mRNA_D-herbacea_F_contig100.236.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.236.1
Unique NamemRNA_D-herbacea_F_contig100.236.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:650279..650669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.2391458-CDS-D-herbacea_F_contig100:650278..6505781622927411.2391458-CDS-D-herbacea_F_contig100:650278..650578Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 650279..650578 +
1690790155.9297495-CDS-D-herbacea_F_contig100:650278..6505781690790155.9297495-CDS-D-herbacea_F_contig100:650278..650578Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 650279..650578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927411.2516096-UTR-D-herbacea_F_contig100:650578..6506691622927411.2516096-UTR-D-herbacea_F_contig100:650578..650669Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 650579..650669 +
1690790155.9374104-UTR-D-herbacea_F_contig100:650578..6506691690790155.9374104-UTR-D-herbacea_F_contig100:650578..650669Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 650579..650669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.236.1prot_D-herbacea_F_contig100.236.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 650279..650578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.236.1

>prot_D-herbacea_F_contig100.236.1 ID=prot_D-herbacea_F_contig100.236.1|Name=mRNA_D-herbacea_F_contig100.236.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=100bp
FPLFPKTCTKYRKPGKTPQPSTSRSDDTQQTTVHSKGINQTRRLATIICM
CCRTLSDGNNKNNNIIVKQNIKDIMARDNTYLVPGIRDARSTIYAKNKK*
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mRNA from alignment at D-herbacea_F_contig100:650279..650669+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.236.1 ID=mRNA_D-herbacea_F_contig100.236.1|Name=mRNA_D-herbacea_F_contig100.236.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=391bp|location=Sequence derived from alignment at D-herbacea_F_contig100:650279..650669+ (Desmarestia herbacea DmunF female)
TTCCCTTTGTTTCCAAAAACATGCACAAAATACAGAAAACCCGGCAAAAC
CCCGCAACCAAGTACATCCCGCAGTGACGACACACAACAAACGACCGTTC
ACAGTAAGGGTATAAATCAAACAAGGCGGTTGGCGACAATAATATGTATG
TGCTGCAGAACGTTGTCGGATGGCAATAACAAAAATAATAATATCATTGT
CAAACAGAACATCAAAGACATCATGGCTCGTGACAACACATATTTGGTAC
CCGGCATCAGAGATGCACGAAGTACTATATATGCAAAAAATAAGAAATAA
AAATCCAACTGTTTCTGCCAAAAACTCAAGTTGGAACATTAGGAGTCCAG
CAAGCACTACTTGTACCGAGTATGTAAAAACAAAACTTTTC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig100:650279..650669+

>mRNA_D-herbacea_F_contig100.236.1 ID=mRNA_D-herbacea_F_contig100.236.1|Name=mRNA_D-herbacea_F_contig100.236.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=600bp|location=Sequence derived from alignment at D-herbacea_F_contig100:650279..650669+ (Desmarestia herbacea DmunF female)
TTCCCTTTGTTTCCAAAAACATGCACAAAATACAGAAAACCCGGCAAAAC
CCCGCAACCAAGTACATCCCGCAGTGACGACACACAACAAACGACCGTTC
ACAGTAAGGGTATAAATCAAACAAGGCGGTTGGCGACAATAATATGTATG
TGCTGCAGAACGTTGTCGGATGGCAATAACAAAAATAATAATATCATTGT
CAAACAGAACATCAAAGACATCATGGCTCGTGACAACACATATTTGGTAC
CCGGCATCAGAGATGCACGAAGTACTATATATGCAAAAAATAAGAAATAA
TTCCCTTTGTTTCCAAAAACATGCACAAAATACAGAAAACCCGGCAAAAC
CCCGCAACCAAGTACATCCCGCAGTGACGACACACAACAAACGACCGTTC
ACAGTAAGGGTATAAATCAAACAAGGCGGTTGGCGACAATAATATGTATG
TGCTGCAGAACGTTGTCGGATGGCAATAACAAAAATAATAATATCATTGT
CAAACAGAACATCAAAGACATCATGGCTCGTGACAACACATATTTGGTAC
CCGGCATCAGAGATGCACGAAGTACTATATATGCAAAAAATAAGAAATAA
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