mRNA_D-herbacea_F_contig10.139.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.139.1
Unique NamemRNA_D-herbacea_F_contig10.139.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:461206..461682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.139.1prot_D-herbacea_F_contig10.139.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 461247..461555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.0043721-UTR-D-herbacea_F_contig10:461205..4612461622927399.0043721-UTR-D-herbacea_F_contig10:461205..461246Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 461206..461246 +
1690790148.5982301-UTR-D-herbacea_F_contig10:461205..4612461690790148.5982301-UTR-D-herbacea_F_contig10:461205..461246Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 461206..461246 +
1622927399.0259533-UTR-D-herbacea_F_contig10:461555..4616821622927399.0259533-UTR-D-herbacea_F_contig10:461555..461682Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 461556..461682 +
1690790148.6153643-UTR-D-herbacea_F_contig10:461555..4616821690790148.6153643-UTR-D-herbacea_F_contig10:461555..461682Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig10 461556..461682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927399.01428-CDS-D-herbacea_F_contig10:461246..4615551622927399.01428-CDS-D-herbacea_F_contig10:461246..461555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 461247..461555 +
1690790148.6073272-CDS-D-herbacea_F_contig10:461246..4615551690790148.6073272-CDS-D-herbacea_F_contig10:461246..461555Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 461247..461555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.139.1

>prot_D-herbacea_F_contig10.139.1 ID=prot_D-herbacea_F_contig10.139.1|Name=mRNA_D-herbacea_F_contig10.139.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=103bp
MKIPTASYFAPLVLVLKSENSRSKWAQPGPIHPGRRRSSSHPFRRIPPIH
RRTLPRSRLRASAFGDDVDLPPRTPAPICTRNNALPLVILKIQRSAGRGG
CT*
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mRNA from alignment at D-herbacea_F_contig10:461206..461682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.139.1 ID=mRNA_D-herbacea_F_contig10.139.1|Name=mRNA_D-herbacea_F_contig10.139.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=477bp|location=Sequence derived from alignment at D-herbacea_F_contig10:461206..461682+ (Desmarestia herbacea DmunF female)
CGCCACCGCCCTACTATCCAGTGCCCCCTGCCCTGTTCTTCATGAAAATA
CCAACCGCCTCTTATTTTGCGCCTCTGGTCCTGGTCTTGAAAAGCGAAAA
CTCTCGCTCTAAATGGGCTCAACCAGGCCCTATCCATCCCGGACGACGAC
GGTCTTCATCCCATCCTTTTCGTCGAATCCCGCCGATTCACCGGCGCACG
CTCCCTCGATCAAGGTTACGAGCGTCGGCTTTCGGCGACGATGTCGATTT
GCCTCCACGTACACCCGCACCAATATGCACTCGAAATAATGCTTTACCGC
TGGTCATCTTGAAAATTCAAAGGTCCGCGGGTCGTGGGGGATGTACCTAG
TCGCACCGTGTTGACCCAACTCCACTACTAACACTACGGCCTCGGCCCAA
TCAGTAGCAAAAAGGAATCACTCCTCAAGAGTGAGTCATGCCTTACACCC
GCCAGAAAGACCGTCCCCACGCGTTGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:461206..461682+

>mRNA_D-herbacea_F_contig10.139.1 ID=mRNA_D-herbacea_F_contig10.139.1|Name=mRNA_D-herbacea_F_contig10.139.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=618bp|location=Sequence derived from alignment at D-herbacea_F_contig10:461206..461682+ (Desmarestia herbacea DmunF female)
ATGAAAATACCAACCGCCTCTTATTTTGCGCCTCTGGTCCTGGTCTTGAA
AAGCGAAAACTCTCGCTCTAAATGGGCTCAACCAGGCCCTATCCATCCCG
GACGACGACGGTCTTCATCCCATCCTTTTCGTCGAATCCCGCCGATTCAC
CGGCGCACGCTCCCTCGATCAAGGTTACGAGCGTCGGCTTTCGGCGACGA
TGTCGATTTGCCTCCACGTACACCCGCACCAATATGCACTCGAAATAATG
CTTTACCGCTGGTCATCTTGAAAATTCAAAGGTCCGCGGGTCGTGGGGGA
TGTACCTAGATGAAAATACCAACCGCCTCTTATTTTGCGCCTCTGGTCCT
GGTCTTGAAAAGCGAAAACTCTCGCTCTAAATGGGCTCAACCAGGCCCTA
TCCATCCCGGACGACGACGGTCTTCATCCCATCCTTTTCGTCGAATCCCG
CCGATTCACCGGCGCACGCTCCCTCGATCAAGGTTACGAGCGTCGGCTTT
CGGCGACGATGTCGATTTGCCTCCACGTACACCCGCACCAATATGCACTC
GAAATAATGCTTTACCGCTGGTCATCTTGAAAATTCAAAGGTCCGCGGGT
CGTGGGGGATGTACCTAG
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