mRNA_D-herbacea_F_contig10.166.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.166.1
Unique NamemRNA_D-herbacea_F_contig10.166.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:986238..991609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size329
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.166.1prot_D-herbacea_F_contig10.166.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 986238..989968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.5801244-CDS-D-herbacea_F_contig10:986237..9863591622927398.5801244-CDS-D-herbacea_F_contig10:986237..986359Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 986238..986359 -
1690790148.307637-CDS-D-herbacea_F_contig10:986237..9863591690790148.307637-CDS-D-herbacea_F_contig10:986237..986359Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 986238..986359 -
1622927398.5942438-CDS-D-herbacea_F_contig10:989907..9899681622927398.5942438-CDS-D-herbacea_F_contig10:989907..989968Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 989908..989968 -
1690790148.3239803-CDS-D-herbacea_F_contig10:989907..9899681690790148.3239803-CDS-D-herbacea_F_contig10:989907..989968Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 989908..989968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.6084244-UTR-D-herbacea_F_contig10:989968..9900161622927398.6084244-UTR-D-herbacea_F_contig10:989968..990016Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 989969..990016 -
1690790148.337708-UTR-D-herbacea_F_contig10:989968..9900161690790148.337708-UTR-D-herbacea_F_contig10:989968..990016Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 989969..990016 -
1622927398.6209674-UTR-D-herbacea_F_contig10:991512..9916091622927398.6209674-UTR-D-herbacea_F_contig10:991512..991609Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 991513..991609 -
1690790148.3451092-UTR-D-herbacea_F_contig10:991512..9916091690790148.3451092-UTR-D-herbacea_F_contig10:991512..991609Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 991513..991609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.166.1

>prot_D-herbacea_F_contig10.166.1 ID=prot_D-herbacea_F_contig10.166.1|Name=mRNA_D-herbacea_F_contig10.166.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=61bp
MSGAYSSDEEAEVDQFHDEQKYPSSAYDPRQQVDRGGDDHVEQGGVPRGG
DWVEGPGWRMK
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mRNA from alignment at D-herbacea_F_contig10:986238..991609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.166.1 ID=mRNA_D-herbacea_F_contig10.166.1|Name=mRNA_D-herbacea_F_contig10.166.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5372bp|location=Sequence derived from alignment at D-herbacea_F_contig10:986238..991609- (Desmarestia herbacea DmunF female)
TTAGCTGTTTCAGGCAGGGCAACCACGCAACCACGACTCACCAGCGAGTC
AGTGTCGGTGTAGCACTATACCCTGCAGTGGCTGGCACGATATCGAGGTA
CGTACTACGTGTAAACAGGCGGCATATGTTCACAGCAAGTAAACAGGATA
GAGCATACTGTTTGATTCTGCTTGCATTTATTTTTATTTACAGCACGTAC
ATGCATTTGAAACATGAAACATGATGCCTTGTAGACGACATACATACGAA
GTATATGTACAAGTAGGTATATCCTTCCTACTGCCTCGTCCATGTCCAGC
GTGCAAATAAGCACAGGGTGGGCTGATTGTTTTTGCGTGCGCTTCGAGAG
GGGGGGGATCGCGAGTCGCAAATAGTACCGCGGGCCCCCTCTCATTCTGT
TTATCCTTGTCCACAGCATCGACACTACTGTAACAGCAACAGCAACGACA
AAGAGCCAGTGGTGTCCAAGCTTGCATTCAATCGACGATCCTTCCCTGCT
GAGACCTTTGACCTGAGACACTCAAAACGAGTTGCAGATTGCTAGGCAAG
GCCGACCAAATAAGCTGGGCCAAATCATTTCTTTATTTGCACAACAAGTA
AGTGCCATGACTTTATGGCAAGAGTCCCACGCTATATAACAAGGGCGCGA
ACAAACTTTAGTCACTCAAGAGCAAGGTCATCACGGCACCGATTTCGGCA
TCATATCAGGCGCACACAATAACCTGTTGCATCTAACTGTTGTTGTTGTT
GTTGTTGTGGCGTCCTGAAGTACCTGGTACAAGTTTAGGACGAAGGTGGT
GGTGGTTTGCCGAGCTCAGTTGGCCATAGCTGCGTTATCTTATACTCACT
CGTACTATTAATACTTCGTATGAAGTATATACTCGTACTCGTAGGGGTAC
TAGGAGGCGGGGTACTACCGAGACTTACTGCTCGTACTTTTTTTCTTTTT
TTTTTCTCCGTCCCATTTATTACCTTCACCCTATTCTCTCTCTAGCTCCA
TCTCTCTTCGTAAGTCAGATCCGGGGTCACATAGTAGGCGCTCCTCCCGC
CTTCCCACTACGGTACGTGCCTATGTTTTTATCGCGAGAAGAGTGCAGCA
CGTTCTTCCCTCGTCGATTTTCATCGGATTGTACGTACTCACCGTCTCTC
GTTTTCCGTTACGGAAGATGGCACAGAAAAGTGCCACCGGGAATTGAACT
CCAAACTTCCGCCAACAGAGGCGAACGCTCAGTCTCGTAGACCATCGTGC
CACCCCTGTCCGTACTTTTTTTTTTTTTCCGTCCCATTTATTATCTTCGC
CCGATTCTTTCTCTAGCTCCATCTCTCTTCGTTACCTAGATCCGAGGTCA
CATAGCAGGCGCTCCTCCTTCCCACACAGGACAACATAGAAGTACAGTTT
ACGCTAGTATTCGTAGTAGTAGTATAACAGCCCTGCCTGCTCGATACCGT
AGAAGAAGCGCGTGTGTCCGTTGCGGTCCGCTGAACCACCTGGAACTACA
AGCACTACTACAAGTACTATCATCGTGTACTATAACTACTGTATGTACTC
TATAGAAGAAGCCCCACCTGCTACTACTATATGCGACGTGCAGAATCCTG
GACGACACAAGATAATACCACTACTTACTACGACGTAATCCATGAGCGGA
GCTTACAGCAGCGACGAGGAGGCGGAGGTGGACCAATTTCACGACGAACA
GAGTAAGTGGCGGGGCTTATGACTACGACCATACTATTAGAGAGTTTGCG
AGAATAACAAAATCGATCGTTTTTTTTTTTTTTTTTTTTCGTCCCATTTA
TTATCTTCGCCCTAAATTTAGTATTTCTATCTCCGTGCCCCGCTTCCTCC
TGGCATGGTTATGGCCTGCCGGGTTGGCGAAGCGTGGGGAGGGTCTTTTT
GGCGGGTGTAAGGCCGGACTCACCCTTGAGGAGTGATTCCTTCTTGCTAC
TGACTGGGTCGAGGCTGTTGTGTTAGTGGTGGAGTTGGGTCAACACGGTG
CGATTAGGTACACCCCCCACGACCCGCGGACCCTTGTATTTTCAAGATAA
CCAGCGGTAAAGCACTTCGAGTGCGTTTGGGTGTGGGTGTACGCGGAGGC
AAATCGACATCGTCGCCGTATGCACGACGCTCACAACCTTGATAGAGGGA
GTGTGCGCCGGTGAATCGGCCGAATTCGGCGACAAGGATGGGATGAAGAC
CGTCGTCGTCGACGGGCTGGATAGGGCCTGGTTGAGCCCATCCAGAGCGA
GAGTTTTTTTTTCCAAGACTAGGACCGGAGGTGCAAATAAGAGGAGGTTG
GTATTTTCATGAAGAAGAGGGCAAGGGACACTGGAGGGTAGGGCGGTGGC
GAATTTGTACGCGGAGCCCAGTGACAGAAGACGAGGACGATACTCTCCGA
TAGGGGGCCGGAGTCGCATACGAGATACAGCAGCAGCGGCAGCAGCAGCA
GCAGCAGCAGAAGCGGAACAGCAGGAGTGGGGTAGGACGAGCTGGGCGTC
ATCCTTTCTTTGATTGTGGTGACAGATGCCTCATGACACGTTGTTGATAG
TCGTATGTTTTCATGCTTGACGATTGGACACGCTGCCGAAGCGCGTGAGC
GCGGGTGACTAGACATGCCATACTTTGACGTTGACGTGAGGTATGCCTGA
CTAGATTATAGGGAGATAGATGTACTAAACCAGGTACCTTCTTTGTGCCT
GGTGGCATTCGGTGTTGTTTGTTGCCCGGTACTACTACTACTACTACTAC
TGTCGTTACTGTTGTTGTTTTTCTCGGCTTCTTCATCTCAATACTTCGTT
GTCGTCCTCCATTTCCTCTGCGTGTGTGCGAGAGGATAACTCAAGCAGCA
CTTCAGACAGTTGTACTATATTACTAGCAGATCCCTTGCAGTGACCACCA
CTGACTGCTGTTGCCCAGTGCATCGCTGTGTGTTGGACAGTAATTTCAGG
CAGTGTAGCTGTAGTCATGCCCACATTGTTCGGGTATAGGCAGCACTTCA
GACAGTAAAACTGCGGTACGTATATCCACAGTAGTGATGTATACACTGTA
TGCAGCAGCGGTGGCAGTGGTAACCTATTTGTCGAGGGGCTAGTTTTTAG
TTCATTGTAGTTTGAGCTGCATTCACGTGTCAGCGCAGTGCCAGTGACGC
ATTGCGATGTGTGCCTCTTCTTCATGGGTTGTGGGTCGGGATCCTGGGCT
ATCACCCAGAACCCATCCATAACTTTCTGTTTCTATCGCTATAGGCTTTC
CCAGTCTATGTGATATACATATTGTATCCGGTATGATGGTATGCTCCTTG
CACCTGCTGTGACCACGGGTTCGAGGGATCGGACTAACGTGACGATAATA
ATAATAATAATAATAATAATAAAAAATCTCCAGGCTTTCCCGGTCTGTTT
GATATGTATATGGGTATGATGGTATGAATGCTCCTTGCACCTGCTGTGAC
CACGGGCCCGAGGTATCGGACTAATGTGACGATTAATAAATAATAAATAA
TAAATAAATAAGTATTACTCTAGCTCCATCTCTCTCCGTAACTCAGATGC
TGGGTCACATAGTAGGCGCTCCTCCCTCCTTCCCACTACGGTACGTGCCT
ACATTTTTATCGCGAGAAGAGTGCAGCACTTTCTTCCCTCGTCATTGTTG
GACACCACAAAAATTCAAATTCCCCCGATCGTTGGACCCTTTTTGCCGAA
ACTTTGACCAGAAACAAACAACGAACTTCCAAGATGATGGATATTTTATA
ATTTGAGCATGAAATACTTGGCATTGTTGGATTTCGGGTTTTGGGTTTGA
TTTTGGTTGTGTTTGGTGTCTCCTCGTCTCCTCGCAGTTGTATGTAATGT
GATTTAATTATGGTGATGGCACCGATAACGTGTTACCTTCGGAGTTGTAT
GAGGTGTAAGTGTGTTATGGTGGTAGTGTATTGGTGTATTGGTGAAACTG
ATAACGTCATGTAAGTTTGGTGTGGTAGTGTATTGGTGTATTGGTGACAC
CGATAACGTCGTTGCCTTCGTATCTAGTGTGCGTAGTAAGTGCGAATTCG
CATAGTATAGGTTCAGGTACGAACACATGATTGATGTGAAAATGTCACGC
ATGCACAGTTACTTCCCGTCCCCCTCCGAAAGATTATGATTCAGTGCACA
CGATGATGGGGCCTGTTTCCCAAAATTATCCTGTAGAGCCTGGGACACCC
CAGGGGAGCCACTGCGCGTTCGCGTATCACATAGTGAGGTTGACGATTAT
CCCCTGGCACTGCGTTATGACTTATCTGAGGACCGATAGAATCCGCGCGA
CCGATGTATCACACAGTGAGGTTGACGATTATCCCCTGGCCCCCGAACCA
GTTTGGAACGTCACACGGCTGATGTCTTTGTAAGTAAAAATAACAATATA
CTCGTCGACTATATATCGTACGCTGTACGGTCAGTGTGAGATGTTGCTCG
TACAGTTTTTGATGTGCTGCTGTGTGGCAGCTGCGTTGCTGCTACAAGTA
CCACTACTGCTACTCATGTACTACTGTTGTTGTGTGGTGTGTTGTGCTAT
AAATATGTGCCTGCGTTGTCTGTGCGGTCTCTGCTACTGCTGCTGCTGTG
CGTATGCGGGGTATGTTTCTGCTGCTGTATCGTCTGTGCTGTTTTTACAA
TTGGCTGGTTGTGTGTGCGTTTTGCAGCCTGTGTATACTATAAATAATAC
TACTACTTTTGTGCTACTACTACTGTTGTATACCTGGTACTGTACTACTA
CTACAGTAAGTAGTTGTATACCTTTAAAGTAAGATTTAAAATTGTGCTTG
TGTCGTTTTGGGGGCCCCTCTTCTTTTGGTCTCTATGTCGCCTTCTGCTA
CACAAATCATCACAGAAGGATTACGTACGGCATTTATTACATTATTACCA
TCGTCCGTGCGTGCATATTGTTGTGTGTCTGCGTCTGCTCTCCTGCTTCC
TGCTACATGTCCATTTAGCATATACTTCGAAGTACATGTCTGTTGCTAGA
GCATGGATGGGGTGTTCGTGAAAAATCGATCCCCCCTGGTTCTGGTCTCT
GCCATCTGGCTGGTGCTGGTATGCAGCCTCGATGTAACTTTTCGAACGGT
ATTTTTTTTTCGCAAACACGAGAAAATGTATGTGTCGAAGGAATTTGGCC
TTTTTTTTGTACGAGCGATAAATAATGATCGAATTTTTTTTTCCGCAAAC
ACTTTACTCTTGGCATAATTCATTCGGCGGTGATGCCATTTATCGCGGAG
AATATCCGTCTTCTGCTTACGACCCAAGGCAACAAGTCGACAGAGGTGGT
GATGATCATGTGGAGCAGGGGGGTGTACCGCGAGGTGGCGATTGGGTAGA
AGGTCCTGGATGGCGGATGAAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:986238..991609-

>mRNA_D-herbacea_F_contig10.166.1 ID=mRNA_D-herbacea_F_contig10.166.1|Name=mRNA_D-herbacea_F_contig10.166.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=366bp|location=Sequence derived from alignment at D-herbacea_F_contig10:986238..991609- (Desmarestia herbacea DmunF female)
ATGAGCGGAGCTTACAGCAGCGACGAGGAGGCGGAGGTGGACCAATTTCA
CGACGAACAGAATGAGCGGAGCTTACAGCAGCGACGAGGAGGCGGAGGTG
GACCAATTTCACGACGAACAGAAATATCCGTCTTCTGCTTACGACCCAAG
GCAACAAGTCGACAGAGGTGGTGATGATCATGTGGAGCAGGGGGGTGTAC
CGCGAGGTGGCGATTGGGTAGAAGGTCCTGGATGGCGGATGAAGAATATC
CGTCTTCTGCTTACGACCCAAGGCAACAAGTCGACAGAGGTGGTGATGAT
CATGTGGAGCAGGGGGGTGTACCGCGAGGTGGCGATTGGGTAGAAGGTCC
TGGATGGCGGATGAAG
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