mRNA_D-herbacea_F_contig102.339.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig102.339.1
Unique NamemRNA_D-herbacea_F_contig102.339.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig102.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig102contigD-herbacea_F_contig102:184873..185421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.7365603-UTR-D-herbacea_F_contig102:184872..1850941622927430.7365603-UTR-D-herbacea_F_contig102:184872..185094Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 184873..185094 +
1690790166.3620713-UTR-D-herbacea_F_contig102:184872..1850941690790166.3620713-UTR-D-herbacea_F_contig102:184872..185094Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig102 184873..185094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927430.7532501-CDS-D-herbacea_F_contig102:185094..1854211622927430.7532501-CDS-D-herbacea_F_contig102:185094..185421Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 185095..185421 +
1690790166.3714375-CDS-D-herbacea_F_contig102:185094..1854211690790166.3714375-CDS-D-herbacea_F_contig102:185094..185421Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig102 185095..185421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig102.339.1prot_D-herbacea_F_contig102.339.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig102 185095..185421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig102.339.1

>prot_D-herbacea_F_contig102.339.1 ID=prot_D-herbacea_F_contig102.339.1|Name=mRNA_D-herbacea_F_contig102.339.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=109bp
MQASIPLHAKTQDACVPMPPLTRHIAKVGHKGIVIVGHSSTAPGYSFTIV
RPTHPVMNSHTGTLTKKRESSYPSDPLPALPLQQVLPTSEIHALQNKRAA
LLPPTDHIC
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mRNA from alignment at D-herbacea_F_contig102:184873..185421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig102.339.1 ID=mRNA_D-herbacea_F_contig102.339.1|Name=mRNA_D-herbacea_F_contig102.339.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=549bp|location=Sequence derived from alignment at D-herbacea_F_contig102:184873..185421+ (Desmarestia herbacea DmunF female)
ATCCATGATGATCACAAAACGTTGAAGAAAAAAAAGCACAAAGTGCTGTC
AATGTAAATCGTTAAAATCGTAAATTTATACATAAAGTAGTTTCAGCGTC
CCAGGGGTGCACCGCACCGTCAGAGGAGCCTCCTCACACCACTCCTTTGT
CGCAACGAGTAAACGATCTTCATCACTACTACAGGTAGTAGGTGCGCACC
CCCTGCCGTATGCCTTAAAAAAATGCAAGCATCCATTCCTTTACACGCCA
AGACGCAGGATGCATGCGTACCGATGCCACCACTTACACGCCACATAGCA
AAGGTCGGACACAAAGGTATCGTGATAGTAGGTCACTCGTCCACCGCGCC
CGGTTACTCCTTCACCATCGTACGTCCCACCCACCCAGTCATGAACTCAC
ACACCGGCACGTTAACAAAAAAACGCGAATCATCGTATCCAAGCGACCCC
CTTCCGGCCCTTCCTCTCCAACAAGTGCTGCCTACGAGCGAAATTCACGC
TCTTCAAAACAAAAGAGCAGCCCTTCTTCCCCCAACCGATCACATATGT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig102:184873..185421+

>mRNA_D-herbacea_F_contig102.339.1 ID=mRNA_D-herbacea_F_contig102.339.1|Name=mRNA_D-herbacea_F_contig102.339.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=654bp|location=Sequence derived from alignment at D-herbacea_F_contig102:184873..185421+ (Desmarestia herbacea DmunF female)
ATGCAAGCATCCATTCCTTTACACGCCAAGACGCAGGATGCATGCGTACC
GATGCCACCACTTACACGCCACATAGCAAAGGTCGGACACAAAGGTATCG
TGATAGTAGGTCACTCGTCCACCGCGCCCGGTTACTCCTTCACCATCGTA
CGTCCCACCCACCCAGTCATGAACTCACACACCGGCACGTTAACAAAAAA
ACGCGAATCATCGTATCCAAGCGACCCCCTTCCGGCCCTTCCTCTCCAAC
AAGTGCTGCCTACGAGCGAAATTCACGCTCTTCAAAACAAAAGAGCAGCC
CTTCTTCCCCCAACCGATCACATATGTATGCAAGCATCCATTCCTTTACA
CGCCAAGACGCAGGATGCATGCGTACCGATGCCACCACTTACACGCCACA
TAGCAAAGGTCGGACACAAAGGTATCGTGATAGTAGGTCACTCGTCCACC
GCGCCCGGTTACTCCTTCACCATCGTACGTCCCACCCACCCAGTCATGAA
CTCACACACCGGCACGTTAACAAAAAAACGCGAATCATCGTATCCAAGCG
ACCCCCTTCCGGCCCTTCCTCTCCAACAAGTGCTGCCTACGAGCGAAATT
CACGCTCTTCAAAACAAAAGAGCAGCCCTTCTTCCCCCAACCGATCACAT
ATGT
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