mRNA_D-herbacea_F_contig100.260.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.260.1
Unique NamemRNA_D-herbacea_F_contig100.260.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:875645..876203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927410.9651184-CDS-D-herbacea_F_contig100:875644..8758851622927410.9651184-CDS-D-herbacea_F_contig100:875644..875885Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 875645..875885 +
1690790155.8105872-CDS-D-herbacea_F_contig100:875644..8758851690790155.8105872-CDS-D-herbacea_F_contig100:875644..875885Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 875645..875885 +
1622927410.9774027-CDS-D-herbacea_F_contig100:876125..8762021622927410.9774027-CDS-D-herbacea_F_contig100:876125..876202Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 876126..876202 +
1690790155.8199148-CDS-D-herbacea_F_contig100:876125..8762021690790155.8199148-CDS-D-herbacea_F_contig100:876125..876202Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 876126..876202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.260.1prot_D-herbacea_F_contig100.260.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 875645..876202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.260.1

>prot_D-herbacea_F_contig100.260.1 ID=prot_D-herbacea_F_contig100.260.1|Name=mRNA_D-herbacea_F_contig100.260.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=106bp
VTLRRDAALPLQQQRQLLVLRFCCLKGTVRMHRRSMKGEARGGAAVASPS
TAGRNPFQSVLSKPKGAVAPAPGTSRGANKAENAEANTKRVHPQPGEAAP
KQPRLK
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mRNA from alignment at D-herbacea_F_contig100:875645..876203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.260.1 ID=mRNA_D-herbacea_F_contig100.260.1|Name=mRNA_D-herbacea_F_contig100.260.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=559bp|location=Sequence derived from alignment at D-herbacea_F_contig100:875645..876203+ (Desmarestia herbacea DmunF female)
GTGACTTTGCGTCGTGACGCCGCACTACCCTTACAACAGCAACGGCAACT
ACTTGTGTTGCGTTTTTGCTGCTTGAAGGGCACAGTACGTATGCATCGAA
GGAGCATGAAGGGCGAAGCTCGAGGCGGCGCTGCTGTAGCCTCGCCCTCG
ACAGCAGGACGAAATCCGTTCCAGTCTGTGCTCAGCAAGCCGAAAGGTGC
GGTGGCACCGGCACCAGGAACAAGCCGCGGCGCAAACAAAGGTACGTCTC
TTTGCCAAGTAAGAGAAAGCCAAGCGAGGGAAGACGTCGAAGCATCAATC
TCACTGTTGTCTCCGTCGATGTTCTCGTTATGGTCGTTGCACTACTGTTT
CGATGAACGGCGATGAATACAGCTGCGAATGGTCAGTTGTATTTTGTGTG
TGTGTGTCGTTGGTTGATTTTTTTTTTACTGTCTGGCCTCCTCGTTGCAC
GCTCTACATTTCGCGACCCTGTACACCCCAGCAGAGAACGCCGAGGCGAA
CACCAAGCGTGTTCATCCTCAGCCAGGAGAAGCAGCACCTAAGCAGCCGC
GACTCAAGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:875645..876203+

>mRNA_D-herbacea_F_contig100.260.1 ID=mRNA_D-herbacea_F_contig100.260.1|Name=mRNA_D-herbacea_F_contig100.260.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=636bp|location=Sequence derived from alignment at D-herbacea_F_contig100:875645..876203+ (Desmarestia herbacea DmunF female)
GTGACTTTGCGTCGTGACGCCGCACTACCCTTACAACAGCAACGGCAACT
ACTTGTGTTGCGTTTTTGCTGCTTGAAGGGCACAGTACGTATGCATCGAA
GGAGCATGAAGGGCGAAGCTCGAGGCGGCGCTGCTGTAGCCTCGCCCTCG
ACAGCAGGACGAAATCCGTTCCAGTCTGTGCTCAGCAAGCCGAAAGGTGC
GGTGGCACCGGCACCAGGAACAAGCCGCGGCGCAAACAAAGGTGACTTTG
CGTCGTGACGCCGCACTACCCTTACAACAGCAACGGCAACTACTTGTGTT
GCGTTTTTGCTGCTTGAAGGGCACAGTACGTATGCATCGAAGGAGCATGA
AGGGCGAAGCTCGAGGCGGCGCTGCTGTAGCCTCGCCCTCGACAGCAGGA
CGAAATCCGTTCCAGTCTGTGCTCAGCAAGCCGAAAGGTGCGGTGGCACC
GGCACCAGGAACAAGCCGCGGCGCAAACAAAGCAGAGAACGCCGAGGCGA
ACACCAAGCGTGTTCATCCTCAGCCAGGAGAAGCAGCACCTAAGCAGCCG
CGACTCAAGCAGAGAACGCCGAGGCGAACACCAAGCGTGTTCATCCTCAG
CCAGGAGAAGCAGCACCTAAGCAGCCGCGACTCAAG
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