mRNA_D-herbacea_F_contig10.155.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.155.1
Unique NamemRNA_D-herbacea_F_contig10.155.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:796154..796753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size600
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.155.1prot_D-herbacea_F_contig10.155.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 796190..796720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.0927212-UTR-D-herbacea_F_contig10:796153..7961891622927399.0927212-UTR-D-herbacea_F_contig10:796153..796189Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 796154..796189 +
1690790148.6320517-UTR-D-herbacea_F_contig10:796153..7961891690790148.6320517-UTR-D-herbacea_F_contig10:796153..796189Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 796154..796189 +
1622927399.1117773-UTR-D-herbacea_F_contig10:796720..7967531622927399.1117773-UTR-D-herbacea_F_contig10:796720..796753Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 796721..796753 +
1690790148.661634-UTR-D-herbacea_F_contig10:796720..7967531690790148.661634-UTR-D-herbacea_F_contig10:796720..796753Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 796721..796753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.1023462-CDS-D-herbacea_F_contig10:796189..7967201622927399.1023462-CDS-D-herbacea_F_contig10:796189..796720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 796190..796720 +
1690790148.644262-CDS-D-herbacea_F_contig10:796189..7967201690790148.644262-CDS-D-herbacea_F_contig10:796189..796720Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 796190..796720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.155.1

>prot_D-herbacea_F_contig10.155.1 ID=prot_D-herbacea_F_contig10.155.1|Name=mRNA_D-herbacea_F_contig10.155.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=177bp
MQPFWLFRRLFCGYNDVQTYTMSTVRWSTGPLVSRSVDRSVYATVLAFQT
FILWIQRRTNVHDVDGLNSMLCVYGYFPLLLALVFFILLSDNVQHMIQPD
IIRLLLHVAAVSTSIPHVALTHPFFPLSLLESSAMTSVYPGASKGASNDN
PLSVKIGRTSFMQAVILLAFLSNKLT*
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mRNA from alignment at D-herbacea_F_contig10:796154..796753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.155.1 ID=mRNA_D-herbacea_F_contig10.155.1|Name=mRNA_D-herbacea_F_contig10.155.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=600bp|location=Sequence derived from alignment at D-herbacea_F_contig10:796154..796753+ (Desmarestia herbacea DmunF female)
GTCGGTCGGTCCGTTGGTCGGTCGATCGGTCTGTGTATGCAACCGTTTTG
GCTTTTCAGACGTTTATTTTGTGGATACAATGACGTACAAACGTACACGA
TGTCGACGGTCCGTTGGTCGACCGGTCCGTTGGTCAGTCGGTCGGTCGAT
CGGTCTGTGTATGCAACCGTTTTGGCTTTTCAGACGTTTATTTTGTGGAT
ACAACGACGTACAAACGTACACGATGTCGACGGTCTCAACAGCATGCTTT
GTGTATACGGCTATTTCCCGTTGTTACTGGCGTTGGTATTTTTTATTTTG
TTGTCTGACAATGTACAGCACATGATTCAACCCGACATTATTCGACTACT
CTTACATGTAGCAGCAGTAAGTACTAGTATTCCTCATGTCGCTCTCACTC
ACCCGTTTTTTCCACTATCCTTGCTCGAAAGCTCCGCAATGACATCCGTT
TACCCAGGCGCTTCCAAAGGGGCATCGAACGACAACCCGCTGTCCGTAAA
AATTGGCCGAACATCGTTCATGCAGGCGGTGATACTTCTTGCCTTTTTGT
CAAATAAATTGACTTAATTGGCATCTTTTCAGGCGAAAACGACGAGTCAT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:796154..796753+

>mRNA_D-herbacea_F_contig10.155.1 ID=mRNA_D-herbacea_F_contig10.155.1|Name=mRNA_D-herbacea_F_contig10.155.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1062bp|location=Sequence derived from alignment at D-herbacea_F_contig10:796154..796753+ (Desmarestia herbacea DmunF female)
ATGCAACCGTTTTGGCTTTTCAGACGTTTATTTTGTGGATACAATGACGT
ACAAACGTACACGATGTCGACGGTCCGTTGGTCGACCGGTCCGTTGGTCA
GTCGGTCGGTCGATCGGTCTGTGTATGCAACCGTTTTGGCTTTTCAGACG
TTTATTTTGTGGATACAACGACGTACAAACGTACACGATGTCGACGGTCT
CAACAGCATGCTTTGTGTATACGGCTATTTCCCGTTGTTACTGGCGTTGG
TATTTTTTATTTTGTTGTCTGACAATGTACAGCACATGATTCAACCCGAC
ATTATTCGACTACTCTTACATGTAGCAGCAGTAAGTACTAGTATTCCTCA
TGTCGCTCTCACTCACCCGTTTTTTCCACTATCCTTGCTCGAAAGCTCCG
CAATGACATCCGTTTACCCAGGCGCTTCCAAAGGGGCATCGAACGACAAC
CCGCTGTCCGTAAAAATTGGCCGAACATCGTTCATGCAGGCGGTGATACT
TCTTGCCTTTTTGTCAAATAAATTGACTTAAATGCAACCGTTTTGGCTTT
TCAGACGTTTATTTTGTGGATACAATGACGTACAAACGTACACGATGTCG
ACGGTCCGTTGGTCGACCGGTCCGTTGGTCAGTCGGTCGGTCGATCGGTC
TGTGTATGCAACCGTTTTGGCTTTTCAGACGTTTATTTTGTGGATACAAC
GACGTACAAACGTACACGATGTCGACGGTCTCAACAGCATGCTTTGTGTA
TACGGCTATTTCCCGTTGTTACTGGCGTTGGTATTTTTTATTTTGTTGTC
TGACAATGTACAGCACATGATTCAACCCGACATTATTCGACTACTCTTAC
ATGTAGCAGCAGTAAGTACTAGTATTCCTCATGTCGCTCTCACTCACCCG
TTTTTTCCACTATCCTTGCTCGAAAGCTCCGCAATGACATCCGTTTACCC
AGGCGCTTCCAAAGGGGCATCGAACGACAACCCGCTGTCCGTAAAAATTG
GCCGAACATCGTTCATGCAGGCGGTGATACTTCTTGCCTTTTTGTCAAAT
AAATTGACTTAA
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