mRNA_D-herbacea_F_contig102.346.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.346.1
Unique NamemRNA_D-herbacea_F_contig102.346.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: D8LKT4_ECTSI (DUF202 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKT4_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.250e-34
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
            FRGELL  ER+ A LAN+RTWLAW+RT+  V+ +AL L+SL+  M S  +D     LGV FV CTL   +T WLRY RVK VL WT SQV+  FG F +K+FT  L  + VL +P+Y
Sbjct:  149 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSATMDSTAMALGVAFVACTLFTYMTGWLRYTRVKEVLTWTGSQVKGRFGRFGLKYFTWFLGASLVLTVPVY 265          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: F0YI70_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI70_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 5.300e-21
Identity = 49/118 (41.53%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 VFRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
            VFR +L+  E I+A LAN+RTWLAW+RTS   +S+A  LL+L G     +L  + F LG GF+V    A +T WLRYAR++ VL+ T  +V   F    ++H   L+ + F+ +   Y
Sbjct:   87 VFRKQLIKFENIQAHLANERTWLAWVRTSLSALSVAFSLLTLVGDSRESWLAVVLFLLGSGFIVSVFTAFLTGWLRYARIRDVLMLTKREVPAHFHRIGVRHQARLMGLLFIFLTATY 204          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2FKJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKJ2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.070e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
            FRG++L  ER++A LAN+RTWLAW+RT+   ++IA  LL+LS    S     + F +G   V   L   VT WLRY RVK VL+ T S++ + FG F + H
Sbjct:   91 FRGQVLKFERVQAHLANERTWLAWVRTALSALTIAFSLLTLSDDASSASQLAL-FVMGSCMVANVLFTFVTGWLRYVRVKDVLMLTRSEMSENFGRFGLSH 190          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2WVC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVC3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.600e-18
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLI 342
            FRG++L  ER++A LAN+RTWLAW+RT+   +SI+  LL+LS      +L    F +G   VV  L   +T WLRY RVK VL+    ++ D FG F + H    L+   V I
Sbjct:  115 FRGQVLKFERVQAHLANERTWLAWVRTALAALSISFTLLTLSDDATKDWLALFLFVVGCLMVVNVLFTFITGWLRYVRVKDVLMLRKQEMSDEFGRFGLSHHARFLSALLVAI 227          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2GM95_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM95_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.180e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
            FRG++L  ER++A LAN+RTWLAW+RT+   +SIA  LL+LS      +L    F +G   V   L+  VT WLRY RVK VL+     +   FG   + H
Sbjct:   67 FRGQVLKFERVQAHLANERTWLAWVRTALSALSIAFSLLTLSDESTKQWLKVTLFVVGSLMVANVLMTFVTGWLRYVRVKDVLMLDKQDMSANFGRLGLSH 167          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2Y0E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.860e-15
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAF 333
            FRGELL  ER+ A LAN+RT+LAW+RT+  V+S A  + SL+          + F  G  +VV  L    T W+RY++V+ +L   AS+V+  FG F + H    LA  F
Sbjct:  122 FRGELLKFERVNAHLANERTFLAWVRTALSVLSSAFSIDSLTEDFSDGAFKVMVFIFGCLYVVGVLFTYTTGWVRYSQVRAILGLPASKVKAQFGRFGLSHVAKFLAFLF 231          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S3K4A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.400e-13
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
            FR +L+  E I+A LAN+RT+LAW+RT+   +SI+  LL+L       +L    + LG  FV       +T WLR+AR++ +L+   +QV   F    + H
Sbjct:   82 FRRQLIKFENIQAHLANERTFLAWIRTALASLSISFSLLALVADASKNWLAACLYALGAAFVFSVFTTFLTGWLRFARIRDILMLAQNQVPTDFHRIGLSH 182          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S3YD22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD22_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 8.290e-13
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAV 327
            F+GELL  ER+ A LAN+RTWLAW+RT+  V+S A   L L+    S       F LG  ++   LL   T WLRYA+V+ +L    S ++  F  F + H    LAV
Sbjct:  120 FQGELLKFERVNAHLANERTWLAWVRTALAVLSSAFTFLGLTEDFAS-GTQIFVFVLGGFYIGNVLLTYGTGWLRYAQVREILGLPGSMIKPKFNRFGLSHQARYLAV 226          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2WHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHB1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.110e-13
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSL----SGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
            F+G+ + LER+ + LAN+RTWLAW+R    ++S A  L  L    SG +  V    + +GL +G++V   L +V  W R+ R K +L  ++S V+D FG   +    TLL   F+L +  Y
Sbjct:  150 FQGQFVKLERVLSHLANERTWLAWLRAGLTLLSTAFTLWQLYDAVSGKIHPVLRKAL-YGLALGYLVIIPLTVVVGWFRFERTKHILNLSSSLVRDYFGNIGVAVQATLLGAIFLLTVGCY 269          
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2G4H1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4H1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.090e-9
Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTL 318
            F+ ++L  +RI A LAN+RTWLAW+RT+F ++S  L L + +    S       F +G   +V      +T W+RY +VK +L      +    G   +K+ T L
Sbjct:   58 FQKQMLKFDRINAHLANERTWLAWIRTTFSLLSCGLTLQTYANDSSSGTWHWWLFAVGCATIVSMDFTYMTGWIRYGKVKEILQQNKEVLGPKMGRLKLKYQTFL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LKT4_ECTSI4.250e-3453.85DUF202 domain-containing protein n=2 Tax=Ectocarpu... [more]
F0YI70_AURAN5.300e-2141.53Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A7S2FKJ2_9STRA9.070e-1945.54Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WVC3_9STRA1.600e-1842.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GM95_9STRA9.180e-1843.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2Y0E1_9STRA2.860e-1540.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3K4A5_9STRA3.400e-1336.63Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S3YD22_HETAK8.290e-1341.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WHB1_9STRA9.110e-1336.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G4H1_9STRA2.090e-933.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:341559..341915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue3.2e-27
Seed eggNOG ortholog2880.D8LKT4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Domain of unknown function (DUF202)
EggNOG OGs2E55D@1,2SBZQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927432.890589-CDS-D-herbacea_F_contig102:341558..3419151622927432.890589-CDS-D-herbacea_F_contig102:341558..341915Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 341559..341915 +
1690790167.654337-CDS-D-herbacea_F_contig102:341558..3419151690790167.654337-CDS-D-herbacea_F_contig102:341558..341915Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 341559..341915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.346.1prot_D-herbacea_F_contig102.346.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 341559..341915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.346.1

>prot_D-herbacea_F_contig102.346.1 ID=prot_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=119bp
VFRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVY
LDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDI
KHFTTLLAVAFVLIIPIYI
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mRNA from alignment at D-herbacea_F_contig102:341559..341915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.346.1 ID=mRNA_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=357bp|location=Sequence derived from alignment at D-herbacea_F_contig102:341559..341915+ (Desmarestia herbacea DmunF female)
GTTTTCCGAGGGGAGCTGCTGACGCTTGAGCGAATCGAGGCCCAACTGGC GAACGATCGAACCTGGCTGGCGTGGATGAGGACCTCGTTTGACGTAATCT CAATAGCGTTGGGTCTCCTGTCGCTCTCGGGCGCCATGGATTCCGTGTAT CTGGATGGGATAACGTTTGGGCTGGGAGTTGGCTTCGTGGTGTGCACGCT CTTAGCCATTGTTACGGCATGGTTGCGTTATGCCCGCGTCAAGGTGGTTT TGCTGTGGACGGCTAGTCAGGTCCAGGACACGTTCGGCATCTTTGACATA AAACATTTCACGACGCTATTGGCGGTTGCCTTCGTTCTGATCATACCGAT CTATATC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:341559..341915+

>mRNA_D-herbacea_F_contig102.346.1 ID=mRNA_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=714bp|location=Sequence derived from alignment at D-herbacea_F_contig102:341559..341915+ (Desmarestia herbacea DmunF female)
GTTTTCCGAGGGGAGCTGCTGACGCTTGAGCGAATCGAGGCCCAACTGGC
GAACGATCGAACCTGGCTGGCGTGGATGAGGACCTCGTTTGACGTAATCT
CAATAGCGTTGGGTCTCCTGTCGCTCTCGGGCGCCATGGATTCCGTGTAT
CTGGATGGGATAACGTTTGGGCTGGGAGTTGGCTTCGTGGTGTGCACGCT
CTTAGCCATTGTTACGGCATGGTTGCGTTATGCCCGCGTCAAGGTGGTTT
TGCTGTGGACGGCTAGTCAGGTCCAGGACACGTTCGGCATCTTTGACATA
AAACATTTCACGACGCTATTGGCGGTTGCCTTCGTTCTGATCATACCGAT
CTATATCGTTTTCCGAGGGGAGCTGCTGACGCTTGAGCGAATCGAGGCCC
AACTGGCGAACGATCGAACCTGGCTGGCGTGGATGAGGACCTCGTTTGAC
GTAATCTCAATAGCGTTGGGTCTCCTGTCGCTCTCGGGCGCCATGGATTC
CGTGTATCTGGATGGGATAACGTTTGGGCTGGGAGTTGGCTTCGTGGTGT
GCACGCTCTTAGCCATTGTTACGGCATGGTTGCGTTATGCCCGCGTCAAG
GTGGTTTTGCTGTGGACGGCTAGTCAGGTCCAGGACACGTTCGGCATCTT
TGACATAAAACATTTCACGACGCTATTGGCGGTTGCCTTCGTTCTGATCA
TACCGATCTATATC
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