEGKGDPQRWNSPQRETDFPGSGAKFVRVVDMVQGLHRLTRKVVERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEK 185
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.190e-26
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHEREQFERSGARFLPVHDMVASLRYLTKGVVEGEFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            VP  WL+ Y G G +  W++ ++EQF +SGARF+ V  M+  L   TKG VEG  +PHFC+PGPP+E+G+LLLK+ WA+H E+
Sbjct:  132 VPFLWLSTYVGRGSVDLWNDAQQEQFTQSGARFVNVGHMMFGLSNFTKGAVEGGNDPHFCLPGPPDELGLLLLKIIWAIHQER 214
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.900e-25
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHERE-QFERSGARFLPVHDMVASLRYLTKGVVEG--EFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            VP FWL+ YEG+GD + W+  +RE  F  SGA+F+ V D+V  L  LT+ VVE   E +PHFCMPGPP+E+G+LLLKL WALH EK
Sbjct:  366 VPFFWLSTYEGKGDPQRWNSRQRETDFWESGAKFVRVFDIVQGLHSLTRKVVERTVENDPHFCMPGPPDEVGILLLKLLWALHHEK 451
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BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.050e-25
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    4 VPLFWLTAYEGEGDIRDWDEHEREQFERSGARFLPVHDMVASLRYLTKGVVEGEFNPHFCMPGPPNEIGVLLLKLAWALHGEK 252
            VP  WL+ Y+G G +  W++ ++E+F +SGARF+ V  M+  L   TKG VE   +PHFC+PGPP+E+G LLLK+ WAL+ E+
Sbjct:  132 VPFLWLSTYDGHGSVDLWNDAQKEKFSQSGARFVNVGHMLFGLSNFTKGAVEDRVDPHFCLPGPPDELGFLLLKIIWALYQER 214
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2P7_ECTSI7.420e-3569.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUF6_9PHAE1.830e-3368.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G974_ECTSI6.280e-2759.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5J2_9PHAE7.190e-2651.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAG2_9PHAE4.900e-2558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBA5_9PHAE8.050e-2549.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:421196..421471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size276
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.352.1prot_D-herbacea_F_contig102.352.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 421313..421465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.2664623-UTR-D-herbacea_F_contig102:421195..4213121622927433.2664623-UTR-D-herbacea_F_contig102:421195..421312Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 421196..421312 +
1690790167.8324807-UTR-D-herbacea_F_contig102:421195..4213121690790167.8324807-UTR-D-herbacea_F_contig102:421195..421312Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 421196..421312 +
1622927433.2935286-UTR-D-herbacea_F_contig102:421465..4214711622927433.2935286-UTR-D-herbacea_F_contig102:421465..421471Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 421466..421471 +
1690790167.8508677-UTR-D-herbacea_F_contig102:421465..4214711690790167.8508677-UTR-D-herbacea_F_contig102:421465..421471Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 421466..421471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927433.2799783-CDS-D-herbacea_F_contig102:421312..4214651622927433.2799783-CDS-D-herbacea_F_contig102:421312..421465Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 421313..421465 +
1690790167.8416378-CDS-D-herbacea_F_contig102:421312..4214651690790167.8416378-CDS-D-herbacea_F_contig102:421312..421465Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 421313..421465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.352.1

>prot_D-herbacea_F_contig102.352.1 ID=prot_D-herbacea_F_contig102.352.1|Name=mRNA_D-herbacea_F_contig102.352.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=51bp
MVASLRYLTKGVVEGEFNPHFCMPGPPNEIGVLLLKLAWALHGEKERRDR
*
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mRNA from alignment at D-herbacea_F_contig102:421196..421471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.352.1 ID=mRNA_D-herbacea_F_contig102.352.1|Name=mRNA_D-herbacea_F_contig102.352.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=276bp|location=Sequence derived from alignment at D-herbacea_F_contig102:421196..421471+ (Desmarestia herbacea DmunF female)
GACGTGCCCCTCTTTTGGCTGACAGCCTACGAGGGAGAGGGGGACATCAG
GGACTGGGATGAGCACGAGCGGGAGCAGTTCGAGCGGTCCGGGGCGAGAT
TTCTTCCGGTGCACGACATGGTGGCGAGCTTGAGATACCTGACAAAGGGC
GTGGTGGAAGGGGAGTTCAACCCGCATTTTTGCATGCCGGGCCCCCCGAA
CGAGATCGGGGTTTTGTTGTTGAAGTTGGCGTGGGCGTTGCACGGGGAGA
AGGAGCGACGGGATCGGTGATGGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:421196..421471+

>mRNA_D-herbacea_F_contig102.352.1 ID=mRNA_D-herbacea_F_contig102.352.1|Name=mRNA_D-herbacea_F_contig102.352.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=306bp|location=Sequence derived from alignment at D-herbacea_F_contig102:421196..421471+ (Desmarestia herbacea DmunF female)
ATGGTGGCGAGCTTGAGATACCTGACAAAGGGCGTGGTGGAAGGGGAGTT
CAACCCGCATTTTTGCATGCCGGGCCCCCCGAACGAGATCGGGGTTTTGT
TGTTGAAGTTGGCGTGGGCGTTGCACGGGGAGAAGGAGCGACGGGATCGG
TGAATGGTGGCGAGCTTGAGATACCTGACAAAGGGCGTGGTGGAAGGGGA
GTTCAACCCGCATTTTTGCATGCCGGGCCCCCCGAACGAGATCGGGGTTT
TGTTGTTGAAGTTGGCGTGGGCGTTGCACGGGGAGAAGGAGCGACGGGAT
CGGTGA
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