mRNA_D-herbacea_F_contig10.145.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.145.1
Unique NamemRNA_D-herbacea_F_contig10.145.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:666178..666555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.0581102-CDS-D-herbacea_F_contig10:666177..6665551622927399.0581102-CDS-D-herbacea_F_contig10:666177..666555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 666178..666555 -
1690790148.6237934-CDS-D-herbacea_F_contig10:666177..6665551690790148.6237934-CDS-D-herbacea_F_contig10:666177..666555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 666178..666555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.145.1prot_D-herbacea_F_contig10.145.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 666178..666555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.145.1

>prot_D-herbacea_F_contig10.145.1 ID=prot_D-herbacea_F_contig10.145.1|Name=mRNA_D-herbacea_F_contig10.145.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=126bp
WARLNGCPWDERTCQKAAQGGHLGVLQWARANGCPWDEETCAAAAAGGRL
DILAWAREKGCPWDDSTCEKAAEGGHLRVLQWAREWGCPWKEDTCREASR
RGHLGVLQWARENGCPWDSGTCVVAA
back to top

mRNA from alignment at D-herbacea_F_contig10:666178..666555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.145.1 ID=mRNA_D-herbacea_F_contig10.145.1|Name=mRNA_D-herbacea_F_contig10.145.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=378bp|location=Sequence derived from alignment at D-herbacea_F_contig10:666178..666555- (Desmarestia herbacea DmunF female)
TGGGCGCGCTTGAACGGGTGTCCTTGGGACGAGAGGACGTGCCAGAAGGC
GGCGCAGGGGGGCCACCTCGGGGTTCTCCAGTGGGCCCGAGCGAACGGGT
GCCCGTGGGACGAGGAGACTTGCGCTGCGGCCGCGGCGGGGGGAAGGTTG
GACATTCTCGCGTGGGCGAGGGAGAAGGGGTGTCCGTGGGATGACAGCAC
CTGCGAGAAGGCGGCGGAGGGGGGTCACCTGCGCGTGCTGCAGTGGGCGA
GGGAATGGGGGTGCCCCTGGAAGGAGGACACGTGTCGCGAGGCGTCGCGA
CGGGGGCATCTGGGCGTGCTGCAATGGGCGCGCGAGAACGGGTGCCCCTG
GGACAGCGGTACGTGCGTCGTGGCAGCG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig10:666178..666555-

>mRNA_D-herbacea_F_contig10.145.1 ID=mRNA_D-herbacea_F_contig10.145.1|Name=mRNA_D-herbacea_F_contig10.145.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=756bp|location=Sequence derived from alignment at D-herbacea_F_contig10:666178..666555- (Desmarestia herbacea DmunF female)
TGGGCGCGCTTGAACGGGTGTCCTTGGGACGAGAGGACGTGCCAGAAGGC
GGCGCAGGGGGGCCACCTCGGGGTTCTCCAGTGGGCCCGAGCGAACGGGT
GCCCGTGGGACGAGGAGACTTGCGCTGCGGCCGCGGCGGGGGGAAGGTTG
GACATTCTCGCGTGGGCGAGGGAGAAGGGGTGTCCGTGGGATGACAGCAC
CTGCGAGAAGGCGGCGGAGGGGGGTCACCTGCGCGTGCTGCAGTGGGCGA
GGGAATGGGGGTGCCCCTGGAAGGAGGACACGTGTCGCGAGGCGTCGCGA
CGGGGGCATCTGGGCGTGCTGCAATGGGCGCGCGAGAACGGGTGCCCCTG
GGACAGCGGTACGTGCGTCGTGGCAGCGTGGGCGCGCTTGAACGGGTGTC
CTTGGGACGAGAGGACGTGCCAGAAGGCGGCGCAGGGGGGCCACCTCGGG
GTTCTCCAGTGGGCCCGAGCGAACGGGTGCCCGTGGGACGAGGAGACTTG
CGCTGCGGCCGCGGCGGGGGGAAGGTTGGACATTCTCGCGTGGGCGAGGG
AGAAGGGGTGTCCGTGGGATGACAGCACCTGCGAGAAGGCGGCGGAGGGG
GGTCACCTGCGCGTGCTGCAGTGGGCGAGGGAATGGGGGTGCCCCTGGAA
GGAGGACACGTGTCGCGAGGCGTCGCGACGGGGGCATCTGGGCGTGCTGC
AATGGGCGCGCGAGAACGGGTGCCCCTGGGACAGCGGTACGTGCGTCGTG
GCAGCG
back to top