mRNA_D-herbacea_F_contig10.172.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI) HSP 1 Score: 375 bits (962), Expect = 5.030e-114 Identity = 498/804 (61.94%), Postives = 536/804 (66.67%), Query Frame = 1
Query: 1 RPVPAGLLFAMVAAAGKG--VRAFAPISPTDWP---AFGRARSDPG------EARGSWPQLSGSWEAGGSWVSEGVCSGRRRRGRREEGGSGRRTGRWTWLATATPNGGVGDAGREGRTDAGTDTNTPAA---AGRAPAPRATEASRDSSVLPRQEQGTGRMRADGSRAASKLADPTRGASGGGEGXXXXGEVKPRTAVFNGVKRGDKSKRGAXXXRGSQERYI-----GSEGKGRGKKLAELVMYDFGIEETSLPT----AANKTELSQKVEAELFGEYDVTVPGPASSLAAVGAVAVEGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVALGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGAFVVRILQARAILEATEGNFEEARKYFGFALARDPYSLPVMVAWXXXXXXXXXXXXXXXXXXXXXVTEADNPSVWKVYEQAEARRGFTAEAMAVYERGVTAMMTEDKSSAGWWDKGPSLLDPATGMGSSLLDQASRSLGTSSAEMALRVSRIIGGVQWASDYMSFSALNSSR---GADVAFEP 2334
RP+PAGL+ AM A AG G V AFAPI+ DWP A G R D ++RG WPQL+ + GG V+ V GRR G R LA A P G N PA AGR P R P QG G + A +R S G E +PRT VFNGV+RG KRG XX +E +G+GK L ELVM+D + + S P A+NKTELS KVEAELF EYD VPGPA+S AVG A QERTGRPL INLDLLSY A+Q+++KG+Y EAR+LYR CVELDPRDGRGWLGLARQMQKI KYDKA RLFEAGLENC DNPYLLQAFAVMEEQRGNQAKAL LLNRSVR HPEHTASWVALGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KG +VVRILQ KYFGFALARD XXXXXXXXXXXXXXXXX T+ADN +W VYEQ E R GF EA+AVY+RGV A+M K ++GPSLLDPAT +ASRSL SS EMAL VSRIIGGVQWASDYM+FSALNSS G +A+EP
Sbjct: 48 RPLPAGLILAMAATAGGGNVVCAFAPIASIDWPGGLAGGGGRPDGSCNTNLADSRGWWPQLTAVVDRGGRGVAARVGEGRRSYGARRXXXXXXXX-XXXXLANAQPGGEXXXXXXXXXXXQ--SANGPATTEQAGREPQARG----------PPVRQGRG---VSNGNSTPPRASQSRAFSRGRNPRGWGAEARPRTTVFNGVRRGG-GKRGTGXXXXXXXXXXXXXXXAAEMEGQGKTLKELVMFDQILSQKSPPAGSAAASNKTELSAKVEAELFEEYDAMVPGPAAS--AVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGNPKGPYVVRILQXXXXXXXXXXXXXXXXKYFGFALARDXXXXXXXXXXXXXXXXXXXXXXXXXXXEIATTTQADNADIWNVYEQVEMRAGFPEEAVAVYQRGVVAVMAGKKEPPPK-ERGPSLLDPATAXXXXXXXEASRSLSMSSTEMALEVSRIIGGVQWASDYMTFSALNSSSKTGGERMAYEP 831
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK) HSP 1 Score: 143 bits (360), Expect = 2.620e-33 Identity = 77/160 (48.12%), Postives = 98/160 (61.25%), Query Frame = 1
Query: 721 NKTELSQKVEAELFGEYDVTVPGPASSLAAVGAVAVEGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVA 1200
N T LS+KV +EL YD VPGP S + R L INLDL++YHARQ IKGD A ++Y+ C+ELDPRDGR WL LAR + ++++ A +LF GL NPYLLQA+ VMEEQRGN KAL L +++ P+H AS+VA
Sbjct: 114 NSTTLSKKVYSELMSTYDEQVPGPDPS---------------KPPARALPINLDLMTYHARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQAYGVMEEQRGNSVKALELYSKATLADPKHAASYVA 258
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA) HSP 1 Score: 131 bits (330), Expect = 5.500e-29 Identity = 73/130 (56.15%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 727 TELSQKVEAELFGEYDVTVPGPASSLAAVGAVAVEGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEE 1116
TELS KVEAEL G+YD VPGP A RPL INLDLLSY A+Q I GD EA +LY+ CVELDPRDGRGW+GLAR K +A L+E GL N DNPYLLQA+ VMEE
Sbjct: 1 TELSLKVEAELLGQYDELVPGPMPGQRA----------------RPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 114
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA) HSP 1 Score: 114 bits (285), Expect = 4.490e-25 Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 844 QERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVALGL 1209
+E RPL INLDLL++ AR +GD A Y+ C++L+P+DGR WLGL++ ++ + ++AARL + GL NPYLLQA+ ++E+RG Q +ALA +R+V+ P H ASWVA GL
Sbjct: 60 KEEGSRPLRINLDLLTHRARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQAWGTLQERRGFQDEALASYSRAVKAQPRHAASWVACGL 181
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD) HSP 1 Score: 112 bits (280), Expect = 2.970e-22 Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1
Query: 733 LSQKVEAELFGEYDVTVPGPASSLAAVGAVAVEGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVALGL 1209
L +KV+ L E D P A SL RPL IN+DL +HARQ +G+ +EA +L+R CV++DP DGRGWLGLAR + + + + F + C N +LLQA+ +MEE+ GN ++A LL+ ++R +H SWVALG+
Sbjct: 31 LERKVKEVLMDEEDRVPPLGAGSLE------------NYLPSRPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEEKAGNISRARRLLHSAIRADQKHAPSWVALGM 177
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.490e-20 Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 1
Query: 769 YDVTVPGP-ASSLAAVGAVAVEGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLAR----------------------QMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVALGL 1209
+DV +PGP A ++ V V RP+ ++ DLL++ A+Q + A LYR C++L+PRD R WLGLAR Y KA +++ GL C +NPYLLQ V+EE++GN+ A+ L R+ ++ P+H ASWVA G+
Sbjct: 7 FDVQIPGPDAGGISPV-------VQKPPVKTRPVGLHFDLLAHQAKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQGLGVLEEKKGNKQVAMGLYIRACQSDPQHAASWVARGV 169
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: R7QLC0_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLC0_CHOCR) HSP 1 Score: 96.7 bits (239), Expect = 6.320e-17 Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 862 PLAINLDLLSYHAR-QRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVDNPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVALGL 1209
PL + LDLL+YHAR + A AR+LYR CV+++ DGR WLGLA+ A + F G+ + N +LLQA+ V+EE+ G +A +VR +P+HT SWVALGL
Sbjct: 151 PLPVQLDLLNYHARVASRRRNTRARARRLYRRCVDINSADGRAWLGLAKLHLAEGDVANARKTFRGGVNSSRKNSHLLQAWGVLEEREGFVDRAKGFYEAAVRANPQHTPSWVALGL 267
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A1Z5JMI6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMI6_FISSO) HSP 1 Score: 95.1 bits (235), Expect = 2.180e-16 Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = 1
Query: 796 SSLAAVGAVAV-EGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVD----------NPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVAL 1203
+SL GAV EGV R G L IN D L+Y A++ KG EA +LY VE+DPRDGR +LGL+R Q+ Q + A G+ N NP+LLQA +EE+ G ++A +L +VR+ P H A WVAL
Sbjct: 241 TSLMGDGAVQYREGV----RLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVAL 383
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A1E7FB08_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB08_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.720e-15 Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1
Query: 850 RTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVD-----------NPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVAL 1203
R G PL +N D L+YHA++ EA++LY +++DPRDGR ++GL+R Q+ + + A G+ V NP+LLQ +EE+ G+ ++A +L +VR+ P H ASWVAL
Sbjct: 33 RLGNPLRVNADRLNYHAKKELRSNRLEEAQELYEQAIQIDPRDGRAYIGLSRCAQRRRDFKLAKEYLRIGIAQSVSCGYDSKPDVGANPFLLQTLGCLEEKMGHLSEAESLYISAVRSRPSHAASWVAL 161
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Match: A0A448YVH5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.090e-15 Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 733 LSQKVEAELFGEYDVTVPGPASSLAAVGAVAV-EGVGAQERTGRPLAINLDLLSYHARQRHIKGDYAEARKLYRGCVELDPRDGRGWLGLARQMQKIQKYDKAARLFEAGLENCVD-----------NPYLLQAFAVMEEQRGNQAKALALLNRSVRNHPEHTASWVAL 1203
L++ VE L+G Y +SL GAV EGV R G PL IN D+L+ HA++ EA++LY +++DPRDGR +LGL+R Q+ + + A G+ V NP+LLQA +EE+ G+ ++A +L +VR+ H ASWVAL
Sbjct: 229 LTRMVEDRLYG-YRRGTETYETSLMGDGAVQFREGV----RLGNPLPINADILNXHAKKELRSNRLEEAQELYEMAIQIDPRDGRAYLGLSRCAQRRRDFKLARECLRIGIAQSVSCAEDSTPDXGANPFLLQALGCLEEKAGHLSEAESLYISAVRSRASHAASWVAL 392 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig10.172.1 >prot_D-herbacea_F_contig10.172.1 ID=prot_D-herbacea_F_contig10.172.1|Name=mRNA_D-herbacea_F_contig10.172.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=769bp MVAAAGKGVRAFAPISPTDWPAFGRARSDPGEARGSWPQLSGSWEAGGSWback to top mRNA from alignment at D-herbacea_F_contig10:1101686..1119978+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig10.172.1 ID=mRNA_D-herbacea_F_contig10.172.1|Name=mRNA_D-herbacea_F_contig10.172.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=18293bp|location=Sequence derived from alignment at D-herbacea_F_contig10:1101686..1119978+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig10:1101686..1119978+ >mRNA_D-herbacea_F_contig10.172.1 ID=mRNA_D-herbacea_F_contig10.172.1|Name=mRNA_D-herbacea_F_contig10.172.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4614bp|location=Sequence derived from alignment at D-herbacea_F_contig10:1101686..1119978+ (Desmarestia herbacea DmunF female)back to top |