mRNA_D-herbacea_F_contig100.245.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.245.1
Unique NamemRNA_D-herbacea_F_contig100.245.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig100.245.1 vs. uniprot
Match: D7FHX7_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX7_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.030e-19
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:    5 SFQEMVNGAFKSQALAGIAGA-GGLSSGDVQNWVMQNYPEWNEEGSKMRSLAVGIEGVLAKDYVSSGPDRWTETS 226
            SF +M++ AF+S+ L+ +A A GGLSSGDVQNW+MQ YPEWN+EG +M++LAVGIE  L + +VS G DRW E S
Sbjct:  196 SFGDMISQAFRSRELSAVAAASGGLSSGDVQNWIMQAYPEWNKEGPRMKALAVGIEEALNESFVSRGGDRWAEDS 270
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BLAST of mRNA_D-herbacea_F_contig100.245.1 vs. uniprot
Match: A0A6H5JLB0_9PHAE (FHA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.080e-15
Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 2 
Query:    5 SFQEMVNGAFKSQALAGIAGA-GGLSSGDVQNWVMQNYPEWNEEGSKMRSLAVGIEGVLAKDYVSSG 202
            SF +MV  AF+S+ L+ +A A GGLSSGDVQNW+MQ YPEWN+EG +M++LAVGIE  L + +VS G
Sbjct:  205 SFGDMVCQAFRSRELSAVAAASGGLSSGDVQNWIMQAYPEWNKEGPRMKALAVGIEEALNESFVSRG 271
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX7_ECTSI3.030e-1960.00FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLB0_9PHAE2.080e-1561.19FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:756169..759799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FHX7
Preferred nameFOXK1
KEGG koko:K09404
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002252,GO:0002376,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0007154,GO:0007267,GO:0007275,GO:0007494,GO:0007495,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035295,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048518,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051607,GO:0051704,GO:0051707,GO:0055123,GO:0060255,GO:0065007,GO:0080090,GO:0098542,GO:0098586,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5025@1,KOG2294@2759
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-12_006270.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons3
Model size1208
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.245.1prot_D-herbacea_F_contig100.245.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 756185..759000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927416.9705155-UTR-D-herbacea_F_contig100:756168..7561841622927416.9705155-UTR-D-herbacea_F_contig100:756168..756184Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 756169..756184 +
1690790159.6296875-UTR-D-herbacea_F_contig100:756168..7561841690790159.6296875-UTR-D-herbacea_F_contig100:756168..756184Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 756169..756184 +
1622927417.111039-UTR-D-herbacea_F_contig100:759000..7597991622927417.111039-UTR-D-herbacea_F_contig100:759000..759799Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 759001..759799 +
1690790159.6829948-UTR-D-herbacea_F_contig100:759000..7597991690790159.6829948-UTR-D-herbacea_F_contig100:759000..759799Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 759001..759799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927417.0768454-CDS-D-herbacea_F_contig100:756184..7562791622927417.0768454-CDS-D-herbacea_F_contig100:756184..756279Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 756185..756279 +
1690790159.6508186-CDS-D-herbacea_F_contig100:756184..7562791690790159.6508186-CDS-D-herbacea_F_contig100:756184..756279Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 756185..756279 +
1622927417.0917456-CDS-D-herbacea_F_contig100:757961..7580561622927417.0917456-CDS-D-herbacea_F_contig100:757961..758056Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 757962..758056 +
1690790159.6630428-CDS-D-herbacea_F_contig100:757961..7580561690790159.6630428-CDS-D-herbacea_F_contig100:757961..758056Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 757962..758056 +
1622927417.101456-CDS-D-herbacea_F_contig100:758797..7590001622927417.101456-CDS-D-herbacea_F_contig100:758797..759000Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 758798..759000 +
1690790159.672392-CDS-D-herbacea_F_contig100:758797..7590001690790159.672392-CDS-D-herbacea_F_contig100:758797..759000Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 758798..759000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.245.1

>prot_D-herbacea_F_contig100.245.1 ID=prot_D-herbacea_F_contig100.245.1|Name=mRNA_D-herbacea_F_contig100.245.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=131bp
MVNGAFKSQALAGIAGAGGLSSGDVQNWVMQNYPEWNEEGSKMRSLAVGI
EGVLAKDYVSSGPDRWTETSLPPVAKRAKTSAVARPSSATATATATAQPM
VGVSSLAPAVPEAGNGGEEDGGGIDVGMDD*
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mRNA from alignment at D-herbacea_F_contig100:756169..759799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.245.1 ID=mRNA_D-herbacea_F_contig100.245.1|Name=mRNA_D-herbacea_F_contig100.245.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3631bp|location=Sequence derived from alignment at D-herbacea_F_contig100:756169..759799+ (Desmarestia herbacea DmunF female)
GGGTTCTTTCCAGGAGATGGTGAACGGGGCGTTCAAGAGCCAGGCGCTGG
CAGGCATCGCGGGTGCTGGGGGTCTATCGAGCGGGGATGTGCAGAACTGG
GTCATGCAGAAGTGAGTATAAAGTACGTAAATAGTGCGGGATACAATGCA
AATACTGTAGACTAGAGACTATTTAGAGGCTCATTTTGGCGGTGTCGACT
TGTAGTGTAGGCCTGTCGTGTAGTGCGGTCCAATAGTACCGATTGCGGTA
TGGTATGTTGTTTTCGTCTTGTGTCAGTGAGAGAGGGGGGGTGTACTCAT
TTCATGCATGGCCGTAGTCGTATGACCATAGACCCTAGCATCCCAACTAT
GCCGGGACGGAACACGTCGGGTTTTCACCGACCAGGCAGACATCGCTTGC
ACCAAGCGCGAAGCGCCGTGAGGTGTTCGGCGATTCGCATGAAGGGTGAG
CTGCATCCTACTAAGAACCACTTGTGAGGCGGACTTCGGCACCTTGTGCA
TACTTTCTTGCGTATGGATGACAGCTTCAAATGAACACTTTGTTTTCTGG
TGTGGTCACTTCCAGAGACAGCCATGGGTATATACTAGGTAACTGCCTCG
TGCGTGCCTTACCATAGATACTTCGTATATACTCTACGTGATATCATCCC
ACTTGCGCGGAGTTCAGGTTCTCCACCCCGCACAATATGATCTAACTCGA
CAAACAGCCATGATAACCGCCAAAAAAAAAAAAAAAAACGGTACCGTGGT
CGTCTAGCTCACGCAGCGAGTGGCGTGTTTTACACCGGTTGGGACGCCAA
CCGCAAGGGGCAGTGGAAGGGGAGGGGGTTGCCCTTTTGCACTGACAACG
AGTGTTTAGTGGTGTCGGCTAAATATACTGCCCCTCGCCTTTGTTTAATC
CCTTTTTTGTTATCGACGCAGTACAGTCGTACATTAGGTGATGATGCTGG
ACACTACTCGGCCCTTGTTCAATGATTTGGTTATATTTTTGGACGGGAGA
TGATCGTCCGCGGTAATTCCTGACCTTTAAGTTTGTAGTACTATTTTTCA
TTTGTGTTTTTGTCTCGTTGGTGGTTCGCAACCAAAAATACAAGCACGAA
AATCGAGACGGCATCGTTTTGGGCTACGTATTGAAGGCGACGTTTTTGTG
GGATGGCGATGATTTAGGTTTGTTGGTGGTTGTGATCGTTGAAACGTAGC
GGTTGGGTCTTCGCGCTTCGAACGGACGTCGGGCCCGCAATGTCTCACCC
CTCGGTGCAACAAACTATGATAGAACCGACACAAAGTCAGCGGTATGATG
CTGTAGATGAAAAAATAAAAGGGAAAGCCGTATTATGTAGAATGAACGTC
GTGCTATACTTGCTGTTTGGCGGGGACCCTGTCAAATTTTTTTGTCAAGT
GTGGAGTCGTGCATGTCAGTTTCAGGCGTTACAAGCGGTGGCGAGGCGTG
ATTCGACAAGGCATGGTGTCTGTTGTGCGGGCGCACAGTAACAGTGCCGT
TATCGGGTCTCTTGCGAACATGCAAGCATGTGTTATATTTTTTAGTAGGA
AATAAAAGCCGGCCGGTCAGCAGGCTGACTGTTTCTTTTTTTGTTTTGCG
TAAGTACATGTACTTCGTATACTTCCAACGACGTAAGGTTTTTCAAAAAC
ACTCTCCCCACCCGTCCACGAAGAAACAAGCGCGTATTTAGAAGCTTTCC
GTCTGAGTTGTCCCCACCCCCTACCCCCCCCCCCCCTCCGACGATTTGTA
TGATACGGTTCTTTTTGTTTTGCGCCCCCACATCTTATCCTAGCTATCCG
GAGTGGAACGAAGAAGGGTCGAAGATGCGGTCGTTGGCTGTTGGCATCGA
AGGCGTCCTGGCCAAAGATTACGTCTCTAGCGGCCCAGGTAATGGTCGCG
ACCCGCCTGGATGTGTGAGACCCCAGTAGATGCTGCGTCGACGTCCGGAT
TTTGAATTTTGTAGACAGTTGCGTAGCTTTCGCATGTCGTTCAGCAGCAA
TTCCTTGGTCGCGCTTGTTGTAAGCAAAGCCTTGTCTTATCACGTCCATG
GCAACCGAGCGCGATCTGCCTTAAGAGACTAGGGGGCTCATGTTGCGGCA
ATTTGGATTTTTGCTTAAGCGTTTTTGGAACTGTAGACCACGGCGAGAGC
AACACAACCGTCGCGTCGTGCCCTGCTCTATTAAAGATTAAAAAACAATA
TATATATATTTTTGCGATTTTATTAGGAGTATATAGAGTCTATTCGATGT
GCCTAAAATATCCACCAACTCCGAAGGTCACTCCTGTTTTATGCTGTTGA
TTTCTATCGTTGAATGGCTGGCCATTTATAATGGGCGCCAATTTTTTCTT
TTTTACTTCGATAAAAGCATACACTACTGTAAAAGTAAAAGTACAGCGCG
TGTTTGGGCCTTGCCAAGCGGGATGCGTGCCTTTCTTCTTCCGCACACAC
AGCACCCGTTCCTGAGACGAAGGTGGTGTTATACGACGTCCTGCCGAGGG
GATACACGGTCAGTGCTCTGGCGGCCATGTTGTGCAACAAGTGTGACCGG
CCGCTTCCCTCCCCCCCCCTCCCCTCCCCTCCCCCTCCCTCCCTCCCCAT
CGTCCCCGGATTGGGTTTGTGCGTCGTAGACCGGTGGACAGAGACTTCTT
TGCCGCCGGTCGCGAAACGAGCAAAGACTTCTGCCGTGGCACGGCCGAGT
TCAGCGACAGCGACGGCGACGGCGACAGCGCAACCGATGGTAGGGGTTTC
CTCGTTGGCGCCGGCGGTACCCGAGGCAGGGAATGGGGGGGAGGAAGATG
GCGGCGGGATCGACGTTGGGATGGACGACTGAATGGATGCGGGGTGTTTT
TATTTAGTGGTGTAGTTGGGTGTGTAGAGTATATTAATATCGTTCAAGTA
GTAGGAGTAATTGGTGCGTGCACTCGTAAATAGGGGGAGTACGAGGCCGT
ATGTTTTGCTGTAGTGTGGTCGTGTTTTGTGCTCCTTTTTGTGTGTGCGT
GTCGCTCTCTGTGTACGAATCTTCGTCCCGCGGAGTTCAATCGATCATGC
GGCAGAAAAGGTATCGTTTCGGGTGTGAGTGTGTGTGTTGCGGTTATCGA
GAGGCCAATCGGTATGCGGGTGGGGCGGGGGTGATTGGCCGGCTTCAAGA
GCCCTTGCATTGCCAGTCTCTGTCGCGTGTTTATTTTATTTTCTCGCCTT
CTTTGTAATTGTAACACGTAAACTTACTCAAACCGTTGGGGTTTGTATGG
CACAATGATAGCGTTATAGTTTACTTGCAAGAGTACATACAGCAGCCGTC
GGCCATCATTGCAAGTATCGGCAGTCGAAATTAGAAATGAGGGGCTAGTT
TCTAGAGAGGTATGCAGCGGAAGGACATCGCGTTGACTATGGATGGTACT
AGTGGCTCGCTGCCTCGCCCAAACGCACCTTTTTTTATTGAATCACCGCG
GCCGCTACGTCTTTGTTGTGGGCGTGGTGCGGGAACGTGCTCTGAAGGCA
AAACGGAATATGTAGGAGGGGCGCCTGAATTGCCCCAAAGCATTATTGCG
TTGCGGGCCTCTTATGTGTTTTGGAGTGAGCGGGGGCGGGGAGTCGGTGA
ACAATAGCGGGGATTTTTTTTTTTTCGGTGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:756169..759799+

>mRNA_D-herbacea_F_contig100.245.1 ID=mRNA_D-herbacea_F_contig100.245.1|Name=mRNA_D-herbacea_F_contig100.245.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=786bp|location=Sequence derived from alignment at D-herbacea_F_contig100:756169..759799+ (Desmarestia herbacea DmunF female)
ATGGTGAACGGGGCGTTCAAGAGCCAGGCGCTGGCAGGCATCGCGGGTGC
TGGGGGTCTATCGAGCGGGGATGTGCAGAACTGGGTCATGCAGAAATGGT
GAACGGGGCGTTCAAGAGCCAGGCGCTGGCAGGCATCGCGGGTGCTGGGG
GTCTATCGAGCGGGGATGTGCAGAACTGGGTCATGCAGAACTATCCGGAG
TGGAACGAAGAAGGGTCGAAGATGCGGTCGTTGGCTGTTGGCATCGAAGG
CGTCCTGGCCAAAGATTACGTCTCTAGCGGCCCAGCTATCCGGAGTGGAA
CGAAGAAGGGTCGAAGATGCGGTCGTTGGCTGTTGGCATCGAAGGCGTCC
TGGCCAAAGATTACGTCTCTAGCGGCCCAGACCGGTGGACAGAGACTTCT
TTGCCGCCGGTCGCGAAACGAGCAAAGACTTCTGCCGTGGCACGGCCGAG
TTCAGCGACAGCGACGGCGACGGCGACAGCGCAACCGATGGTAGGGGTTT
CCTCGTTGGCGCCGGCGGTACCCGAGGCAGGGAATGGGGGGGAGGAAGAT
GGCGGCGGGATCGACGTTGGGATGGACGACTGAACCGGTGGACAGAGACT
TCTTTGCCGCCGGTCGCGAAACGAGCAAAGACTTCTGCCGTGGCACGGCC
GAGTTCAGCGACAGCGACGGCGACGGCGACAGCGCAACCGATGGTAGGGG
TTTCCTCGTTGGCGCCGGCGGTACCCGAGGCAGGGAATGGGGGGGAGGAA
GATGGCGGCGGGATCGACGTTGGGATGGACGACTGA
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