mRNA_D-herbacea_F_contig100.220.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: D7G1P7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 2.150e-120 Identity = 340/869 (39.13%), Postives = 433/869 (49.83%), Query Frame = 2
Query: 200 ATRRRAQPSLSMSNEGGGFNDPYGDEATP--PPGRAGDDGGSELSAPAPYRDEHTSGASKFRDLLNRAKKVNPSAEGAARAPPPSRPQPAQXXXXXXXXPANAPNYDDDSLWEDEPQIGSPDLPDPPLRNEMPGLNFGSELDDGRPSEGGEREGEGVSVGGGSRFQRMMNQAEYNDQRQEAGVGPRVSPRSPGGKPRAEV-----LTRDEKQRALSEAVDRQQKLMSAARGFDLDDPTLDGPALAKKKALSRAQAEATAGGYVPSSKASDDYLDALKSDSKRKNKELHAKLSGRPVPPEP------RQPAPRAPGDEDTGPYEPQYAQDDDQRQSEYVPQRRRHSTSSIQNESDAYLAGLSGIKIDL-DSNPYLKKQRQEQASASAGVAKNVLKLTPPSGQKGTQPPLSPTMTYAEKLAKAREAKASGSA--GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSYSEKLKQAREAKDTESPAVSSSTPAPPVTSAPVVTSAVPPARTSLEQQVTEDAVLVTEDATRAKVTRVVDMLAERETTGKVDGARAAELRSALIDTQETLRAETYGSSEAAVAPAAPTNPSIDDEDVTQAKIMRVMDLLTEHKTAGLVGEERVAELREALVDTREALRAETYGRNAPATTTISPPLAEVARSAPAGGPTSSAQPQRLVQPPAQPAPIDA----------EAKDTLSRCSILLGAHVHTTLKGQDLQALREGLASSLAIVEAQI----AGTGAQSAQQVRQAPSGAEYVGDGVVPESVNGMQSVGEVLSDMGVGKKPESFEPENDSG-GDKGWAGGSLGEYEKSVATKGLGYLLKHRGGKGYGRGRLTGREAEVMVSTLAELTDILQEEMVDN 2713
A R P+LSM+++G G +G E + P G GD + L P PYR+EHT G ++F++LL RA + +GA +P + P AP+YDDD+ WE++ IGSPD+PDPPLR MPGL+ G ELD G GGE ND RQEAG+ PR SPRSP + ++++EK+RA+ AV+RQQK+M+ ARG DLDDPTL+G LA+KKALSRAQAEA AGGYVPSS A+DDYL++LK+DS++K KE AKL G P+PP P A D P + +D +R PQ+R ++ SIQN++D Y+A L GIK++L D NPYLK+ E+ + ++ P K PPL P M+YAEK+ A+ AKA+G+A XXXXX +SY+EKLKQA+ K A + V A R L P+ +D+ D +QAK++++MDLLTEHKTAGL GE+RV+ELR +LVD REALRAETYGR+A E L RCS LL AHVH+ L GQDLQAL EGLASSL IV AQ+ A D VP G+QSVG LSDMGV KKP SF PE G G GW GGSLGE EK+ A+K LGYLLKHRGGKGYGRG++TG +AE MV+ LAE+T+I++EEMV+
Sbjct: 2 AVSRDTLPALSMADDGEGAL--FGPEESEGGPAGPGGDS--NPLGPPPPYREEHTPGGTRFKELLARA-----NGQGAPXXXXXXXAKPRRALP-----PEGAPDYDDDNQWEEQ-AIGSPDVPDPPLRENMPGLDLGPELDYGG---GGEAXXXXXXX---XXXXXXXXXXXXNDDRQEAGMAPRASPRSPQEVAKRAAAAQAPVSKEEKERAIKAAVERQQKMMAKARGIDLDDPTLEGAELARKKALSRAQAEAQAGGYVPSSSAADDYLNSLKADSQKKQKETQAKLRGEPLPPREGPLLSASPPTETATSDVPDKSAAPLSSGEDYER---VKPQKRTAASWSIQNKADQYMASLKGIKVELADDNPYLKESLVEEP-------RQPVRRPPXXXXK---PPLGPQMSYAEKMKLAKGAKAAGTATAAAPSSNVVAAPVATLPPATEAXXXXXPSSGSPALSYAEKLKQAQAQKAA---------------------------------------------AGNGVFPKSVPXXXXXXXXXXXXXXXAPASRRLLEQDM-------------------PSGGLVDEGD-SQAKMVKLMDLLTEHKTAGLEGEDRVSELRHSLVDAREALRAETYGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAILRRCSALLQAHVHSGLAGQDLQALVEGLASSLTIVTAQVVTGTAXXXXXXXXXXXXXXXXXXXXDDTGVPAYAGGIQSVGGALSDMGVAKKPASFLPEEGEGDGSAGWTGGSLGEEEKAAASKALGYLLKHRGGKGYGRGKMTGAQAEAMVAALAEVTEIMEEEMVEE 771
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC) HSP 1 Score: 111 bits (278), Expect = 4.830e-24 Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query: 3697 TQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVETALWTAAAMFLLWGMWYRGVVKGAKTFMET*HREE 4047
T+CES+ETTI KRRL FAGG+AR+ RLP RVM GT++GG+NP G KTW + +++D F A T +T+ ++FGVETALW AA G WYRG+++ A+ FM H E
Sbjct: 23 TRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRA-TEGSTELAPLVFGVETALWPTAAKKA--GKWYRGILEAAERFMVRWHEAE 136
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 107 bits (266), Expect = 1.330e-22 Identity = 57/119 (47.90%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVETALWTAAAMFLLWGMWYRGVVKGAKTFMET*HREE 4047
R T+CES+ETTI KRRL FAG + R+ GRLP R+M GT++GG +P G KTW + + +D F A T D P ++FGV TALW AA G WYRG+++ A+ FM H E
Sbjct: 59 RITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSP-LVFGVGTALWPTAAKQT--GKWYRGILEAAEQFMGRWHEAE 174
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 7.340e-15 Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVETALWTAAAMFLLWGMWYRGVVKGAKTFMET*HREE 4047
++ C+SVE+TI +RRLLFAG +AR+ GRLPKR+MLG L GG+ GRG+P + W L DD F A +TD FGV W A W+ GV++GA+ + + H++E
Sbjct: 749 KRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEA-EHGSTDAEPCFFGVLETTWVEKAKVDRGVSWHTGVLQGAQRCLASWHKKE 866
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.960e-13 Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGV----ETA---LWTAAAMFLLWGMWYRGVVKGAKTFMET*HREETARRIVHATRKRLRRPQVARTGKGG 4122
++ +C+SVE TI +RRLLFAG +AR+ GRLPKR+MLG L+GG+ RG + W + +LDD AF A T P + G+ +TA WT AA W+ V++GA+ FM + H +E A KR +P + G GG
Sbjct: 208 KRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCL-GIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRAL-KRHHKPAI--NGAGG 354
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.170e-11 Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGV----ETA---LWTAAAMFLLWGMWYRGVVKGAKTFMET*HREETA 4053
++ +C+SVE TI +RRLL A +AR+ GRLPKR+MLG L+GG+ RG + W + +LDD AF A T P + G+ +TA WT AA W+ V++GA+ FM + H + A
Sbjct: 164 KRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFGADHGSTKTDPCCL-GIPVPKDTAPKLKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKRPA 290
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5L5Z0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z0_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.190e-11 Identity = 67/183 (36.61%), Postives = 90/183 (49.18%), Query Frame = 1
Query: 3610 VL*DAKSKRSGRSLYYLYIACRTQRRSRKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGV----ETA---LWTAAAMFLLWGMWYRGVVKGAKTFMET*HREETARRIVHATRKRLRRPQVARTGKGGRPSGD 4137
V+ D + K + R L Y ++ +C SVE TI +RRLLFAG +ARK GRLPKR+MLG L+ G+ G + W + +LDD AF A T P + G+ +TA WT AA W+ V++GA+ FM H +E A KR +P G GGR D
Sbjct: 304 VIRDKRKKITYRQLPYAQTL-------KRVKCHSVEATIRQRRLLFAGALARKPDGRLPKRLMLGELARGEKGRMGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCL-GIPVPKDTAPKLKWTEAAKVEGGVPWHVAVLQGAERFMTYWHEKEEEASRQRAL-KRNHKPTT--NGAGGRQETD 475
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5JKQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ7_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.190e-11 Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVE-------TALWTAAAMFLLWGMWYRGVVKGAKTFMET*HREE 4047
++ +C+SVE TI +RRL+FAG +AR+ G LPKR+M G L+GG+ RG + W + +LDD F A T P FG+ T WT AA W+ V++GA+ FM + H +E
Sbjct: 186 KRVECQSVEATI-RRRLMFAGALARQPDGLLPKRLMFGELAGGEKRRRGGQKQNWLKCVLDDLKVFGAEDGSTKTDP-CCFGIPVPKDTEPTLKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKE 309
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.950e-11 Identity = 58/153 (37.91%), Postives = 80/153 (52.29%), Query Frame = 1
Query: 3691 RKTQCESVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVETAL-------WTAAAMFLLWGMWYRGVVKGAKTFMET*H-REETARRIVHATRKRLRRPQVARTG-KGG 4122
++ +C+SVE TI +RRLLFAG +AR+ GRLPKR++LG L+GG+ + W + +LDD AF A T P + G+ WT AA W+ V+ GA FM + H +EE A R R+ R P+ G KGG
Sbjct: 165 KRVECQSVEATIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGADHGSTKTDPCCL-GIPVPKDTGPKLKWTEAAKVEEGVPWHAAVLMGADRFMTSWHEKEEEASR----QRELKRNPKPTTNGAKGG 312
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 5.800e-8 Identity = 65/184 (35.33%), Postives = 83/184 (45.11%), Query Frame = 1
Query: 3622 AKSKRSGRSLYYLYIACRTQRRSRKTQCE-SVETTILKRRLLFAGGIARKQGGRLPKRVMLGTLSGGQNPGRGRPAKTWAQRLLDDRTAFCAITVETTDKPHMIFGVETALWTAAAMFLLWGMWYRGVVKGAKTFMET*HREE---TARR----------IVHATRKRLRRPQVARTGKGGRPS 4131
+K KRS R L Y + CE ++E T+ KRRL FAG + R + RLPKR++LG ++GG RG W RL +D AF +M E A W A +WY V GA FM HR+E +ARR V + KR R + A GK GRPS
Sbjct: 505 SKRKRSDRPLSYAQALI-------QAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGY-RGGQESDWVSRLGEDLVAF-----------NMGDEKEGAKWKECAKDP--EVWYNKVEDGAAWFMRKWHRQEAEASARRQXXXXXXXESTVISRPKRKRAGEAAVGGKKGRPS 667 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig100.220.1 >prot_D-herbacea_F_contig100.220.1 ID=prot_D-herbacea_F_contig100.220.1|Name=mRNA_D-herbacea_F_contig100.220.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=892bp MIRKRHRGTILLVIINSWLVPCHGFAYTALHCSSSRHASLVASPGTAHAPback to top mRNA from alignment at D-herbacea_F_contig100:408322..415054+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig100.220.1 ID=mRNA_D-herbacea_F_contig100.220.1|Name=mRNA_D-herbacea_F_contig100.220.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=6733bp|location=Sequence derived from alignment at D-herbacea_F_contig100:408322..415054+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig100:408322..415054+ >mRNA_D-herbacea_F_contig100.220.1 ID=mRNA_D-herbacea_F_contig100.220.1|Name=mRNA_D-herbacea_F_contig100.220.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=5352bp|location=Sequence derived from alignment at D-herbacea_F_contig100:408322..415054+ (Desmarestia herbacea DmunF female)back to top |