mRNA_D-herbacea_F_contig100.262.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.262.1
Unique NamemRNA_D-herbacea_F_contig100.262.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: D7FI11_ECTSI (Aurora kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI11_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.400e-26
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKHCGERTATAAAASREAGSSKRKGVP 227
            YRRISRVD+RWP  +++SD+AKDL+TKLL+KEPQKRLPLD+VA HPWIR+HCG+RT++   ++  AGS KRK VP
Sbjct:  341 YRRISRVDIRWPSALNISDEAKDLVTKLLRKEPQKRLPLDEVASHPWIRRHCGDRTSSVGGSA--AGSFKRKAVP 413
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A6A4VGS4_AMPAM (Aurora kinase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VGS4_AMPAM)

HSP 1 Score: 74.3 bits (181), Expect = 6.240e-13
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKHCGERTATAAAASREAGSS 209
            Y+RISRVDL +P HV  S+ AKDL+ +LL+K+P KRL LD+V+ HPWI KH  +  A A  A++ +GSS
Sbjct:  271 YQRISRVDLAFPSHV--SEPAKDLVRRLLRKDPAKRLSLDEVSNHPWIVKHVKKHPAAAGGAAKPSGSS 337
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: M7NSS4_PNEMU (Aurora kinase n=4 Tax=Pneumocystis TaxID=4753 RepID=M7NSS4_PNEMU)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKH 155
            Y+RI++VDL+ P HV  S +AKDLITKLLQ  P+KRL LD+V LHPWI+KH
Sbjct:  353 YKRIAKVDLKIPDHV--SSEAKDLITKLLQHNPEKRLALDQVPLHPWIQKH 401
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A1S3HPP6_LINUN (Aurora kinase n=4 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HPP6_LINUN)

HSP 1 Score: 70.5 bits (171), Expect = 1.450e-11
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKH 155
            YRRIS+V+LR+P HV  SD A+DLI+KLL+ +PQKRLPL++V  HPWIR++
Sbjct:  269 YRRISKVELRFPSHV--SDGARDLISKLLRHDPQKRLPLNEVLTHPWIREN 317
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A835YI59_9STRA (Aurora kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI59_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-11
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWI 146
            +RRISRVDL +P HV  S+DA+DLIT+LLQKEP  RLPL +V LHPWI
Sbjct:  257 WRRISRVDLHFPPHV--SEDARDLITRLLQKEPAARLPLPQVPLHPWI 302
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A7S1XXJ4_9STRA (Aurora kinase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXJ4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-11
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKH--VDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKHCG 161
            YRRI RVDLRWP    V +SD AKDLITKLL K+P +R+ L  V  HPWI   CG
Sbjct:   67 YRRIQRVDLRWPPAHIVSISDAAKDLITKLLVKDPAQRMALVDVPAHPWIVDMCG 121
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: R1CTH3_EMIHU (Aurora kinase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CTH3_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-11
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKHCGE 164
            Y++ISRVD+++P+HV  S  A+DL+TKLL KEP +RL L +V  HPWI+ +CGE
Sbjct:   37 YKKISRVDMQFPEHV--SPLARDLMTKLLVKEPSQRLALGEVQNHPWIKANCGE 88
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A8H6HDZ3_9AGAR (Aurora kinase n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6HDZ3_9AGAR)

HSP 1 Score: 70.1 bits (170), Expect = 2.640e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKH 155
            YRRI++VDL+WPK  ++S + KDLITKLL+ +PQ R+PL     HPWI KH
Sbjct:  352 YRRIAKVDLKWPKDRELSPEVKDLITKLLRHDPQARIPLTDAIRHPWILKH 402
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BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A1Y2FVZ6_PROLT (Aurora kinase n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FVZ6_PROLT)

HSP 1 Score: 70.1 bits (170), Expect = 2.640e-11
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKH 155
            Y+RI++VDLR P HV  S +AKDLIT+LLQ  P++RL LD++ LHPWIRKH
Sbjct:  353 YKRIAKVDLRIPDHV--SAEAKDLITRLLQYNPERRLALDQIQLHPWIRKH 401
[Close]
BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Match: A0A6V1L2H2_HETAK (Aurora kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1L2H2_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 3.110e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:    3 YRRISRVDLRWPKHVDVSDDAKDLITKLLQKEPQKRLPLDKVALHPWIRKHCGE 164
            YRRI RVDLR+P    +S+DAKDLI+KLLQKEP  RLPL ++A HPWI ++ G+
Sbjct:  243 YRRIQRVDLRFPP--GMSEDAKDLISKLLQKEPANRLPLAEIAGHPWIIRNAGQ 294
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI11_ECTSI6.400e-2668.00Aurora kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6A4VGS4_AMPAM6.240e-1355.07Aurora kinase n=1 Tax=Amphibalanus amphitrite TaxI... [more]
M7NSS4_PNEMU1.040e-1166.67Aurora kinase n=4 Tax=Pneumocystis TaxID=4753 RepI... [more]
A0A1S3HPP6_LINUN1.450e-1164.71Aurora kinase n=4 Tax=Lingula unguis TaxID=7574 Re... [more]
A0A835YI59_9STRA1.940e-1170.83Aurora kinase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1XXJ4_9STRA2.400e-1161.82Aurora kinase n=1 Tax=Phaeomonas parva TaxID=12443... [more]
R1CTH3_EMIHU2.600e-1157.41Aurora kinase n=1 Tax=Emiliania huxleyi TaxID=2903... [more]
A0A8H6HDZ3_9AGAR2.640e-1158.82Aurora kinase n=2 Tax=Tulosesus angulatus TaxID=98... [more]
A0A1Y2FVZ6_PROLT2.640e-1164.71Aurora kinase n=1 Tax=Protomyces lactucae-debilis ... [more]
A0A6V1L2H2_HETAK3.110e-1162.96Aurora kinase n=1 Tax=Heterosigma akashiwo TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:882601..884494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.262.1prot_D-herbacea_F_contig100.262.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 882601..884494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.0286806-CDS-D-herbacea_F_contig100:882600..8826471622927411.0286806-CDS-D-herbacea_F_contig100:882600..882647Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 882601..882647 +
1690790155.8285189-CDS-D-herbacea_F_contig100:882600..8826471690790155.8285189-CDS-D-herbacea_F_contig100:882600..882647Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 882601..882647 +
1622927411.0443413-CDS-D-herbacea_F_contig100:883477..8835551622927411.0443413-CDS-D-herbacea_F_contig100:883477..883555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 883478..883555 +
1690790155.8381102-CDS-D-herbacea_F_contig100:883477..8835551690790155.8381102-CDS-D-herbacea_F_contig100:883477..883555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 883478..883555 +
1622927411.0580401-CDS-D-herbacea_F_contig100:884184..8844941622927411.0580401-CDS-D-herbacea_F_contig100:884184..884494Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 884185..884494 +
1690790155.847493-CDS-D-herbacea_F_contig100:884184..8844941690790155.847493-CDS-D-herbacea_F_contig100:884184..884494Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 884185..884494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.262.1

>prot_D-herbacea_F_contig100.262.1 ID=prot_D-herbacea_F_contig100.262.1|Name=mRNA_D-herbacea_F_contig100.262.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=145bp
RTVASRESIFAGRNTWMLATTRRILSRSSSRRSRRSVCLSIRWLYTLGLG
STAGSARQLQPRLAGRLEVPREKAFPLKLYCYQNLFVIYFFSCFCRRVFF
APPRTMQALSKCWRTVGRHCSIHALKYSKSPPQPPLPPPPLPCA*
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mRNA from alignment at D-herbacea_F_contig100:882601..884494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.262.1 ID=mRNA_D-herbacea_F_contig100.262.1|Name=mRNA_D-herbacea_F_contig100.262.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1894bp|location=Sequence derived from alignment at D-herbacea_F_contig100:882601..884494+ (Desmarestia herbacea DmunF female)
CGTACCGTCGCATCTCGCGAGTCGATCTTCGCTGGCCGAAACACGTGGTG
CGTGTACTGTTTGTTTTATATCCTCCTGTACTACTGAATAATGCCCTTGT
CGATAATACTATAGAAATAGTGTGCGCTATATACGGCATCATGTAATGGT
AGAAGATGAAAGTTTTTTATTTTATGTGTGTGTGCGATCAAACTGATGTT
AGAACGCATGCGAGACGGTGAAGTATGGTATGTCGCCAGTAGTGGTCAAG
TGGGATTGTTAACCGTTGTCCTACCATACAAGTCAGCGCCGACTTTTGTA
GGACGAAGGGATAACTGTCATATATAGCTTGTTGTAGAGTGCGGCATTTG
GTTATTGGAGCAATGTGGGGGTCCGTGTACGTTTCGGTGGAGGCCTTGTC
CTTTTTTTTTTTCTCTTGCCTTACTACCGCCCTGGACAGTTTTATGCTTG
GCATATTTTTGGTGCTCTAGTCGGGGAGGAGGGGGGGGGTCGTGTAAATA
TTGAGCCGACGGAGTGTTTTTGGCCAGATGGCCAGGTGGACCAACAAATG
GGATTCGTGAAGTCGACAAAACGTGGACTTTCGTGAGTTGTACGTTTGTG
CTGTGCTGTGCTTGTTTTGTACACGGGTTACGTCCCTTTCCGCCCTTTTT
CGAGGGTTTTGGCTGCACTTTTGTGTTTTTGTCGAAATACAACGGATTGT
GGAGATGTATATCTGACGCGTGGAATTGACCTTTCTTCATTATGCTAATG
TGAGAATCAGTGTGATTTGGTGTGATGCGATTTGATGCCGCCTTCTGCTG
ACCCTTTTTTGTTAGTTTTTTGCTGCGCACAAACGCCCAAAAATGAACGT
CGGATTTTTCTCGCGGTTTTTTCACAGGATGTTAGCGACGACGCGAAGGA
TCTTATCACGAAGCTCCTCCAGAAGGAGCCGCAGAAGCGTCTGCCTCTCG
ATAAGGTGCGCAAGAAATACACTCATCGTGCGTTGTGTTATACCCCCATT
CGACCTGTTTACAAACGTACGATAAAAAACGCCAAAAAAAGGAATTTATC
ATACTGATTTCAAGGCATTCACTTAGTTTTCACATCCGAGAGAGAGTTAG
CGACGGCCCTTTTGTGCTCCCATTGGCCTATTGGAGTATCATCAGGCGCT
GGAAAAGTTGGTTCCGTGTATGTATGTGTCGTGGGGAGCGCACAAAGGAG
TACAGTATGTAATATGAATATTTAGTATTGTCATGGACGTCGCCTATAAT
AGCGTGCACCGTCATCGCTTTGCGTGCCTCTTGTTATATATAGCGTACAG
ATTAGAACTTTGCACGTACCAAGGAAGCATGTTACGGTTGTCGTGGACGT
ATTGTTACTATTATTTTTTTGGTTGTGGTGTGAGTACTTGTTTCTCTCAC
CTTATCTCCAGTTTCGGCTCCCGAGTGTTTCGGTGCTGTGACCACAGACC
CATTTTTTGTTTTACCCGCAGGCCAAACATCCCTTGACCGTAGGAGCATT
CTATTCTATTGTATTTAATCGATCTATCTATTTACTCCCATGGTGCTGGA
CATTCTTGCGGCGAAAAAAAAAAAAAAAAAACAGGTGGCTTTACACCCTT
GGATTAGGAAGCACTGCGGGGAGCGCACGGCAACTGCAGCCGCGGCTAGC
AGGGAGGCTGGAAGTTCCAAGAGAAAAGGCGTTCCCGCTTAAACTGTACT
GTTACCAGAACCTTTTTGTTATATATTTTTTTTCTTGTTTCTGTCGACGC
GTCTTTTTTGCTCCGCCGAGAACGATGCAGGCGTTGTCAAAGTGTTGGCG
CACAGTTGGCAGGCATTGCAGCATCCACGCTTTAAAATACAGCAAATCGC
CACCCCAGCCCCCGCTACCCCCCCCCCCCCTTCCCTGCGCGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:882601..884494+

>mRNA_D-herbacea_F_contig100.262.1 ID=mRNA_D-herbacea_F_contig100.262.1|Name=mRNA_D-herbacea_F_contig100.262.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=870bp|location=Sequence derived from alignment at D-herbacea_F_contig100:882601..884494+ (Desmarestia herbacea DmunF female)
CGTACCGTCGCATCTCGCGAGTCGATCTTCGCTGGCCGAAACACGTGCGT
ACCGTCGCATCTCGCGAGTCGATCTTCGCTGGCCGAAACACGTGGATGTT
AGCGACGACGCGAAGGATCTTATCACGAAGCTCCTCCAGAAGGAGCCGCA
GAAGCGTCTGCCTCTCGATAAGGATGTTAGCGACGACGCGAAGGATCTTA
TCACGAAGCTCCTCCAGAAGGAGCCGCAGAAGCGTCTGCCTCTCGATAAG
GTGGCTTTACACCCTTGGATTAGGAAGCACTGCGGGGAGCGCACGGCAAC
TGCAGCCGCGGCTAGCAGGGAGGCTGGAAGTTCCAAGAGAAAAGGCGTTC
CCGCTTAAACTGTACTGTTACCAGAACCTTTTTGTTATATATTTTTTTTC
TTGTTTCTGTCGACGCGTCTTTTTTGCTCCGCCGAGAACGATGCAGGCGT
TGTCAAAGTGTTGGCGCACAGTTGGCAGGCATTGCAGCATCCACGCTTTA
AAATACAGCAAATCGCCACCCCAGCCCCCGCTACCCCCCCCCCCCCTTCC
CTGCGCGTGAGTGGCTTTACACCCTTGGATTAGGAAGCACTGCGGGGAGC
GCACGGCAACTGCAGCCGCGGCTAGCAGGGAGGCTGGAAGTTCCAAGAGA
AAAGGCGTTCCCGCTTAAACTGTACTGTTACCAGAACCTTTTTGTTATAT
ATTTTTTTTCTTGTTTCTGTCGACGCGTCTTTTTTGCTCCGCCGAGAACG
ATGCAGGCGTTGTCAAAGTGTTGGCGCACAGTTGGCAGGCATTGCAGCAT
CCACGCTTTAAAATACAGCAAATCGCCACCCCAGCCCCCGCTACCCCCCC
CCCCCCTTCCCTGCGCGTGA
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