mRNA_D-herbacea_F_contig100.249.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-herbacea_F_contig100.249.1
Unique Name	mRNA_D-herbacea_F_contig100.249.1
Type	mRNA
Organism	Desmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)

Homology

[Close]

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 8.340e-45
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 1

Query: 1012 GFGRSSPEELVQRVRDVEAELLRKLLAEEDANSLLDIWVERAREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRTCRLL 1284
            GF R SPE++ QRVRD+EAEL+RKLLAEEDA SLLDIWVER REYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGR CRLL
Sbjct:  457 GFPRGSPEDMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLL 547

[Close]

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 5.160e-44
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 1

Query: 1015 FGRSSPEELVQRVRDVEAELLRKLLAEEDANSLLDIWVERAREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRTCRLL 1284
            F R SPEE+ QRVRD+EAEL+RKLLAEEDA SLLDIWVER REYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGR CRLL
Sbjct:  622 FPRGSPEEMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLL 711

[Close]

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Match: A0A6H5JPF6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPF6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.720e-10
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1

Query: 1033 EELV---QRVRDVEAELLRKLLAEEDANSLLDIWVERAR----EYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRTCRL 1281
            EELV    R  D E    R+   E D ++  +  +ER      ++V T+  P TD ECD++W R RC+P+C+C  + RFGDY PGR+CRL
Sbjct:   62 EELVGVFHRTMDSEKRERRRRELERDFDTDDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRL 151

[Close]

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Match: A0A7S2S8F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-9
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1

Query: 1099 DANSLLDIWVERAREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRTCRLL 1284
            D  SL++++ +  R +++    P TD EC ++W   RCEP+C C  + + GDY+P R+CRL+
Sbjct:    1 DERSLMEVFGDATRHWLIQHLAPRTDRECHWSWRLARCEPRCLCTFQPKLGDYSPNRSCRLV 62

[Close]

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Match: A0A7S0CLR0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLR0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.520e-6
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 1

Query: 1015 FGRSSPEELVQRVRDVEAELLRKLLA---EEDANSLLDIWVERAREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGA-----RLRFGDYTPGRTC 1275
            F  S+P +   R+     +L+  +L    E+D  + LD + E ++  +    +P TDAECDF+W  LRCEP   CG         FGD+  GR+C
Sbjct:  114 FPSSAPRQSSPRLASRSNKLIYNVLNSLDEDDERTYLDTFGEVSKIIMTHHVIPETDAECDFDWRSLRCEPHDICGGGGCRFEYEFGDFHLGRSC 208

The following BLAST results are available for this feature:

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot

BLAST of mRNA_D-herbacea_F_contig100.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7FHY4_ECTSI	8.340e-45	89.01	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JIE4_9PHAE	5.160e-44	90.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPF6_9PHAE	4.720e-10	42.22	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2S8F9_9STRA	3.480e-9	38.71	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A7S0CLR0_9STRA	5.520e-6	34.74	Hypothetical protein n=2 Tax=Proboscia inermis Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-herbacea_F_contig100	contig	D-herbacea_F_contig100:781943..784381 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90	2022-09-19
OGS1.0 of Desmarestia herbacea DmunF female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	175.3
Seed ortholog evalue	6.3e-41
Seed eggNOG ortholog	2880.D7FHY4
Hectar predicted targeting category	other localisation
EggNOG OGs	2E73F@1,2SDR3@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-12_006360.1
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	1285
Cds size	1284
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927410.9096067-CDS-D-herbacea_F_contig100:781942..782105	1622927410.9096067-CDS-D-herbacea_F_contig100:781942..782105	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig100 781943..782105 -
1690790155.7873077-CDS-D-herbacea_F_contig100:781942..782105	1690790155.7873077-CDS-D-herbacea_F_contig100:781942..782105	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig100 781943..782105 -
1622927410.9237819-CDS-D-herbacea_F_contig100:783260..784381	1622927410.9237819-CDS-D-herbacea_F_contig100:783260..784381	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig100 783261..784381 -
1690790155.8017273-CDS-D-herbacea_F_contig100:783260..784381	1690790155.8017273-CDS-D-herbacea_F_contig100:783260..784381	Desmarestia herbacea DmunF female	CDS	D-herbacea_F_contig100 783261..784381 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-herbacea_F_contig100.249.1	prot_D-herbacea_F_contig100.249.1	Desmarestia herbacea DmunF female	polypeptide	D-herbacea_F_contig100 781943..784381 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-herbacea_F_contig100:781943..784381-
coding sequence from alignment at D-herbacea_F_contig100:781943..784381-

protein sequence of mRNA_D-herbacea_F_contig100.249.1

>prot_D-herbacea_F_contig100.249.1 ID=prot_D-herbacea_F_contig100.249.1|Name=mRNA_D-herbacea_F_contig100.249.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=428bp
SVSQDNRDEFDANDGFVAEENNDGSSSDRTHVSSSTAGGSDDADDVNTAA
ASEVTSTERSGGVGEEEEDDERGDEREDDNDRHQPERKQNQEDGEKATLE
RDTVSEESVRGVASLDGVAEQALAGGGDGADGGGIQAGNNADSDSDSDSD
SRNPGVDVDKESFRDAAATTADSVPATTAESSDTVDAAATASEGLLRPNG
VVEQGSNEAQATLNARFDALERDSTAANRDDNNNEDADGTDSGVDSRRAV
SGRPAAGGDRQQATPDGLSSDSDAGEGLTRSDNTRGRKQGGRLHTGRGVG
GESKGEVRENDGDRFGNGGGGDGDGSGATDDIIGHGGGFGRSSPEELVQR
VRDVEAELLRKLLAEEDANSLLDIWVERAREYVLTQTVPPTDAECDFNWS
RLRCEPKCTCGARLRFGDYTPGRTCRLL

mRNA from alignment at D-herbacea_F_contig100:781943..784381-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-herbacea_F_contig100.249.1 ID=mRNA_D-herbacea_F_contig100.249.1|Name=mRNA_D-herbacea_F_contig100.249.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2439bp|location=Sequence derived from alignment at D-herbacea_F_contig100:781943..784381- (Desmarestia herbacea DmunF female)
TCTGTCTCACAAGACAATCGCGACGAGTTCGATGCTAACGATGGTTTCGT
GGCGGAGGAGAACAACGATGGGAGCTCCTCAGACAGGACACACGTGTCAT
CATCGACTGCTGGGGGCAGCGATGACGCCGACGACGTCAACACAGCAGCC
GCCAGTGAGGTAACCTCAACTGAGAGGAGTGGGGGGGTGGGGGAGGAGGA
GGAGGACGACGAACGAGGGGACGAACGAGAGGACGACAACGACAGACACC
AACCGGAGCGAAAACAGAATCAAGAAGATGGCGAAAAGGCCACTCTAGAA
AGGGACACGGTAAGCGAAGAGTCTGTTCGAGGGGTAGCCTCGTTGGACGG
TGTCGCAGAACAAGCGCTTGCTGGAGGTGGCGATGGTGCAGATGGAGGCG
GTATCCAGGCTGGAAATAACGCCGATAGTGACAGCGACAGCGATAGTGAT
AGCAGGAATCCGGGCGTTGACGTTGACAAGGAATCTTTCCGCGATGCTGC
CGCTACCACCGCTGATAGTGTTCCCGCTACCACTGCTGAATCTAGTGATA
CTGTTGATGCTGCTGCCACTGCTTCAGAGGGGCTACTCCGGCCGAATGGG
GTCGTGGAGCAAGGCTCGAACGAGGCCCAAGCTACGTTGAACGCGCGATT
CGATGCTCTCGAAAGAGACAGCACCGCAGCCAATCGCGACGACAACAACA
ACGAGGATGCTGACGGGACGGACTCTGGTGTCGACTCTAGAAGAGCTGTC
TCAGGGAGACCAGCTGCTGGCGGTGACCGACAGCAAGCAACACCCGACGG
GCTCTCGTCAGACTCCGACGCAGGAGAGGGCTTGACAAGAAGTGACAACA
CTCGGGGGAGGAAGCAGGGTGGCAGACTACACACGGGGCGTGGGGTTGGT
GGCGAGAGCAAGGGAGAGGTGCGGGAAAACGACGGCGATAGGTTTGGCAA
CGGCGGCGGCGGTGACGGCGATGGTAGTGGTGCTACCGACGATATTATTG
GCCACGGTGGTGGCTTTGGTCGAAGTTCGCCAGAAGAGCTGGTTCAGCGT
GTTAGAGATGTGGAGGCGGAGCTGTTGCGGAAACTTCTGGCCGAGGAGGA
CGCGAATTCTTTGCTCGACATGTGAGACTACTACTGTAACGCGATCTGTT
CCGTGTTGTTTGTCGCTACCGGTAGCTGCTGGACTTGATGTACTACTACT
GTTATACTACAAGTACTGTCGCACTGTTGTTCAATGGATCCTTGATTATT
ATTTGGCGTCGCTGTTGCGTTTGGAATTTAGGAAATTGGAGAGGCATGGG
TTTTCATGCTTTTGACGTGCGCGCAATTGAATGGCCGTTTCGTGCTTTCA
CCATTGCTTTAATTGTTGACTCTACCCCGTCAGACTCGATAATGTAAAGT
TCGCCACATGGTTTCGAAGTACGGTAAAATCTAAGCGGAGAAAACACAAG
CAGGTAAAATACACAGCCGGGCGATTTTTCGTTTAGACCGAGGATCGTAG
TTTCTACTTTTTTTGTTTTACCCTTGCAATTCGTATCATCACTGCGCTCC
AATGGTTGAACTGGTGATTGAAACGCCATCAACTGGACTGGGGGTTCAAA
TCCTGGTAAGTTGTACCTGGTAATATTGTCTGTTGTTTTGCTTCCTACGC
GGAAAGCGCGAAAACTTGAGTAAGCAAAACCCGTTGAAATTCGGTGAGCT
GGGGGAGGGCTGAACCCCATGGGCGATAAATTCTTGAATTGACCAGGGAG
CTTGGGGGCGGGGGTGGGGGGGAGGGGCATGAGATCACGGCAGCCCAAGA
ATGCAGGGGGTTAGAAAGATGATGAAAATAAATATAACCAAAAACTCGTG
GTATTGTGCCTGTTGAATATATCATAGGACAAGTCCCACTCTCTGACTGG
CAAGTCGTTAATTCCGCTCTCACGCCTCCCACTTCCGTACAAGACCCAAT
TTCCTACGCCTGCCAAGTACAACCAGTAGGCGATGGTGGTGCGCATGTTT
TTATTTGATTCTGGCTGGTAATATAAGGACCGTTGGTAGTCTAGCTGTCG
TATCAATGCGTCGACATCATATTTTTTCGATGCAGTTTCTTTTACAATAC
AGGAAATGACCTAGCGCGCACGACAAGTACAGAAACCAGGACCATTTGTA
TCACCCACACCTTGCAATTGTTGAGCCAAAATGGAGCTCGATCGACTGTA
AATTACGTAGGTAGAGCACTCAGCATACCATGGTAACACGTAACCCTGCC
TTCGACCTGTATATGCCCCTATTCAGCTGGGTAGAAAGAGCGCGGGAATA
CGTTCTAACCCAGACTGTACCTCCGACTGATGCTGAGTGTGACTTCAACT
GGAGCCGTCTCCGATGCGAGCCCAAGTGCACCTGCGGCGCGCGCCTCCGC
TTCGGCGATTACACCCCCGGGCGCACCTGCCGCTTGCTC

Coding sequence (CDS) from alignment at D-herbacea_F_contig100:781943..784381-

>mRNA_D-herbacea_F_contig100.249.1 ID=mRNA_D-herbacea_F_contig100.249.1|Name=mRNA_D-herbacea_F_contig100.249.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2568bp|location=Sequence derived from alignment at D-herbacea_F_contig100:781943..784381- (Desmarestia herbacea DmunF female)
TCTGTCTCACAAGACAATCGCGACGAGTTCGATGCTAACGATGGTTTCGT
GGCGGAGGAGAACAACGATGGGAGCTCCTCAGACAGGACACACGTGTCAT
CATCGACTGCTGGGGGCAGCGATGACGCCGACGACGTCAACACAGCAGCC
GCCAGTGAGGTAACCTCAACTGAGAGGAGTGGGGGGGTGGGGGAGGAGGA
GGAGGACGACGAACGAGGGGACGAACGAGAGGACGACAACGACAGACACC
AACCGGAGCGAAAACAGAATCAAGAAGATGGCGAAAAGGCCACTCTAGAA
AGGGACACGGTAAGCGAAGAGTCTGTTCGAGGGGTAGCCTCGTTGGACGG
TGTCGCAGAACAAGCGCTTGCTGGAGGTGGCGATGGTGCAGATGGAGGCG
GTATCCAGGCTGGAAATAACGCCGATAGTGACAGCGACAGCGATAGTGAT
AGCAGGAATCCGGGCGTTGACGTTGACAAGGAATCTTTCCGCGATGCTGC
CGCTACCACCGCTGATAGTGTTCCCGCTACCACTGCTGAATCTAGTGATA
CTGTTGATGCTGCTGCCACTGCTTCAGAGGGGCTACTCCGGCCGAATGGG
GTCGTGGAGCAAGGCTCGAACGAGGCCCAAGCTACGTTGAACGCGCGATT
CGATGCTCTCGAAAGAGACAGCACCGCAGCCAATCGCGACGACAACAACA
ACGAGGATGCTGACGGGACGGACTCTGGTGTCGACTCTAGAAGAGCTGTC
TCAGGGAGACCAGCTGCTGGCGGTGACCGACAGCAAGCAACACCCGACGG
GCTCTCGTCAGACTCCGACGCAGGAGAGGGCTTGACAAGAAGTGACAACA
CTCGGGGGAGGAAGCAGGGTGGCAGACTACACACGGGGCGTGGGGTTGGT
GGCGAGAGCAAGGGAGAGGTGCGGGAAAACGACGGCGATAGGTTTGGCAA
CGGCGGCGGCGGTGACGGCGATGGTAGTGGTGCTACCGACGATATTATTG
GCCACGGTGGTGGCTTTGGTCGAAGTTCGCCAGAAGAGCTGGTTCAGCGT
GTTAGAGATGTGGAGGCGGAGCTGTTGCGGAAACTTCTGGCCGAGGAGGA
CGCGAATTCTTTGCTCGACATTCTGTCTCACAAGACAATCGCGACGAGTT
CGATGCTAACGATGGTTTCGTGGCGGAGGAGAACAACGATGGGAGCTCCT
CAGACAGGACACACGTGTCATCATCGACTGCTGGGGGCAGCGATGACGCC
GACGACGTCAACACAGCAGCCGCCAGTGAGGTAACCTCAACTGAGAGGAG
TGGGGGGGTGGGGGAGGAGGAGGAGGACGACGAACGAGGGGACGAACGAG
AGGACGACAACGACAGACACCAACCGGAGCGAAAACAGAATCAAGAAGAT
GGCGAAAAGGCCACTCTAGAAAGGGACACGGTAAGCGAAGAGTCTGTTCG
AGGGGTAGCCTCGTTGGACGGTGTCGCAGAACAAGCGCTTGCTGGAGGTG
GCGATGGTGCAGATGGAGGCGGTATCCAGGCTGGAAATAACGCCGATAGT
GACAGCGACAGCGATAGTGATAGCAGGAATCCGGGCGTTGACGTTGACAA
GGAATCTTTCCGCGATGCTGCCGCTACCACCGCTGATAGTGTTCCCGCTA
CCACTGCTGAATCTAGTGATACTGTTGATGCTGCTGCCACTGCTTCAGAG
GGGCTACTCCGGCCGAATGGGGTCGTGGAGCAAGGCTCGAACGAGGCCCA
AGCTACGTTGAACGCGCGATTCGATGCTCTCGAAAGAGACAGCACCGCAG
CCAATCGCGACGACAACAACAACGAGGATGCTGACGGGACGGACTCTGGT
GTCGACTCTAGAAGAGCTGTCTCAGGGAGACCAGCTGCTGGCGGTGACCG
ACAGCAAGCAACACCCGACGGGCTCTCGTCAGACTCCGACGCAGGAGAGG
GCTTGACAAGAAGTGACAACACTCGGGGGAGGAAGCAGGGTGGCAGACTA
CACACGGGGCGTGGGGTTGGTGGCGAGAGCAAGGGAGAGGTGCGGGAAAA
CGACGGCGATAGGTTTGGCAACGGCGGCGGCGGTGACGGCGATGGTAGTG
GTGCTACCGACGATATTATTGGCCACGGTGGTGGCTTTGGTCGAAGTTCG
CCAGAAGAGCTGGTTCAGCGTGTTAGAGATGTGGAGGCGGAGCTGTTGCG
GAAACTTCTGGCCGAGGAGGACGCGAATTCTTTGCTCGACATCTGGGTAG
AAAGAGCGCGGGAATACGTTCTAACCCAGACTGTACCTCCGACTGATGCT
GAGTGTGACTTCAACTGGAGCCGTCTCCGATGCGAGCCCAAGTGCACCTG
CGGCGCGCGCCTCCGCTTCGGCGATTACACCCCCGGGCGCACCTGCCGCT
TGCTCCTGGGTAGAAAGAGCGCGGGAATACGTTCTAACCCAGACTGTACC
TCCGACTGATGCTGAGTGTGACTTCAACTGGAGCCGTCTCCGATGCGAGC
CCAAGTGCACCTGCGGCGCGCGCCTCCGCTTCGGCGATTACACCCCCGGG
CGCACCTGCCGCTTGCTC