mRNA_D-herbacea_F_contig10.159.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI) HSP 1 Score: 328 bits (842), Expect = 6.010e-105 Identity = 171/196 (87.24%), Postives = 183/196 (93.37%), Query Frame = 2
Query: 32 EAFADGGIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKVVGEDDFFADLGISYKDFDMPDEVDDFYEAKEDPDIAKDTGKMRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQ 619
EAFA+ G+GD+ AGE FFESVKTSLPGLDMFDPSVFDIRMVMGVL V+L+AY IF+LFVRKVVGEDDFFADLGISYKDFDMPDEVDD+YEAKE+PDIA D GK+RNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGE+EWHAFQEAE MIS+EIESVQ EADE+EPGWSQSIWPLAMQLRTVLVQRREQ
Sbjct: 4 EAFAEAGMGDDT--AGEGTFFESVKTSLPGLDMFDPSVFDIRMVMGVLACVSLLAYAIFRLFVRKVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLRTVLVQRREQ 197
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA) HSP 1 Score: 213 bits (542), Expect = 8.630e-61 Identity = 106/176 (60.23%), Postives = 139/176 (78.98%), Query Frame = 2
Query: 92 FESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKVVGEDDFFADLGISYKDFDMPDEVDDFYEAKEDPDIAKDTGKMRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQ 619
FE +KTSLP LD+FDPSVFD+RMV+G L + L++Y ++L++ KVV DDF ADLGISY DF++PDE++++YEAKE D +RN LLKRAIADIPII+R+Q EGPG+ N+YQQAMIG+REW A+Q AE +I +EIE VQ EA+E+EPGW Q IW +A +LR L+QR++Q
Sbjct: 31 FEDIKTSLPRLDIFDPSVFDMRMVLGALTLFGLLSYFAYRLYMNKVVAGDDFIADLGISYADFELPDEIEEYYEAKEA--AGDDATALRNPLLKRAIADIPIIMRLQKEGPGMQNLYQQAMIGDREWQAYQAAEALIGEEIEQVQAEAEEIEPGWGQQIWRMASELRQALLQRQQQ 204
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A1Z5KHC6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHC6_FISSO) HSP 1 Score: 118 bits (295), Expect = 9.170e-26 Identity = 78/212 (36.79%), Postives = 115/212 (54.25%), Query Frame = 2
Query: 62 EAGAAGEANFFESVKTSL-PGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKVVGEDDFFADLGISYKDFDMPDEVDDFYEAK--------------EDPDIAKDTGKMR---NALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQTEAMAEKA 643
+AG GE+ F ++ + + P D DP+ + + V+VI L + EDDFFA+L + +P EVD++YE K +DP + T R AL+KRAIADIP++ +Q E G+ +Y Q+M ++W ++Q+AE ++S E+E V+ EADE+EPGWSQSIW AMQ +L QR E E E+A
Sbjct: 24 DAGGEGESFFQDTAQEGISPDADGIDPAFYLLGAAFAVIVIYFLXXRA------KXXXSEDDFFAELDGDKFNLKLPSEVDEYYETKAKCEAAGWEPGQPIKDPKDQQATQPQRLLAQALMKRAIADIPMVQHIQKESSGMNKLYSQSMCSVKQWRSYQQAESLVSQEVEEVRAEADEIEPGWSQSIWRQAMQYHQMLKQRHELEEKQREEA 229
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A7S3L5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5D8_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.340e-22 Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 2
Query: 176 VIVALVAYGIFKLFVRKVVGE-DDFFADLGISYKDFDMPDEVDDFYEAKE-------DPDIAKDTGK---------MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQ 619
V++ ++AY + +K + DDFFA L + +P EVD++Y+ KE +P T + M AL+KRAIADIPI+ +Q E PG+ +Y Q+M E++W A+Q+AE ++S E++ V+ E+D++EPGWSQ IW AMQ +L QR EQ
Sbjct: 66 VVLFVIAYFVINSMRKKDENDGDDFFASLDTEKFNLKLPSEVDEYYKIKEKCESAGWEPGSKPATPQEAANGPHRVMAQALMKRAIADIPILQHIQKESPGMNKLYSQSMCSEKQWRAYQKAEALVSAEVDEVRRESDQIEPGWSQMIWRQAMQYHQMLKQRHEQ 230
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A7S1E5I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5I0_9STRA) HSP 1 Score: 102 bits (255), Expect = 8.300e-21 Identity = 68/192 (35.42%), Postives = 106/192 (55.21%), Query Frame = 2
Query: 95 ESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKVVGEDDFFADLGISYKDFDMPDEVDDFYEAKE-------DPDIAKDTGK----------MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQ 619
E VK ++ GLD P + +++G ++++ LV LF K +DFF +L + +P V+++Y+ K+ +P A G+ M AL+KR IADIPI+ +Q E PG+ +Y Q+M ++W +Q AE ++S E++ V+ EADE+EPGWSQ IW AMQ +L Q+ EQ
Sbjct: 1 EMVKEAMGGLD---PVYY---LIIGTIIVMLLV-----YLFRPKKSEVEDFFDELDGDKFNLKLPAAVEEYYQVKDKCLDAGWEPGTAPTPGQQQAANGPHRVMAQALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRTYQAAEALVSGEVDEVRAEADEIEPGWSQVIWKQAMQYHNMLKQKHEQ 181
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A7S2S0P4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P4_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.060e-20 Identity = 85/228 (37.28%), Postives = 122/228 (53.51%), Query Frame = 2
Query: 35 AFADGGIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKVVGEDD---FFADLGISYKDFDMPDEVDDFYEAKED-PDIAKDTGK---------------MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRRE----QTEAMAEKAAD 649
A AD G G AG G A FE + G D P+++ +V+GVL +V L+ Y ++ R+ +DD FF+DL + ++P VD++YE K+ D + GK + AL+KR IADIP++ +Q E G+ +Y Q+M ++W +Q AE M+S E+E V+ EADE+EPGWSQ IW AMQ +L R E Q AMA K A+
Sbjct: 20 AGADSGDGTFAGEEGAA--FEEMPMGPKGTD---PAIY---LVLGVLAMV-LIWYFLYS---RRSKKDDDDFAFFSDLDGEKFNLNLPAAVDEYYEVKDKCEDNGWEPGKPPTNQQEAASGPHRVLAQALMKRCIADIPLVTHIQKESAGMNKLYSQSMCSVKQWKTYQAAEAMVSAEVEEVRAEADEIEPGWSQVIWRQAMQYHNMLKNRHEIEAKQLAAMASKKAE 235
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A448YU82_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU82_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.450e-20 Identity = 82/220 (37.27%), Postives = 118/220 (53.64%), Query Frame = 2
Query: 50 GIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKV-VGEDDFFADLGISYKDFD--MPDEVDDFYEAKED-----------PDIAKDTGK---MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQTE-AMAEKAADAK 655
G G E AGE E V + G+D P+++ L++ +V ++ L+++K EDD+F+ SY+ F+ +P EVD++Y KE P G M AL+KRAI DIPI+ +Q E G+ +Y Q+M +W A+Q AE M+S E++ V+ EADE+EPGWSQ IW AMQ +L Q+ EQ + A AE AA K
Sbjct: 18 GEGAEGDTAGEGFEEEIVMDEVTGVD---PAIY--------LLVAFVVGAILYLLYLKKSRSNEDDYFS----SYEKFNIKLPAEVDEYYSVKEKCMKAGWEPGKPPTDKNPNGPHRVMAQALMKRAIGDIPIVTFIQKESAGMNKLYSQSMCSVSQWRAYQNAETMVSTEVDEVRAEADEIEPGWSQVIWRQAMQYHGMLKQKHEQEQRAAAETAAKKK 222
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A7S4AC03_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC03_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.250e-20 Identity = 79/225 (35.11%), Postives = 118/225 (52.44%), Query Frame = 2
Query: 50 GIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFV---RKVVGEDDFFADLGISYKDFD--MPDEVDDFYEAKED--------------PDIAKDTGK---MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQTEAMAEKAADAKL 658
G D+AG A A E +P ++ V D + + ++VA V G F F+ R+ E+D+F+ SY+ F+ +P EVD++Y K+ P+ A G M AL+KRAI DIPI+ +Q E G+ +Y Q+M +W A+Q AE M+S E++ V+ EADE+EPGWSQ +W AMQ T+L Q+ E + A + A K+
Sbjct: 16 GAADDAGGAEGATAGEGFDEEVPLME----DVVDAGVDPAIYLLVAFVV-GAFLYFLYLRRQRSNEEDYFS----SYEKFNIKLPAEVDEYYSVKDKCMKAGWSPGKPAAGPEKANPNGPHRVMAQALMKRAIGDIPIVTFIQKEAAGMNKLYSQSMCSVSQWRAYQTAESMVSTEVDEVRAEADEIEPGWSQVVWRQAMQYHTMLKQKHELEQKQAAETAAKKM 231
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: K0T2G4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2G4_THAOC) HSP 1 Score: 103 bits (256), Expect = 2.390e-20 Identity = 81/234 (34.62%), Postives = 122/234 (52.14%), Query Frame = 2
Query: 2 AEEAAANMGGEAFADGGIGDEAGAAGE--------ANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYGIFKLFVRKV-VGEDDFFADLGISYKDFDMPDEVDDFYEAKE-------DPDIAKDTGKMRN-------ALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRREQTEAMA 634
AEEA N G G E GAAGE +F E+ + G+D P+ + ++ V+++ L Y + K RK DDFF++L + +P VD++YE K +P G+ N AL+KR IADIPI+ +Q E G+ +Y Q+M ++W ++Q AE M+S E+E V+ EADE+EPGWSQ++W AMQ ++ Q+ EQ ++ A
Sbjct: 2 AEEATVNPDGSTT----FGSE-GAAGEDVPPNMGGEDFEEAAEEIAKGID---PAFY---LIFAVIIVGGLFLYNLLKK--RKDNANMDDFFSNLDGDKFNIKLPSAVDEYYEVKAKCESDGWEPGQPMANGQPTNHHRLLAQALMKRCIADIPIVTHIQKESQGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEIEPGWSQAVWRQAMQYHNMIKQKEEQAKSQA 222
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Match: A0A1E7F2C2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2C2_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.100e-20 Identity = 77/211 (36.49%), Postives = 114/211 (54.03%), Query Frame = 2
Query: 38 FADGGIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVLVIVALVAYG-IFKLFVRKVVGEDD-FFADLG-ISYKDFDMPDEVDDFYEAKED------------PDIAKDTGK---MRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEREWHAFQEAEKMISDEIESVQGEADEVEPGWSQSIWPLAMQLRTVLVQRRE 616
F D G G E G AGE F + + + DP+++ +++A+V G ++ L+ R EDD +F++ G + K +P EVD++Y KE D + TG M AL+KRAI DIPI+ +Q E PG+ +Y Q+M +W A+Q AE ++S E++ V+ EADE+EPGWSQ IW AMQ +L Q+ E
Sbjct: 16 FEDDGAGAE-GTAGEDGFDGAEEMMEEAVQGIDPAIY---------LLIAIVVGGFLYFLYKRSSRSEDDEYFSNYGKFNIK---LPAEVDEYYAVKEKCINAGWEAGNPPKDKSSVTGPHRVMAQALMKRAIGDIPIVTFIQKESPGMNKLYAQSMCSVSQWRAYQTAEAVVSTEVDEVRSEADEIEPGWSQVIWRQAMQYHNMLKQKHE 213 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig10.159.1 >prot_D-herbacea_F_contig10.159.1 ID=prot_D-herbacea_F_contig10.159.1|Name=mRNA_D-herbacea_F_contig10.159.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=257bp MGGEAFADGGIGDEAGAAGEANFFESVKTSLPGLDMFDPSVFDIRMVMGVback to top mRNA from alignment at D-herbacea_F_contig10:856978..867454- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig10.159.1 ID=mRNA_D-herbacea_F_contig10.159.1|Name=mRNA_D-herbacea_F_contig10.159.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=10477bp|location=Sequence derived from alignment at D-herbacea_F_contig10:856978..867454- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig10:856978..867454- >mRNA_D-herbacea_F_contig10.159.1 ID=mRNA_D-herbacea_F_contig10.159.1|Name=mRNA_D-herbacea_F_contig10.159.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1542bp|location=Sequence derived from alignment at D-herbacea_F_contig10:856978..867454- (Desmarestia herbacea DmunF female)back to top |