mRNA_D-herbacea_F_contig100.251.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.251.1
Unique NamemRNA_D-herbacea_F_contig100.251.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:785350..787113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002330.1
Exons2
Model size1278
Cds size1278
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.5565174-CDS-D-herbacea_F_contig100:785349..7865101622927417.5565174-CDS-D-herbacea_F_contig100:785349..786510Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 785350..786510 +
1690790159.909369-CDS-D-herbacea_F_contig100:785349..7865101690790159.909369-CDS-D-herbacea_F_contig100:785349..786510Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 785350..786510 +
1622927417.5654736-CDS-D-herbacea_F_contig100:786996..7871131622927417.5654736-CDS-D-herbacea_F_contig100:786996..787113Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 786997..787113 +
1690790159.9207556-CDS-D-herbacea_F_contig100:786996..7871131690790159.9207556-CDS-D-herbacea_F_contig100:786996..787113Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 786997..787113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.251.1prot_D-herbacea_F_contig100.251.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 785350..787113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.251.1

>prot_D-herbacea_F_contig100.251.1 ID=prot_D-herbacea_F_contig100.251.1|Name=mRNA_D-herbacea_F_contig100.251.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=426bp
MTGSCYDAAEARYIRWLDEYRCDREAHAKARNAHPDTAALDAKLFQAYCA
FSGPSHVHAADREASARAATDLLLQGASADPKYFKDGELSGPNLGHIVDL
LESGNMEPPLLGLLKAFTACGASTVLNNRRYCGNGGEELPYFILRAILTG
EPWGFFSAAAATAQSASWRENNRMFRRACLRVLARMAFWSAECECAQRAP
HPLMVLLNTNRGGMRPVEIFEARHLASDAFNRECMLQVLHLMIFVYQNFP
WPRRQYLADVEHARSLHAASLAWGEQYSMRINLARRMTRVILFVPAFLHT
LLEQNLWHVLAAYHADRCYTHRCSTHHNSRRRHRLCVWGDHLCSRQHERN
LIQVLSNSRLISIWLCGKEGRCFLFELCRQRRRRVLQAVAAAAPCAFTAA
APDLLAFVHGPHVRGKKERLAAWLES
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mRNA from alignment at D-herbacea_F_contig100:785350..787113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.251.1 ID=mRNA_D-herbacea_F_contig100.251.1|Name=mRNA_D-herbacea_F_contig100.251.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1764bp|location=Sequence derived from alignment at D-herbacea_F_contig100:785350..787113+ (Desmarestia herbacea DmunF female)
ATGACAGGCAGCTGCTACGACGCAGCTGAGGCACGATACATACGGTGGCT
GGATGAGTATCGGTGCGACCGCGAGGCACATGCAAAGGCGCGCAACGCAC
ATCCCGACACGGCAGCCCTGGACGCTAAATTATTTCAAGCGTATTGCGCG
TTTTCGGGTCCCAGCCACGTACATGCAGCCGACCGTGAGGCCTCAGCGAG
AGCGGCCACCGACCTTCTCTTGCAAGGTGCGTCCGCTGATCCAAAATACT
TCAAGGACGGCGAACTCTCCGGTCCAAACTTGGGGCATATTGTAGACTTG
CTGGAGTCAGGGAATATGGAACCCCCGTTGTTGGGCTTATTGAAAGCGTT
TACGGCGTGCGGGGCTTCGACGGTGCTGAACAACCGGCGGTACTGCGGGA
ACGGGGGAGAGGAGTTGCCGTATTTCATACTGCGTGCGATTCTTACGGGC
GAACCGTGGGGATTCTTTTCGGCAGCAGCAGCAACAGCTCAGTCTGCATC
ATGGCGAGAAAATAATCGCATGTTTCGCCGTGCATGTCTTCGAGTGCTTG
CGAGGATGGCTTTTTGGAGTGCTGAATGCGAGTGCGCACAGCGTGCTCCT
CACCCGTTAATGGTGCTTCTTAATACCAACCGGGGAGGGATGCGCCCTGT
GGAGATATTTGAAGCTCGGCATCTCGCCTCGGACGCTTTCAATCGAGAAT
GCATGCTCCAAGTGTTGCACCTGATGATATTTGTGTATCAAAATTTCCCG
TGGCCACGCCGACAGTACCTGGCTGATGTCGAGCATGCACGCTCGTTGCA
TGCTGCTTCGTTGGCGTGGGGGGAGCAGTACAGCATGCGAATAAACCTTG
CGAGAAGAATGACGCGCGTTATATTGTTCGTGCCTGCTTTCTTGCACACA
CTTTTGGAACAAAACCTTTGGCATGTGCTTGCGGCGTACCATGCTGATAG
GTGTTACACGCATCGCTGCAGCACCCACCATAATAGTCGCAGGCGGCATC
GTTTGTGTGTTTGGGGCGATCATCTTTGTAGTCGACAGCACGAGAGGAAC
TTGATACAAGTGCTGAGCAATAGCCGCCTTATCTCCATCTGGTTATGTGG
CAAGGAAGGACGGTGTTTTTTGTTCGAGCTCTGCCGCCAGCGTCGTCGGC
GCGTATTGCAAGTGAGTCGTCCAGCGGCGTGGGGGGGGGGTCCAGGATAC
TAACTGCACGCACTTAAAGGGTCAGGTATGCGTGTATAATGATGTTCCCA
GTCAGCCTCGAAAAGTCAACGGGTCTCCTCAGGTTCAACTCGATATCTCA
ACCAACTCGCTTGCGCACCCGACGGTGCGCTATAATAATATAACATCTAC
AATACAACAGTTTAAGATCCCTCCGACAAAGAGCAAGCGACAATCGCTCG
AAAGAATGGTGGCTATAGTCTTGTTACAGTGCATTCATATTGGTGAAACA
CTATTATTACTTCGAAGAATATAATATTATTTATCGCGGGCGTAGGGGTG
CCATCAAGGCTGTCGCGAGAGCTCTGGAATATACCGCCGTCAGTGTACGT
TTCACCTCACTGTATAGAAAATCTAAACAACAATGCCCCATCTGTCCTCC
GATCCCGCGTGTGTTCCATCCCGCTGGGTGTTAACGCGCTACTTAAGGCG
GTTGCGGCCGCTGCACCGTGTGCGTTTACTGCCGCCGCACCAGATCTCTT
GGCGTTTGTGCATGGGCCTCATGTGCGAGGCAAGAAAGAGCGGTTGGCTG
CGTGGCTGGAGTCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:785350..787113+

>mRNA_D-herbacea_F_contig100.251.1 ID=mRNA_D-herbacea_F_contig100.251.1|Name=mRNA_D-herbacea_F_contig100.251.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2556bp|location=Sequence derived from alignment at D-herbacea_F_contig100:785350..787113+ (Desmarestia herbacea DmunF female)
ATGACAGGCAGCTGCTACGACGCAGCTGAGGCACGATACATACGGTGGCT
GGATGAGTATCGGTGCGACCGCGAGGCACATGCAAAGGCGCGCAACGCAC
ATCCCGACACGGCAGCCCTGGACGCTAAATTATTTCAAGCGTATTGCGCG
TTTTCGGGTCCCAGCCACGTACATGCAGCCGACCGTGAGGCCTCAGCGAG
AGCGGCCACCGACCTTCTCTTGCAAGGTGCGTCCGCTGATCCAAAATACT
TCAAGGACGGCGAACTCTCCGGTCCAAACTTGGGGCATATTGTAGACTTG
CTGGAGTCAGGGAATATGGAACCCCCGTTGTTGGGCTTATTGAAAGCGTT
TACGGCGTGCGGGGCTTCGACGGTGCTGAACAACCGGCGGTACTGCGGGA
ACGGGGGAGAGGAGTTGCCGTATTTCATACTGCGTGCGATTCTTACGGGC
GAACCGTGGGGATTCTTTTCGGCAGCAGCAGCAACAGCTCAGTCTGCATC
ATGGCGAGAAAATAATCGCATGTTTCGCCGTGCATGTCTTCGAGTGCTTG
CGAGGATGGCTTTTTGGAGTGCTGAATGCGAGTGCGCACAGCGTGCTCCT
CACCCGTTAATGGTGCTTCTTAATACCAACCGGGGAGGGATGCGCCCTGT
GGAGATATTTGAAGCTCGGCATCTCGCCTCGGACGCTTTCAATCGAGAAT
GCATGCTCCAAGTGTTGCACCTGATGATATTTGTGTATCAAAATTTCCCG
TGGCCACGCCGACAGTACCTGGCTGATGTCGAGCATGCACGCTCGTTGCA
TGCTGCTTCGTTGGCGTGGGGGGAGCAGTACAGCATGCGAATAAACCTTG
CGAGAAGAATGACGCGCGTTATATTGTTCGTGCCTGCTTTCTTGCACACA
CTTTTGGAACAAAACCTTTGGCATGTGCTTGCGGCGTACCATGCTGATAG
GTGTTACACGCATCGCTGCAGCACCCACCATAATAGTCGCAGGCGGCATC
GTTTGTGTGTTTGGGGCGATCATCTTTGTAGTCGACAGCACGAGAGGAAC
TTGATACAAGTGCTGAGCAATAGCCGCCTTATCTCCATCTGGTTATGTGG
CAAGGAAGGACGGTGTTTTTTGTTCGAGCTCTGCCGCCAGCGTCGTCGGC
GCGTATTGCAAATGACAGGCAGCTGCTACGACGCAGCTGAGGCACGATAC
ATACGGTGGCTGGATGAGTATCGGTGCGACCGCGAGGCACATGCAAAGGC
GCGCAACGCACATCCCGACACGGCAGCCCTGGACGCTAAATTATTTCAAG
CGTATTGCGCGTTTTCGGGTCCCAGCCACGTACATGCAGCCGACCGTGAG
GCCTCAGCGAGAGCGGCCACCGACCTTCTCTTGCAAGGTGCGTCCGCTGA
TCCAAAATACTTCAAGGACGGCGAACTCTCCGGTCCAAACTTGGGGCATA
TTGTAGACTTGCTGGAGTCAGGGAATATGGAACCCCCGTTGTTGGGCTTA
TTGAAAGCGTTTACGGCGTGCGGGGCTTCGACGGTGCTGAACAACCGGCG
GTACTGCGGGAACGGGGGAGAGGAGTTGCCGTATTTCATACTGCGTGCGA
TTCTTACGGGCGAACCGTGGGGATTCTTTTCGGCAGCAGCAGCAACAGCT
CAGTCTGCATCATGGCGAGAAAATAATCGCATGTTTCGCCGTGCATGTCT
TCGAGTGCTTGCGAGGATGGCTTTTTGGAGTGCTGAATGCGAGTGCGCAC
AGCGTGCTCCTCACCCGTTAATGGTGCTTCTTAATACCAACCGGGGAGGG
ATGCGCCCTGTGGAGATATTTGAAGCTCGGCATCTCGCCTCGGACGCTTT
CAATCGAGAATGCATGCTCCAAGTGTTGCACCTGATGATATTTGTGTATC
AAAATTTCCCGTGGCCACGCCGACAGTACCTGGCTGATGTCGAGCATGCA
CGCTCGTTGCATGCTGCTTCGTTGGCGTGGGGGGAGCAGTACAGCATGCG
AATAAACCTTGCGAGAAGAATGACGCGCGTTATATTGTTCGTGCCTGCTT
TCTTGCACACACTTTTGGAACAAAACCTTTGGCATGTGCTTGCGGCGTAC
CATGCTGATAGGTGTTACACGCATCGCTGCAGCACCCACCATAATAGTCG
CAGGCGGCATCGTTTGTGTGTTTGGGGCGATCATCTTTGTAGTCGACAGC
ACGAGAGGAACTTGATACAAGTGCTGAGCAATAGCCGCCTTATCTCCATC
TGGTTATGTGGCAAGGAAGGACGGTGTTTTTTGTTCGAGCTCTGCCGCCA
GCGTCGTCGGCGCGTATTGCAAGCGGTTGCGGCCGCTGCACCGTGTGCGT
TTACTGCCGCCGCACCAGATCTCTTGGCGTTTGTGCATGGGCCTCATGTG
CGAGGCAAGAAAGAGCGGTTGGCTGCGTGGCTGGAGTCTGCGGTTGCGGC
CGCTGCACCGTGTGCGTTTACTGCCGCCGCACCAGATCTCTTGGCGTTTG
TGCATGGGCCTCATGTGCGAGGCAAGAAAGAGCGGTTGGCTGCGTGGCTG
GAGTCT
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