mRNA_D-herbacea_F_contig100.242.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig100.242.1 vs. uniprot
Match: A0A6H5KHS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS3_9PHAE) HSP 1 Score: 276 bits (706), Expect = 3.330e-77 Identity = 298/875 (34.06%), Postives = 387/875 (44.23%), Query Frame = 1
Query: 1 MHTAAGTGAIESMELLISAGLSPRSRDDGGCTPLHYAA---AHGSAECVSFLCAFARNTTRAGDRRIGDXXXXXXXXXXXXXXXXXXXXXX-GT-ELVHEVNAKGETPLDVARALCGGGVCDTACLRALEDGATIRRTTIGPRARGGVHSGLESGV-----DLQRIMAVWERFFENAAKRACVEQDLATLSVEEYDNDEPRHSGSPPEIQAI-IEGLGGQGNV--YVDDD-----GQAGPAGRTEGEG------------GVVETASEGDCDGVWGTRGNDYGRYED--CVERFEAFHLPD--TSGVAPMRVRAWEEEVEPLSDHGRDSSQGADHSIHAPTTTTQVGKPTFFKGVVRNET-----SSTDDGPSLNQTPRSGTERWA-----RSSYTVKAEIETYSEQYEEVSTAASASLDQ------AWVACWDAASEAVYYWNSAGGELNWNAPPAGSA--------AVSNRIWDSEREAFFAVDESGESHWLSAGGDVLPATSTDYDAVNGNRVRGAATAAAVDG-DGLTPQVWSS---------------PSFPQGLDIYS---------LNEDDDNGNDDVFHPAVAEEGHWFDGESTPGDSSCGIGHGDWGGSQATEAFYAATTENLVGKLHQDRDENASCT----FDAQDERKHADGNSALFSVAAGAGTRGVSFNGYIFDGSTVSDCCPPRIVEEGEETQPPLVHTGDVVEPTTVGAENTDATEIKIDDDGGVHFFDANMYDTQEQPTNNRPSNAYVDGTAGGLNRKEKQEAEMSSVGKVEADELARL-LPRWVMWCPRSPDAP-----SYFVNEETGDASWVLPPEVVVPSGGWLRAWSEEYEAYFYSNQWTAKVTWEMDDLLGVGG 2346
MHTAAG GA+ES+ELL+SAGLSPR+RD G TPLH+A +A CVSFLCA A +T + DR GD GT +++ E NA GETPLD+A AL G V A L A DG RR PR+ GG S L V D QRIMAVWERFFENAA+ DL R SP I A+ G G G V V+ D G+ GR G G V T+ G G G+ GR++ CV+ ++ +L TS VA R A + L G D+ + Q K V E+ SS D L TPR G A R + + +E + + + AA A+ D W+ACWDAASE+VYYW+S GEL+WNAP +A + + +WD +REAFF +DE G SHWL P++ T V +R AA+DG DG T + S+ QG + + + D D G V E+ W + G S + + T N G+ + + D N + FDAQ+E HA S S AGAG DG +D + E+ + + VV T +NT T K + G+ ++ DT EQP++ R S+ D G + + SSV VEAD+LA + LP WV WC SP SYFVNEETG++SWVLPP+ V S GWL AWSEE++A+F++NQWT VTW DLLG GG
Sbjct: 37 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSAAARCVSFLCAVAGSTVLSRDRTAGDTPLHFAVRARQGVCVEVLLSFAAGTNDILREANANGETPLDLAAALSGDDVILLALLEA--DG---RRRQ--PRSNGGNLSYLGRNVEGDTVDFQRIMAVWERFFENAARA-----DLG------------RKKSSPDVISAVGTVGRGEYGGVEQLVNTDETRAAGKLAKDGRWLGRGQPRATQTLDRDISFVTTSELGGGGGGESQSGDRNGRWDGGWCVDTADSRNLRSRSTSSVATARDLARGPPPQHLERDGEDAHVDVAPLLPVGPMRRQGVKDDLSVQVGVGESGTTLLSSDDADLHLFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPPIKATNAAAEAAADNPYRRHGTWIACWDAASESVYYWDSNSGELSWNAPGPSTAIERGNRLNGIPSPLWDPQREAFFTIDEDGASHWLVG----YPSSPTWTTPVVEHR-------AAMDGADGDTASLVQEYNPDRTTVSKESTTYTSWQQGSAVAAAAPEPSSSEVECDRDRGILGTTANQVEEDPAWDRQQPLAGFSHS---------LRMVDRQSIQTLPNTCGEKYTEDDVNGNDDLHEFFDAQEE--HAARCSTPSSSHAGAGQECAV---EPIDGDAGADNRVVHLASGPEQQRCLRANAAAVVSEYT---QNT-TTAGKGNQSDGI-----DLSDTDEQPSSGRDSHQDTDQNGLGAVEGGTRFHDESSV--VEADDLAMIRLPLWVQWCSYSPHDDDDTNLSYFVNEETGESSWVLPPDAVAESRGWLLAWSEEHQAHFFANQWTGNVTW---DLLGPGG 848
BLAST of mRNA_D-herbacea_F_contig100.242.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI) HSP 1 Score: 268 bits (686), Expect = 1.530e-74 Identity = 295/903 (32.67%), Postives = 385/903 (42.64%), Query Frame = 1
Query: 1 MHTAAGTGAIESMELLISAGLSPRSRDDGGCTPLHYAA---AHGSAECVSFLCAFARNTTRAGDRRIGDXXXXXXXXXXXXXXXXXXXXXX-GT-ELVHEVNAKGETPLDVARALCGGGVCDTACLRALEDGATIRRTTIGPRARGGVHSGL----ESG-VDLQRIMAVWERFFENAAKRACVEQDLATLSVEEYDNDEPRHSGSPPEIQAI-IEGLGGQGNV--YVDDD-----GQAGPAGRTEGEG----------------------GVVETASEGDCDGVWGTRGNDYGRYEDCVER--------FEAFHLPDTSGVAPMRVRAWEEEVEPLSDHGRDSS------------QGADHSIHAPTTTTQVGKPTFFKGVVRNETSSTDDGPSLNQTPRSGTERWA-----RSSYTVKAEIETYSEQYEEVSTAASASLDQ------AWVACWDAASEAVYYWNSAGGELNWNAPPAGSA--------AVSNRIWDSEREAFFAVDESGESHWL---------------------SAGGDVLPATSTDYDAVNGNRVRGAATAAAVDGDGLTPQVWSSPSFPQGLDI------YSLNEDDDNGNDDVFHPAV--AEEGHWFDGESTPGDSSCGIGHGDWGGSQATEAFYAATTENLVGKLHQDRDENASCT----FDAQDERKHADGNSALFSVAAGAGTRGVSFNGYIFDGSTVSDCCPPRIVE--EGEETQPPL-VHTGDVVEPTTVGAENTDATEIKIDDDGGVHFFDANMYDTQEQPTNNRPSNAYVDGTAGGLNRKEKQEAEMSSVGKVEADELARLLPRWVMWCPRSP------DAPSYFVNEETGDASWVLPPEVVVPSGGWLRAWSEEYEAYFYSNQWTAKVTWEMDDLLGVGG 2346
MHTAAG GA+ES+ELL+SAGLSPR+RD G TPLH+A G+A CVSFLC A +T + DR GD GT +++ E NAKGETPLD+A AL G D + AL DG R PR+ GG S L E G VD QRIMAVWERFFENAA+ DL SP I A+ G GG G V V+ D G+ GR G G G V + GD +G W D G D + + L DTS +A + A + L G D QGA + QVG ++ SS D L TPR G A R + + +E + ++ + AA A+ D AW+ACWDAASE++YYW+S GEL+WNAP +A + +WD +REAFF +D+ G SHWL A GD+ DY D + + + S+ QGL I +S +E + + + D + V +E +DG+ D QA + N G + D N + FDAQ+E HA SA AGAG DG +D R++ GEE Q L + VV +T +NT DG +++DT+EQP+ R S+ D G + + S+V + L RL P WV WC SP + YFVNEETG++SWVLPP+ V S GWLRAWSEE++A+F++NQWT VTW DLLG G
Sbjct: 1 MHTAAGVGAVESIELLLSAGLSPRTRDHSGRTPLHHACLFPGSGAARCVSFLCVVAGSTVLSRDRTAGDTPLHFAVRARHGVCVEVLLSFAEGTSDILREANAKGETPLDLAAALSG----DDGIVLALLDGDRRRHQ---PRSNGGKLSYLGRNVEGGTVDFQRIMAVWERFFENAARA-----DLGGKK------------SSPDVISAVGTVGRGGYGGVEQLVNTDETRGVGKLAEDGRWLGRGQPRATQTFDRDRHFVTTSELGGGGVGESQTGDRNGRW-----DGGWCVDTADSRTFRSRRTWRPSGLADTSSIATAQDLARGTPPQHLERDGEDEHVDVAPLQSPHRRQGAKEDLGV-----QVGVGESGTTLL----SSDDADLHLFHTPRGGDGVEAVRLPERIHGNIDSTLEPSTPASKDTNAAAEAAADNPYRRHGAWIACWDAASESIYYWDSNSGELSWNAPAPSTAIERGERLNGFPSPVWDPQREAFFTIDKDGASHWLVDSPSSPTWTTPVVEHRAATDGADGDIASLVVQDY---------------TYDRTSASEESTTFSSWQQGLAIGAAAPEWSSSEVERDRDRDALNNTVNQVDEVLAWDGQQLLAGLPYSFPMLD---RQAVQQL-----PNTCGDEYSKDDINGNDDLHGFFDAQEE--HATRRSAPSFSQAGAGQECAV---EPIDGDARAD---GRVLHLASGEEQQRCLRANAAAVVSEST---QNTTTAGKGNQPDGN------DVFDTEEQPSYLRDSHQDTDQNGLGAVEGGTRSHDESAVAEAYDPALTRL-PLWVQWCSYSPHDGDDTNNQPYFVNEETGESSWVLPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTW---DLLGPRG 821 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig100.242.1 >prot_D-herbacea_F_contig100.242.1 ID=prot_D-herbacea_F_contig100.242.1|Name=mRNA_D-herbacea_F_contig100.242.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=783bp MHTAAGTGAIESMELLISAGLSPRSRDDGGCTPLHYAAAHGSAECVSFLCback to top mRNA from alignment at D-herbacea_F_contig100:700662..703248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig100.242.1 ID=mRNA_D-herbacea_F_contig100.242.1|Name=mRNA_D-herbacea_F_contig100.242.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2587bp|location=Sequence derived from alignment at D-herbacea_F_contig100:700662..703248- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig100:700662..703248- >mRNA_D-herbacea_F_contig100.242.1 ID=mRNA_D-herbacea_F_contig100.242.1|Name=mRNA_D-herbacea_F_contig100.242.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4698bp|location=Sequence derived from alignment at D-herbacea_F_contig100:700662..703248- (Desmarestia herbacea DmunF female)back to top |