mRNA_D-herbacea_F_contig102.347.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.347.1
Unique NamemRNA_D-herbacea_F_contig102.347.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:368612..372144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size780
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.347.1prot_D-herbacea_F_contig102.347.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 368613..372144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.4662971-CDS-D-herbacea_F_contig102:368612..3687591622927430.4662971-CDS-D-herbacea_F_contig102:368612..368759Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 368613..368759 -
1690790166.1860342-CDS-D-herbacea_F_contig102:368612..3687591690790166.1860342-CDS-D-herbacea_F_contig102:368612..368759Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 368613..368759 -
1622927430.475851-CDS-D-herbacea_F_contig102:370290..3706921622927430.475851-CDS-D-herbacea_F_contig102:370290..370692Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 370291..370692 -
1690790166.1962333-CDS-D-herbacea_F_contig102:370290..3706921690790166.1962333-CDS-D-herbacea_F_contig102:370290..370692Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 370291..370692 -
1622927430.488172-CDS-D-herbacea_F_contig102:371335..3714761622927430.488172-CDS-D-herbacea_F_contig102:371335..371476Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 371336..371476 -
1690790166.2042382-CDS-D-herbacea_F_contig102:371335..3714761690790166.2042382-CDS-D-herbacea_F_contig102:371335..371476Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 371336..371476 -
1622927430.4991984-CDS-D-herbacea_F_contig102:372057..3721441622927430.4991984-CDS-D-herbacea_F_contig102:372057..372144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 372058..372144 -
1690790166.2139149-CDS-D-herbacea_F_contig102:372057..3721441690790166.2139149-CDS-D-herbacea_F_contig102:372057..372144Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 372058..372144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.347.1

>prot_D-herbacea_F_contig102.347.1 ID=prot_D-herbacea_F_contig102.347.1|Name=mRNA_D-herbacea_F_contig102.347.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=259bp
SGEGNGGRGPGGMKRRRSEDGDNCQNGGENHDPFRFPSPLREGVFGRKGD
LLGVLSDRTNSGRVGSLCEKRRRKNQEKENAIALNSNAQDRWAHQDNNRH
TIQSPWGREIREAIRYDKSLPGIKSPRHPGASPESKAMAVLSSKKDCVNG
DGHIDYHGLLSTSKLGDRASPVGAQRGLQLLDNGVRAVDGATMAMRKKRM
LERDAEEQKQIEAAMAASQEEASFCQETQQETQLARASQLSPVGVSGEAV
GDGDDDLQQ
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mRNA from alignment at D-herbacea_F_contig102:368612..372144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.347.1 ID=mRNA_D-herbacea_F_contig102.347.1|Name=mRNA_D-herbacea_F_contig102.347.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3533bp|location=Sequence derived from alignment at D-herbacea_F_contig102:368612..372144- (Desmarestia herbacea DmunF female)
TCCGGCGAGGGTAACGGTGGGCGTGGCCCGGGCGGAATGAAGCGTCGCCG
CAGCGAAGACGGAGATAATTGTCAGAACGGGGGAGAGGTGGGTGCCGTAT
TTTCGTGTTGATTGGTTATGATCGCCGTTAGCACCGTGTGGCGAGGTGGT
CAACAATTTGTCAATGATGTAGGGCTACAATACTGTAGTAGTCAATGATC
TAGGGCTACCTTACTGTAGTACCCTTCGTTGGTACGTGTGTCGGAGAGGG
AGCGTGTGTGTCTTGCCGTCGTCCCATTACAGCAGTAGCCTGTTTTGTTT
TTGGGACCCGGGGTCACATAGTCGGATCCATCTCCCCCGCCAATGCCGGT
GTCCGCCTTGGAGATTTTTGTCGCACGCTATGGTAAGTTCACCACTCCCT
TCGCTCGTCGAGTTGCGGTGAGGTGGGAGTGTCCTGTGTTGACACGGGGG
CGGGGGGGAGGCATTTCAACTCGAATTGAAACTACGGGGATAGAGGTGTC
AAATAAGTTTTGCGCAGAGCCGCGTTCAGTGCCGCTGCTGCCTCCTAGGG
AGATATATCAATGTACGTGTCCGAGTGCTGTACGAGTACCCTTATCTCGA
ATTGCGTCCTCGCCCCATTTCTCTTTTTTTCTTTTCTTTTTTTTTATCGT
GGCGACAACCGGTGACAGAATCACGACCCATTCAGATTCCCGTCACCGCT
AAGGGAAGGCGTTTTCGGGAGGAAGGGGGATTTGTTGGGCGTGCTGTCCG
ACCGTACAAACAGCGGGCGCGTGGGCTCGCTGTGTGAAAAGCGGAGACGA
AAAAATCAGGTACACAGACGCGGGGGGCTTAGAAGCGGGCGAGGACGGGC
CTGGAGGGGGGGGCAGGCACTAGACTTGCGTTCGGCATGTACTTTAAGTT
CGTCCAGTGACCACCACGCATGTCTGGGGCGATACCACAAGGAGAAAGTA
AACGGGGAGGGGTGGAGAACGCCGAGTGAATTTTGTTTTACGAAAGCCCA
GCTGAAGTTTACATTGCGGTGTCCGCTTGTGCTGCTTTTATGGCCCGTTT
GCCGCTCTTGTGCTGCAGTTTGTGTCGTTTCCCCTGTCTGTTAGGTTCTT
ACATCGTTTATGTGTTGTGTTAGATATGCCAATGCGTCACGGTGGAGATA
GGCCAGCATCGTTTGTCCTTGATGGCGGCAGGTTGCAATGATATTGTTGA
AGGTGGTATTTTGCACGCTACACTACGTCTTCCTGCTGTTGTATTTTGCT
TGTGACTGCCACAGATATCTCCTTCACTGACTCAAAAACAAGGAAACACA
ATGGAATGGTAACGCAGAGCAGGAGCAAATACCATCAACACGGAAGAGCA
CCTCCAGTTCGGTGAACGGACGGGCTGTTGCATACATTGTATTGTACGAA
TATATGCCCAACCTGTCCCCCCCCCCCGCGCTTTGTACCCCACATGATAC
AGGAGAAAGAGAACGCCATTGCTCTCAACAGCAACGCGCAAGACCGATGG
GCGCACCAGGACAACAACCGCCACACCATCCAGAGCCCGTGGGGCCGCGA
GATTAGGGAAGCCATCCGCTACGACAAAAGTCTTCCGGGCATCAAATCTC
CCCGTCATCCCGGCGCGTCACCCGAATCAAAGGCGATGGCTGTGCTAAGT
AGCAAGAAGGACTGCGTGAACGGGGACGGCCACATTGACTACCACGGCCT
CCTGTCTACGTCCAAGCTTGGAGATAGAGCGTCCCCCGTAGGAGCACAGC
GGGGGCTACAACTACTTGATAACGGAGTTCGAGCGGTTGACGGTGCTACA
ATGGCAATGCGGAAGAAACGAATGCTTGAGAGGGATGCGGAAGAGCAGAA
GCAGGTGGGTGTTGCTTCCGTGTAACTTTATATTGTGCGTGGTATTGTTG
GGTTAGTGTTACGTGTTTTTTATATATCCTGTCAATTGTGCCAGCTTCTT
GAAGGTACGTGGTCTAAAGCAGCGACATCAGTGTCCTTTTTGCTGTTTTT
TTTGTGCTTGGGGTTTCGTCTTCCACGGCTCGCCGATCACCCAGAAGGCC
AAGCATATATCAACGCGAGGATGCGCGTTGGGGTTGGGAGGCTTCTCTCT
CTCGCCTGCAGAGGTTGTATCGGCATGTCGAAGAATTTCGCCGTTTGGCG
TATTTCCATTTTAATGTATCACACGAGAATGTTGTTTTGGCGTGGACAGT
CCGGTCCCTGTTGACATATTGATGGGCTGGGCTGTAGGCTCACCTTCTCG
TGGGTGTACGTGTTTACTTTAGAGGCGGTCGAGACGCCGCCCTCCCTCTA
AAAGATGAGATCCCCGCCACCTTTGGACACGTACCTCGGACGATAGACTA
TGTATATTCACGTGCTTAGCATTGTCCCCGAGCACTGAGATCGCAGCTTT
TCAAAACCCTTCACTCATAAGGGGTACGAGAATGCCAAGACCGAGGATTA
TGGCATACTTTGAGGGGGTGGCATCGGGGATCTATATAACATGCGCCAGG
ATCTACGGTCTCGCGGTCGGGAAGAGCAGGATTTTCATGTGTTTTTCTCT
GATTTTCTGTCCAAAAAGACGCAAAAAAAAAAGAATAGCCGTCACCAAGC
GCCAGGCTTTCATGTGATTTTTCTCTTATTTTTTCAACAACACACCACGC
CACCACGCAGCGTGTTGTCCATCAAATCAACGCACACGCCGCCATCGTTA
TGCCCAACAACGGCATCTCAGAGCTCGCGTTACCCTTTTCTTCGGCCGCG
GCCAACCTCCAGATCTTTGTACCATGTCACGTGACAGCGATCGACCTTTC
GGGGGTTCTATTCTACCACAAAGAAAGTTCTATCTCTGTAACATGAAAAA
CTGTTTTCATAGCCCCCTTGGCCTGATATTGAGGCCCTGCCACACTCACC
CCCTTCGCATTATATTGACGCCCCTCATGCTTGCCATCACACGCACTTCG
TTGGCAGGCTATTGTTGCCCTCAAACCCCTCCTGCCACAGTCGCGACCCT
GCCGGGTGGTTCGCCTACCGGCCGGCGTCTTTTTATATATGAATACTCCA
TTTTAACTGAGAATACGTCAGCCGTGATGCTCCAAATTGGGTCGGGAGCC
AGGGTACCATCGCCAACTTCACTGGAACTACGTACGATAGGGGGCTTTCA
AAAAAAAAAAAAAAGAGAGCCTTAAAAAAAGCGGAACTTGTGGAAATTGT
GTGGGGGTAAAGCTTTTTATTTTTACCCATCCCGCCGGAGAATTAATAAA
AAAAAAAAAAGGTACTGTGTATTTGTTTCATCACACCAGCACGCACACTC
TTGTACTGCAATACAAGGCTCTATCTATCATTTGCGGATGCTAATCGTAA
GAGTTCCGCTTCGTTTTGATTTTTGTCGTGGACAGATCGAGGCGGCGATG
GCGGCGTCACAAGAGGAGGCTTCTTTTTGCCAAGAGACGCAGCAAGAGAC
GCAGCTCGCTCGAGCGAGCCAGTTAAGCCCGGTCGGCGTCAGCGGGGAGG
CGGTTGGTGATGGGGACGACGATTTGCAGCAGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:368612..372144-

>mRNA_D-herbacea_F_contig102.347.1 ID=mRNA_D-herbacea_F_contig102.347.1|Name=mRNA_D-herbacea_F_contig102.347.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1554bp|location=Sequence derived from alignment at D-herbacea_F_contig102:368612..372144- (Desmarestia herbacea DmunF female)
TCCGGCGAGGGTAACGGTGGGCGTGGCCCGGGCGGAATGAAGCGTCGCCG
CAGCGAAGACGGAGATAATTGTCAGAACGGGGGAGAGTCCGGCGAGGGTA
ACGGTGGGCGTGGCCCGGGCGGAATGAAGCGTCGCCGCAGCGAAGACGGA
GATAATTGTCAGAACGGGGGAGAGAATCACGACCCATTCAGATTCCCGTC
ACCGCTAAGGGAAGGCGTTTTCGGGAGGAAGGGGGATTTGTTGGGCGTGC
TGTCCGACCGTACAAACAGCGGGCGCGTGGGCTCGCTGTGTGAAAAGCGG
AGACGAAAAAATCAGAATCACGACCCATTCAGATTCCCGTCACCGCTAAG
GGAAGGCGTTTTCGGGAGGAAGGGGGATTTGTTGGGCGTGCTGTCCGACC
GTACAAACAGCGGGCGCGTGGGCTCGCTGTGTGAAAAGCGGAGACGAAAA
AATCAGGAGAAAGAGAACGCCATTGCTCTCAACAGCAACGCGCAAGACCG
ATGGGCGCACCAGGACAACAACCGCCACACCATCCAGAGCCCGTGGGGCC
GCGAGATTAGGGAAGCCATCCGCTACGACAAAAGTCTTCCGGGCATCAAA
TCTCCCCGTCATCCCGGCGCGTCACCCGAATCAAAGGCGATGGCTGTGCT
AAGTAGCAAGAAGGACTGCGTGAACGGGGACGGCCACATTGACTACCACG
GCCTCCTGTCTACGTCCAAGCTTGGAGATAGAGCGTCCCCCGTAGGAGCA
CAGCGGGGGCTACAACTACTTGATAACGGAGTTCGAGCGGTTGACGGTGC
TACAATGGCAATGCGGAAGAAACGAATGCTTGAGAGGGATGCGGAAGAGC
AGAAGCAGGAGAAAGAGAACGCCATTGCTCTCAACAGCAACGCGCAAGAC
CGATGGGCGCACCAGGACAACAACCGCCACACCATCCAGAGCCCGTGGGG
CCGCGAGATTAGGGAAGCCATCCGCTACGACAAAAGTCTTCCGGGCATCA
AATCTCCCCGTCATCCCGGCGCGTCACCCGAATCAAAGGCGATGGCTGTG
CTAAGTAGCAAGAAGGACTGCGTGAACGGGGACGGCCACATTGACTACCA
CGGCCTCCTGTCTACGTCCAAGCTTGGAGATAGAGCGTCCCCCGTAGGAG
CACAGCGGGGGCTACAACTACTTGATAACGGAGTTCGAGCGGTTGACGGT
GCTACAATGGCAATGCGGAAGAAACGAATGCTTGAGAGGGATGCGGAAGA
GCAGAAGCAGATCGAGGCGGCGATGGCGGCGTCACAAGAGGAGGCTTCTT
TTTGCCAAGAGACGCAGCAAGAGACGCAGCTCGCTCGAGCGAGCCAGTTA
AGCCCGGTCGGCGTCAGCGGGGAGGCGGTTGGTGATGGGGACGACGATTT
GCAGCAGATCGAGGCGGCGATGGCGGCGTCACAAGAGGAGGCTTCTTTTT
GCCAAGAGACGCAGCAAGAGACGCAGCTCGCTCGAGCGAGCCAGTTAAGC
CCGGTCGGCGTCAGCGGGGAGGCGGTTGGTGATGGGGACGACGATTTGCA
GCAG
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