mRNA_D-herbacea_F_contig100.250.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.250.1
Unique NamemRNA_D-herbacea_F_contig100.250.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:784415..784954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.250.1prot_D-herbacea_F_contig100.250.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 784419..784724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.291004-UTR-D-herbacea_F_contig100:784414..7844181622927411.291004-UTR-D-herbacea_F_contig100:784414..784418Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 784415..784418 +
1690790155.9450083-UTR-D-herbacea_F_contig100:784414..7844181690790155.9450083-UTR-D-herbacea_F_contig100:784414..784418Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 784415..784418 +
1622927411.316906-UTR-D-herbacea_F_contig100:784724..7849541622927411.316906-UTR-D-herbacea_F_contig100:784724..784954Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 784725..784954 +
1690790155.9616492-UTR-D-herbacea_F_contig100:784724..7849541690790155.9616492-UTR-D-herbacea_F_contig100:784724..784954Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 784725..784954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.3054073-CDS-D-herbacea_F_contig100:784418..7847241622927411.3054073-CDS-D-herbacea_F_contig100:784418..784724Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 784419..784724 +
1690790155.9537363-CDS-D-herbacea_F_contig100:784418..7847241690790155.9537363-CDS-D-herbacea_F_contig100:784418..784724Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 784419..784724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.250.1

>prot_D-herbacea_F_contig100.250.1 ID=prot_D-herbacea_F_contig100.250.1|Name=mRNA_D-herbacea_F_contig100.250.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=102bp
MSVRVPSLVSEDVASMPGSAAALPISTRPSSSWVSSSSIAVADTTPASPS
NTGIAPGVGTEPSSSVGDDTDGVAHLAMTSSFPSSSISPPSPSSRLFVAV
P*
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mRNA from alignment at D-herbacea_F_contig100:784415..784954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.250.1 ID=mRNA_D-herbacea_F_contig100.250.1|Name=mRNA_D-herbacea_F_contig100.250.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=540bp|location=Sequence derived from alignment at D-herbacea_F_contig100:784415..784954+ (Desmarestia herbacea DmunF female)
ATGCATGTCAGTGAGAGTGCCCTCACTGGTATCGGAAGACGTCGCATCGA
TGCCAGGATCAGCTGCTGCATTGCCCATCTCCACACGACCGTCTTCTTCT
TGGGTGAGCTCAAGTTCAATTGCAGTTGCAGACACAACACCAGCATCGCC
ATCGAACACAGGTATCGCACCCGGCGTCGGCACAGAACCATCGTCCTCCG
TCGGTGACGACACCGATGGTGTTGCCCATTTAGCCATGACTTCTTCCTTC
CCTTCCTCCTCCATCTCCCCCCCTTCCCCCAGCTCGCGTCTCTTCGTTGC
GGTGCCCTGAATAGGCGCCATCTCGGGTGCAATACTGGTCTCCCTATCAA
CAGAAAGGTCGCCAATGACGGCAGGCTCTCCCATGTTGCTGTCATTTTCT
TGCGCGCTGTTGGTTACTGCAGCTCTGACGCTGGACCCATTATGTGCCAT
GACAACAAACCCGACAACCACCAGTATCAATCCCCAACGACATTGCCTCC
TAGTGTTATTGACCTCTGCCCCCATCATGCCAAAGGTACA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:784415..784954+

>mRNA_D-herbacea_F_contig100.250.1 ID=mRNA_D-herbacea_F_contig100.250.1|Name=mRNA_D-herbacea_F_contig100.250.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=612bp|location=Sequence derived from alignment at D-herbacea_F_contig100:784415..784954+ (Desmarestia herbacea DmunF female)
ATGTCAGTGAGAGTGCCCTCACTGGTATCGGAAGACGTCGCATCGATGCC
AGGATCAGCTGCTGCATTGCCCATCTCCACACGACCGTCTTCTTCTTGGG
TGAGCTCAAGTTCAATTGCAGTTGCAGACACAACACCAGCATCGCCATCG
AACACAGGTATCGCACCCGGCGTCGGCACAGAACCATCGTCCTCCGTCGG
TGACGACACCGATGGTGTTGCCCATTTAGCCATGACTTCTTCCTTCCCTT
CCTCCTCCATCTCCCCCCCTTCCCCCAGCTCGCGTCTCTTCGTTGCGGTG
CCCTGAATGTCAGTGAGAGTGCCCTCACTGGTATCGGAAGACGTCGCATC
GATGCCAGGATCAGCTGCTGCATTGCCCATCTCCACACGACCGTCTTCTT
CTTGGGTGAGCTCAAGTTCAATTGCAGTTGCAGACACAACACCAGCATCG
CCATCGAACACAGGTATCGCACCCGGCGTCGGCACAGAACCATCGTCCTC
CGTCGGTGACGACACCGATGGTGTTGCCCATTTAGCCATGACTTCTTCCT
TCCCTTCCTCCTCCATCTCCCCCCCTTCCCCCAGCTCGCGTCTCTTCGTT
GCGGTGCCCTGA
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