mRNA_D-herbacea_F_contig1014.326.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1014.326.1
Unique NamemRNA_D-herbacea_F_contig1014.326.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.230e-52
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSRFE+A S MTT  GT +Y+APEVL R YDKACDLWSIGVITYILL+GYPPFYGD+  EIFAS+R+G F+FPSPEWD++S +AKDFI  LL+ +P+ R+TA QAL+H W
Sbjct:  183 KIIDFGLSRFEEANSAMTTRVGTPYYIAPEVLLRSYDKACDLWSIGVITYILLSGYPPFYGDTDAEIFASVRRGEFDFPSPEWDSVSADAKDFICSLLRMDPTERLTAPQALDHPW 298
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A6H5JZZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.120e-50
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:   34 DAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            + ++ MTT  GT +Y+APEVLSRKYDKACDLWSIGVITYILLAGYPPFYG+S  EIFAS+R GYF+FPSPEWDNIS EAKDFI QLLQK+P+ARM+A+Q++ H W
Sbjct:  195 EIKTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDNISTEAKDFITQLLQKDPAARMSATQSINHGW 299
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A835ZG53_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG53_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.900e-48
Identity = 80/116 (68.97%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSRFED  + MTT  GT +Y+APEVL +KYD ACDLWSIGVITYILL GYPPFYGD+  EIF +I++G F F SPEWD+IS+EAKD I++LL+K+   R+TASQAL H W
Sbjct:  188 KIIDFGLSRFEDQATHMTTRVGTPYYIAPEVLEKKYDSACDLWSIGVITYILLCGYPPFYGDNDVEIFKAIQRGTFRFLSPEWDSISVEAKDLIQRLLEKDCRRRLTASQALVHPW 303
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A812UKM4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UKM4_SYMMI)

HSP 1 Score: 166 bits (419), Expect = 9.610e-48
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSR++D    M+T  GT +Y+APEVL+RKYDK CDLWSIGV+TY+LL GYPPFYGD+  EIFAS+++G F+FPSP+WD+IS +AK FIR  L+ + S R TA +ALEH W
Sbjct:   63 KIIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTAREALEHPW 178
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A7S2VWQ7_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWQ7_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.620e-47
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSP--MTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSR ED      M T  GT +Y+APEVL+++YDK+CD+WSIGVITYILL GYPPFYGD+  EIFAS+R   +++PSPEWD+IS +AKDFI  LL+K+P AR+TAS AL+HSW
Sbjct:  209 KIIDFGLSRHEDTSPTHMMKTKVGTPYYVAPEVLNKEYDKSCDMWSIGVITYILLCGYPPFYGDNDHEIFASVRAAQYDYPSPEWDDISAKAKDFIDHLLKKDPKARLTASNALDHSW 326
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: W7T8G8_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8G8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.880e-47
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSRFED Q  MTT  GT +Y+APEVL+R YDK+CDLWSIGVI YILL GYPPFYGD+  +IFAS+R+  F FPSPEWD+IS  AKD IR+LL K+P  R +A+ AL H W
Sbjct:  258 KIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAEFTFPSPEWDDISPSAKDLIRKLLSKDPRKRPSAAAALNHEW 373
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 166 bits (419), Expect = 2.910e-47
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSR++D    M+T  GT +Y+APEVL+RKYDK CDLWSIGV+TY+LL GYPPFYGD+  EIFAS+++G F+FPSP+WD+IS +AK FIR  L+ + S R TA +ALEH W
Sbjct:  149 KIIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTAREALEHPW 264
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A7S0FLZ8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FLZ8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.280e-46
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDA-QSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSR +DA +  M T  GT +Y+APEVL+R+Y K+CD+WSIGVITYILL GYPPFYGDS  +IF  +R G F+FPSP+WD IS  AK+FI  LL+K+PSAR+TA++AL+H W
Sbjct:   39 KIIDFGLSRHDDANRGVMKTKVGTPYYVAPEVLNREYTKSCDMWSIGVITYILLCGYPPFYGDSDNQIFEHVRTGRFDFPSPDWDGISAAAKNFICSLLRKDPSARLTAAEALKHPW 155
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A7S2JSJ9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSJ9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.360e-46
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQ-SPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            KIIDFGLSR +D     M T  GT +Y+APEVL+R Y  ACD+WSIGVITYILL GYPPFYGDS  EIF S+R G +++PSPEWD IS  AKDFI +LLQKNP  RMTASQA++H W
Sbjct:  251 KIIDFGLSRHDDENFGVMKTKVGTPYYVAPEVLNRHYTNACDMWSIGVITYILLCGYPPFYGDSDSEIFRSVRAGAYDYPSPEWDTISKTAKDFIDKLLQKNPKDRMTASQAMKHPW 367
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BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Match: A0A662YIG1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YIG1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.510e-46
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 1 
Query:    1 KIIDFGLSRFEDAQSP--MTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQKNPSARMTASQALEHSW 348
            K+IDFGLSR +D  S   MTT  GT +Y+APEVL R YDK+CDLWSIGVITYILL GYPPFYGD+ PEIFAS+R G ++F SPEW N+S EAKD I +LL  + S R+TA + L H W
Sbjct:   38 KVIDFGLSRMDDGLSAGVMTTRVGTPYYIAPEVLGRHYDKSCDLWSIGVITYILLCGYPPFYGDTDPEIFASVRAGRYDFDSPEWTNVSSEAKDLISRLLLVDASKRLTAEEVLRHPW 155
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1014.326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG63_9STRA1.230e-5271.55Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A6H5JZZ8_9PHAE3.120e-5075.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG53_9STRA3.900e-4868.97Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A812UKM4_SYMMI9.610e-4864.66Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A7S2VWQ7_9STRA1.620e-4766.10Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
W7T8G8_9STRA1.880e-4768.10Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]
A0A812RCN9_SYMMI2.910e-4764.66Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A7S0FLZ8_9STRA1.280e-4664.96Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2JSJ9_9STRA2.360e-4667.52Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A662YIG1_9STRA4.510e-4664.41Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1014contigD-herbacea_F_contig1014:22655..23002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue5.2e-38
Seed eggNOG ortholog653948.CCA23445
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927429.7743442-CDS-D-herbacea_F_contig1014:22654..230021622927429.7743442-CDS-D-herbacea_F_contig1014:22654..23002Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1014 22655..23002 -
1690790165.7334716-CDS-D-herbacea_F_contig1014:22654..230021690790165.7334716-CDS-D-herbacea_F_contig1014:22654..23002Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1014 22655..23002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1014.326.1prot_D-herbacea_F_contig1014.326.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1014 22655..23002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1014.326.1

>prot_D-herbacea_F_contig1014.326.1 ID=prot_D-herbacea_F_contig1014.326.1|Name=mRNA_D-herbacea_F_contig1014.326.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=116bp
KIIDFGLSRFEDAQSPMTTCAGTAFYMAPEVLSRKYDKACDLWSIGVITY
ILLAGYPPFYGDSTPEIFASIRQGYFEFPSPEWDNISMEAKDFIRQLLQK
NPSARMTASQALEHSW
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mRNA from alignment at D-herbacea_F_contig1014:22655..23002-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1014.326.1 ID=mRNA_D-herbacea_F_contig1014.326.1|Name=mRNA_D-herbacea_F_contig1014.326.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=348bp|location=Sequence derived from alignment at D-herbacea_F_contig1014:22655..23002- (Desmarestia herbacea DmunF female)
AAGATCATCGACTTCGGGCTCTCCCGCTTCGAAGACGCACAGTCCCCGAT
GACGACCTGCGCTGGGACAGCATTCTACATGGCGCCCGAGGTCCTCTCTC
GCAAGTACGACAAAGCCTGCGACCTGTGGTCCATTGGAGTGATTACGTAC
ATCCTCCTTGCAGGGTACCCACCCTTTTACGGCGACTCTACCCCGGAGAT
TTTTGCCTCCATCCGACAGGGATACTTTGAATTCCCCTCCCCCGAGTGGG
ACAACATCTCTATGGAGGCGAAGGACTTCATCAGGCAGCTCCTTCAGAAG
AACCCTTCGGCGCGGATGACCGCGAGCCAGGCGCTCGAACACTCTTGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1014:22655..23002-

>mRNA_D-herbacea_F_contig1014.326.1 ID=mRNA_D-herbacea_F_contig1014.326.1|Name=mRNA_D-herbacea_F_contig1014.326.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=696bp|location=Sequence derived from alignment at D-herbacea_F_contig1014:22655..23002- (Desmarestia herbacea DmunF female)
AAGATCATCGACTTCGGGCTCTCCCGCTTCGAAGACGCACAGTCCCCGAT
GACGACCTGCGCTGGGACAGCATTCTACATGGCGCCCGAGGTCCTCTCTC
GCAAGTACGACAAAGCCTGCGACCTGTGGTCCATTGGAGTGATTACGTAC
ATCCTCCTTGCAGGGTACCCACCCTTTTACGGCGACTCTACCCCGGAGAT
TTTTGCCTCCATCCGACAGGGATACTTTGAATTCCCCTCCCCCGAGTGGG
ACAACATCTCTATGGAGGCGAAGGACTTCATCAGGCAGCTCCTTCAGAAG
AACCCTTCGGCGCGGATGACCGCGAGCCAGGCGCTCGAACACTCTTGGAA
GATCATCGACTTCGGGCTCTCCCGCTTCGAAGACGCACAGTCCCCGATGA
CGACCTGCGCTGGGACAGCATTCTACATGGCGCCCGAGGTCCTCTCTCGC
AAGTACGACAAAGCCTGCGACCTGTGGTCCATTGGAGTGATTACGTACAT
CCTCCTTGCAGGGTACCCACCCTTTTACGGCGACTCTACCCCGGAGATTT
TTGCCTCCATCCGACAGGGATACTTTGAATTCCCCTCCCCCGAGTGGGAC
AACATCTCTATGGAGGCGAAGGACTTCATCAGGCAGCTCCTTCAGAAGAA
CCCTTCGGCGCGGATGACCGCGAGCCAGGCGCTCGAACACTCTTGG
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