mRNA_D-herbacea_F_contig10.147.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A6H5L3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X2_9PHAE) HSP 1 Score: 172 bits (435), Expect = 8.670e-50 Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 1
Query: 238 RGLKGKSNVCSADTDE--GQERT--ARLVITHSS----------YLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRESTNGFKCLARKGTVGQEVFIGTTKMGIESVKAALNRAAGFDLEKGGSRREQKMGRKR 636
RGLKG+ + C T E ER ARLV+THSS Y+DGL+PLLDRF+ DPDA S+++V+PGR+Y GR+ELFKM+VR++TNGFK LARKGT+GQEVFI TTKM + VKAALNRAAGFDLEKGGSRREQK GRKR
Sbjct: 49 RGLKGQPD-CDVKTHELVAPERPTPARLVVTHSSECAPARAYPCYMDGLIPLLDRFIADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDLGDVKAALNRAAGFDLEKGGSRREQKAGRKR 194
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: D7FP95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP95_ECTSI) HSP 1 Score: 158 bits (400), Expect = 9.120e-46 Identity = 76/102 (74.51%), Postives = 91/102 (89.22%), Query Frame = 1
Query: 331 LDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRESTNGFKCLARKGTVGQEVFIGTTKMGIESVKAALNRAAGFDLEKGGSRREQKMGRKR 636
+DGL+PLLDRF+ DPDA S+++V+PGR+Y GR+ELFKM+VR++TNGFK LARKGT+GQEVFI TTKM ++ VKAALNRAAGFDLEKGGSRREQK GRKR
Sbjct: 1 MDGLIPLLDRFITDPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMNLDDVKAALNRAAGFDLEKGGSRREQKAGRKR 102
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A4P7ZS28_9SYNE (Uncharacterized protein n=3 Tax=Synechococcaceae TaxID=1890426 RepID=A0A4P7ZS28_9SYNE) HSP 1 Score: 65.1 bits (157), Expect = 5.310e-10 Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRES-TNGFKCLARKGTVGQEVFIGTTKMGIESVKAALNRA 576
RLVITHS+YL+GL+PLL R V DP +I T+ P + GR+ ++ V T G+K +AR+G+ QEVF+ T + E+++ + +A
Sbjct: 3 RLVITHSTYLEGLIPLLKRLVRDP----AIDTITPAVIARVKGRSPELRLRVSTPITGGWKLVARRGSSAQEVFV-VTALNAEALEERIGQA 89
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A354B132_9CYAN (Uncharacterized protein n=1 Tax=Synechococcales bacterium UBA10510 TaxID=2055795 RepID=A0A354B132_9CYAN) HSP 1 Score: 63.5 bits (153), Expect = 2.000e-9 Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVREST-NGFKCLARKGTVGQEVFIGTTKMGIESVKAALNRAAG 582
R+VITHS+YL+GL+PLL R + P I TV P + GRA ++ V G+K LAR+G QEVF+ TT+ E ++ L++ AG
Sbjct: 3 RVVITHSTYLEGLIPLLRRLAQQP----GIDTVTPAVISRVKGRAASLRLRVSAPILGGYKLLARRGNSAQEVFV-TTQWSRELLQEQLDQLAG 91
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A4P5V908_9CYAN (Uncharacterized protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5V908_9CYAN) HSP 1 Score: 63.5 bits (153), Expect = 2.160e-9 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRES-TNGFKCLARKGTVGQEVFIGT 531
RLVITHS+YL+GL+PLL R V+DP +I T+ P + GRA ++ V + G+K +AR+G+ QEVF+ T
Sbjct: 3 RLVITHSTYLEGLIPLLKRLVKDP----AIDTITPAVIARVRGRAPELRLRVSTPISGGWKLVARRGSSAQEVFVVT 75
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: UPI001BDC8AB9 (DUF2103 domain-containing protein n=1 Tax=Synechococcus sp. LA31 TaxID=2741953 RepID=UPI001BDC8AB9) HSP 1 Score: 63.2 bits (152), Expect = 2.700e-9 Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRES-TNGFKCLARKGTVGQEVFIGTTKMGIESVKAALNRA 576
RLVITHS+YL+GL+PLL V DP +I T+ P + GRA ++ V T G+K +AR+G+ QEVF+ T + E ++A + +A
Sbjct: 3 RLVITHSTYLEGLIPLLKCLVRDP----AIDTITPAVIARVRGRAPELRLRVSTPITGGWKLVARRGSSAQEVFV-VTGLTSEDLQAKIQQA 89
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A0A2BME1_9CYAN (Uncharacterized protein n=2 Tax=Prochlorococcus TaxID=1218 RepID=A0A0A2BME1_9CYAN) HSP 1 Score: 63.2 bits (152), Expect = 3.130e-9 Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 1
Query: 295 RTARLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSV-RESTNGFKCLARKGTVGQEVFIGTTKMGIE---SVKAALN 570
R RLV+THSSY++GL+ LL + V D + I T+ PG + G++ FK+ + RE G+K ARKG QEV+I T IE +++ LN
Sbjct: 7 RLGRLVLTHSSYVEGLISLLKKIVNDKN----IKTITPGAITRVKGKSVSFKLVISREVKGGYKLNARKGRSAQEVYILTDYSKIELTEKIESLLN 98
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A326QPZ9_9CYAN (Uncharacterized protein n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QPZ9_9CYAN) HSP 1 Score: 61.6 bits (148), Expect = 9.850e-9 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRESTNG-FKCLARKGTVGQEVFIGTT 534
R+VITHS+Y++GL+P+L R A + TV P + GR+ + ++ V G FK LARKGT QEVF+ TT
Sbjct: 3 RVVITHSTYIEGLIPVLRRLA----AGDGVDTVTPAVITRVKGRSPVLRLKVSAPIRGGFKLLARKGTTAQEVFVVTT 76
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A4P5VRL3_9CYAN (Uncharacterized protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VRL3_9CYAN) HSP 1 Score: 61.2 bits (147), Expect = 1.330e-8 Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVRES-TNGFKCLARKGTVGQEVFIGT 531
RLVITHS+Y++GL+PLL R E+ I TV P + GR ++ + T GFK LAR+GT QEVF+ T
Sbjct: 3 RLVITHSTYVEGLIPLLKRLAEE----VGIETVTPAVICRVRGRCVGLRLRISTPITGGFKLLARRGTSAQEVFVVT 75
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Match: A0A7G8DCL8_9SYNE (Uncharacterized conserved metal-binding protein (DUF2103) n=7 Tax=Synechococcales TaxID=1890424 RepID=A0A7G8DCL8_9SYNE) HSP 1 Score: 61.2 bits (147), Expect = 1.330e-8 Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 304 RLVITHSSYLDGLVPLLDRFVEDPDASCSITTVVPGRMYACNGRAELFKMSVR-ESTNGFKCLARKGTVGQEVFIGT 531
RLVITHS+Y++GL+P L DP+ I T+ PG + G + ++ V T GFK LARKGT QEVF+ T
Sbjct: 3 RLVITHSTYVEGLIPWLKVLARDPE----IQTITPGVISRVRGHSSGLQLRVSIPVTGGFKMLARKGTSAQEVFVVT 75 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig10.147.1 >prot_D-herbacea_F_contig10.147.1 ID=prot_D-herbacea_F_contig10.147.1|Name=mRNA_D-herbacea_F_contig10.147.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=169bp MILRLPGLQQCFQQRLGLIGNQGHNMNAGVNTLLWRGLKGKSNVCSADTDback to top mRNA from alignment at D-herbacea_F_contig10:693392..698237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig10.147.1 ID=mRNA_D-herbacea_F_contig10.147.1|Name=mRNA_D-herbacea_F_contig10.147.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4846bp|location=Sequence derived from alignment at D-herbacea_F_contig10:693392..698237+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig10:693392..698237+ >mRNA_D-herbacea_F_contig10.147.1 ID=mRNA_D-herbacea_F_contig10.147.1|Name=mRNA_D-herbacea_F_contig10.147.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1014bp|location=Sequence derived from alignment at D-herbacea_F_contig10:693392..698237+ (Desmarestia herbacea DmunF female)back to top |