mRNA_D-herbacea_F_contig102.346.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: D8LKT4_ECTSI (DUF202 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKT4_ECTSI) HSP 1 Score: 128 bits (321), Expect = 4.250e-34 Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
FRGELL ER+ A LAN+RTWLAW+RT+ V+ +AL L+SL+ M S +D LGV FV CTL +T WLRY RVK VL WT SQV+ FG F +K+FT L + VL +P+Y
Sbjct: 149 FRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSATMDSTAMALGVAFVACTLFTYMTGWLRYTRVKEVLTWTGSQVKGRFGRFGLKYFTWFLGASLVLTVPVY 265
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: F0YI70_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI70_AURAN) HSP 1 Score: 92.8 bits (229), Expect = 5.300e-21 Identity = 49/118 (41.53%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 1 VFRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
VFR +L+ E I+A LAN+RTWLAW+RTS +S+A LL+L G +L + F LG GF+V A +T WLRYAR++ VL+ T +V F ++H L+ + F+ + Y
Sbjct: 87 VFRKQLIKFENIQAHLANERTWLAWVRTSLSALSVAFSLLTLVGDSRESWLAVVLFLLGSGFIVSVFTAFLTGWLRYARIRDVLMLTKREVPAHFHRIGVRHQARLMGLLFIFLTATY 204
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2FKJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKJ2_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 9.070e-19 Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
FRG++L ER++A LAN+RTWLAW+RT+ ++IA LL+LS S + F +G V L VT WLRY RVK VL+ T S++ + FG F + H
Sbjct: 91 FRGQVLKFERVQAHLANERTWLAWVRTALSALTIAFSLLTLSDDASSASQLAL-FVMGSCMVANVLFTFVTGWLRYVRVKDVLMLTRSEMSENFGRFGLSH 190
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2WVC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVC3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.600e-18 Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLI 342
FRG++L ER++A LAN+RTWLAW+RT+ +SI+ LL+LS +L F +G VV L +T WLRY RVK VL+ ++ D FG F + H L+ V I
Sbjct: 115 FRGQVLKFERVQAHLANERTWLAWVRTALAALSISFTLLTLSDDATKDWLALFLFVVGCLMVVNVLFTFITGWLRYVRVKDVLMLRKQEMSDEFGRFGLSHHARFLSALLVAI 227
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2GM95_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM95_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 9.180e-18 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
FRG++L ER++A LAN+RTWLAW+RT+ +SIA LL+LS +L F +G V L+ VT WLRY RVK VL+ + FG + H
Sbjct: 67 FRGQVLKFERVQAHLANERTWLAWVRTALSALSIAFSLLTLSDESTKQWLKVTLFVVGSLMVANVLMTFVTGWLRYVRVKDVLMLDKQDMSANFGRLGLSH 167
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2Y0E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E1_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.860e-15 Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAF 333
FRGELL ER+ A LAN+RT+LAW+RT+ V+S A + SL+ + F G +VV L T W+RY++V+ +L AS+V+ FG F + H LA F
Sbjct: 122 FRGELLKFERVNAHLANERTFLAWVRTALSVLSSAFSIDSLTEDFSDGAFKVMVFIFGCLYVVGVLFTYTTGWVRYSQVRAILGLPASKVKAQFGRFGLSHVAKFLAFLF 231
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S3K4A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A5_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-13 Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKH 306
FR +L+ E I+A LAN+RT+LAW+RT+ +SI+ LL+L +L + LG FV +T WLR+AR++ +L+ +QV F + H
Sbjct: 82 FRRQLIKFENIQAHLANERTFLAWIRTALASLSISFSLLALVADASKNWLAACLYALGAAFVFSVFTTFLTGWLRFARIRDILMLAQNQVPTDFHRIGLSH 182
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S3YD22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD22_HETAK) HSP 1 Score: 72.0 bits (175), Expect = 8.290e-13 Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAV 327
F+GELL ER+ A LAN+RTWLAW+RT+ V+S A L L+ S F LG ++ LL T WLRYA+V+ +L S ++ F F + H LAV
Sbjct: 120 FQGELLKFERVNAHLANERTWLAWVRTALAVLSSAFTFLGLTEDFAS-GTQIFVFVLGGFYIGNVLLTYGTGWLRYAQVREILGLPGSMIKPKFNRFGLSHQARYLAV 226
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2WHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHB1_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 9.110e-13 Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSL----SGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTLLAVAFVLIIPIY 354
F+G+ + LER+ + LAN+RTWLAW+R ++S A L L SG + V + +GL +G++V L +V W R+ R K +L ++S V+D FG + TLL F+L + Y
Sbjct: 150 FQGQFVKLERVLSHLANERTWLAWLRAGLTLLSTAFTLWQLYDAVSGKIHPVLRKAL-YGLALGYLVIIPLTVVVGWFRFERTKHILNLSSSLVRDYFGNIGVAVQATLLGAIFLLTVGCY 269
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Match: A0A7S2G4H1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4H1_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.090e-9 Identity = 35/105 (33.33%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 4 FRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYLDGITFGLGVGFVVCTLLAIVTAWLRYARVKVVLLWTASQVQDTFGIFDIKHFTTL 318
F+ ++L +RI A LAN+RTWLAW+RT+F ++S L L + + S F +G +V +T W+RY +VK +L + G +K+ T L
Sbjct: 58 FQKQMLKFDRINAHLANERTWLAWIRTTFSLLSCGLTLQTYANDSSSGTWHWWLFAVGCATIVSMDFTYMTGWIRYGKVKEILQQNKEVLGPKMGRLKLKYQTFL 162 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig102.346.1 >prot_D-herbacea_F_contig102.346.1 ID=prot_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=119bp VFRGELLTLERIEAQLANDRTWLAWMRTSFDVISIALGLLSLSGAMDSVYback to top mRNA from alignment at D-herbacea_F_contig102:341559..341915+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig102.346.1 ID=mRNA_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=357bp|location=Sequence derived from alignment at D-herbacea_F_contig102:341559..341915+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig102:341559..341915+ >mRNA_D-herbacea_F_contig102.346.1 ID=mRNA_D-herbacea_F_contig102.346.1|Name=mRNA_D-herbacea_F_contig102.346.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=714bp|location=Sequence derived from alignment at D-herbacea_F_contig102:341559..341915+ (Desmarestia herbacea DmunF female)back to top |