mRNA_D-herbacea_F_contig10.135.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig10.135.1
Unique NamemRNA_D-herbacea_F_contig10.135.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig10.135.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.340e-59
Identity = 109/187 (58.29%), Postives = 129/187 (68.98%), Query Frame = 1 
Query:    1 MPLSRVRQFCGVEGGPTPRDAVLLKLVLVIHEGIAWTTGGPFHRHYRQEVIPTALVLYSSLAQDTLEGVDLEVGHTLPEGMFNITGTVRPSWPRWGGNQPSSASPHGNSHSHEGGA-RDSVSVEGGSTR--------GVAGESRERDRMGRRVD-VRGFVRGPWMVFRVLREDYLEFYRKQESALGQ 531
            MPLSR+R F GV+GGPTPRDAVLLK +L++HEGIAW    P +R+YR+E+IPTAL LY+SLAQD LEGVDLEVGHTLPE +F +TGT RPSWPRWGG+ PS+A+        EGGA R S  V+G  T         G     RE    GR +   R F+ GPW+VFRV R DYLEFYR Q + L Q
Sbjct:    1 MPLSRIRAFIGVDGGPTPRDAVLLKSLLIVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGS-PSAAT--ATPRLIEGGAGRGSNDVDGPDTTRNNGSGGTGFGRSPREASGRGRGMTRAREFLPGPWVVFRVARGDYLEFYRDQAAVLDQ 184
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BLAST of mRNA_D-herbacea_F_contig10.135.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.040e-51
Identity = 108/187 (57.75%), Postives = 126/187 (67.38%), Query Frame = 1 
Query:    1 MPLSRVRQFCGVEGGPTPRDAVLLKLVLVIHEGIAWTTGGPFHRHYRQEVIPTALVLYSSLAQDTLEGVDLEVGHTLPEGMFNITGTVRPSWPRWGGNQPSSASPHGNSHSHEGGA-RDSVSVE--------GGSTRGVAGESRER-DRMGRRVDVRGFVRGPWMVFRVLREDYLEFYRKQESALGQ 531
            MPLSR+R F GV+GGPTPRDAVLLK +LV+HEGIAW    P +R+YR+E+IPTAL LY+SLAQD LEGVDLEVGHTLPE +F +TGT RPSWPRWGG+ PS+A+        EGGA R S  V         G    G     RE  DR    +  R F+ GPW+VF V R DYLEFYR Q + L Q
Sbjct:  733 MPLSRIRAFIGVDGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGS-PSAAT--ATPRLIEGGAGRGSNDVSDPNIRRSNGSGGTGFGRSPREASDRGCVMMRAREFLPGPWVVFHVARADYLEFYRDQAAVLDQ 916
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig10.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI1.340e-5958.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE1.040e-5157.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig10contigD-herbacea_F_contig10:390605..392498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003450.1
Exons3
Model size561
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig10.135.1prot_D-herbacea_F_contig10.135.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig10 390605..392498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927401.5352974-CDS-D-herbacea_F_contig10:390604..3908511622927401.5352974-CDS-D-herbacea_F_contig10:390604..390851Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 390605..390851 -
1690790150.513635-CDS-D-herbacea_F_contig10:390604..3908511690790150.513635-CDS-D-herbacea_F_contig10:390604..390851Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 390605..390851 -
1622927401.5489273-CDS-D-herbacea_F_contig10:390923..3911061622927401.5489273-CDS-D-herbacea_F_contig10:390923..391106Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 390924..391106 -
1690790150.527431-CDS-D-herbacea_F_contig10:390923..3911061690790150.527431-CDS-D-herbacea_F_contig10:390923..391106Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 390924..391106 -
1622927401.5618389-CDS-D-herbacea_F_contig10:392367..3924981622927401.5618389-CDS-D-herbacea_F_contig10:392367..392498Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 392368..392498 -
1690790150.5354855-CDS-D-herbacea_F_contig10:392367..3924981690790150.5354855-CDS-D-herbacea_F_contig10:392367..392498Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig10 392368..392498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig10.135.1

>prot_D-herbacea_F_contig10.135.1 ID=prot_D-herbacea_F_contig10.135.1|Name=mRNA_D-herbacea_F_contig10.135.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=187bp
MPLSRVRQFCGVEGGPTPRDAVLLKLVLVIHEGIAWTTGGPFHRHYRQEV
IPTALVLYSSLAQDTLEGVDLEVGHTLPEGMFNITGTVRPSWPRWGGNQP
SSASPHGNSHSHEGGARDSVSVEGGSTRGVAGESRERDRMGRRVDVRGFV
RGPWMVFRVLREDYLEFYRKQESALGQVCLQDDMLC*
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mRNA from alignment at D-herbacea_F_contig10:390605..392498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig10.135.1 ID=mRNA_D-herbacea_F_contig10.135.1|Name=mRNA_D-herbacea_F_contig10.135.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1894bp|location=Sequence derived from alignment at D-herbacea_F_contig10:390605..392498- (Desmarestia herbacea DmunF female)
ATGCCGCTGAGTCGCGTCCGTCAATTCTGCGGGGTCGAGGGGGGACCCAC
GCCTCGGGACGCGGTGCTCCTGAAATTGGTACTGGTGATCCACGAGGGGA
TCGCTTGGACCACGGGTGGCCCTTTTCACAGGTAGGCAATTGCTTGCGGT
GTACCAGGGATAGCCCATTGATTGTTTGGTTAGTTGATTGGTTGATTCAT
TGGTTGTGTGATCGATTTATTGATTGATTGATTGATTGATTGTTTGATTA
GCTGGTTGGTTGATTGGTTGGATAATGTTTGATCGTTTGGCTGATTGGTA
TATCGATTATTGACCGGGTAATGGATGATTGGATGGTTGATGGATTGATT
GAGTGGTTGATTACTATATTGATTGGTTGATTGATCGGTTGATTGGTTTA
CTGATTGATTGTTTGGTTGCTTGCTTGCTTGATTGCTTGCTTGATTGTGT
TTACACAAACTGACTTTCACAATCGAGGCGACTCCACCCATTGTCACTAA
ACGGAGAAGGCATAACAAAACCTGAACCACGGAAGGAGAATATAATTCGA
AGTTCAATACATTTACGATGAACAGATTAGCCTGTTCCCTAAGCGCGAAG
CGTCGAACCACATTCCTAACGTACATCGATACTACGTCACCGGGACGCCA
AGAGGAACGAAATATCGGTATTGTACGCACTTGAACCATGAAAACGCCAT
GTACAAAACATAACTAGATATATGTACGAAATAGATGTTCTTGAAACGTG
CTGACACCAAGACTTTTTTTTTCTTCATATCATATCGTCTCCGTCCGTCC
GAAAATTAATGAATTTCTATTTTATACTTCGAAGTATACATATATGTGAT
ATTAATAGGATATTATACATTATCGTTTGCGTTTTAGAAATGACTTATTT
GCGCGCAAATTTCTCTCCAATAGGGGTTGTATCATTAACGCCCCCCCTGC
TGGGAAAAACAGGGTCTTCCGAGGGTTTCCAGTAAGGAAGTTAGAAATGA
TATTATTGAGAGATGGGAAAAATGAAAATTAATTATTGAAGATGACATCT
TTTTCTGTGTCGTCTTCGCTGTTGTTGTTGCAGAAAGCGCGAGAGCGCGA
ATAAACAAAATTCAATGAAAAAAGTCGACTATACGGTAGTGGGAAAGGAT
GGAGAGGTTGCAGTGAATTCTTCACGTAGACACAAGACGTATAAGGGTCG
GTGCATATTTTGTTTATTTTCAATGTTGTAATGATATCATATCATACTAT
TATAGGCTTAAGTCCTGGTGCGAGGTCAATCGTTGGTCAACGGCTGCAGC
ATGCATCTTCGTCGGTAGTACAATGGTCCATGGTTGATCGACCTCCCTTC
CTCCCTCCCTCCCTCATCCCTCCATTTGTACATGTCGGCCAGACACTACA
GACAAGAAGTAATCCCCACCGCCCTGGTGCTCTACTCCTCTCTGGCGCAA
GACACTCTAGAGGGCGTCGACCTCGAGGTGGGACACACCCTGCCGGAGGG
CATGTTCAACATCACCGGCACGGTCCGGCCTTCTTGGCCTCGCTGGGGCG
GCAACCAACCTTCTTCCGCCTCTCCGTCGACCCCCGACCGCCTCAGCTGG
CGAAGCACCTCCAACAATATCCGTAACAGTAACAGTCACAGTAGCAGTCA
CGGTAACAGTCACAGTCACGAAGGTGGCGCTAGGGACAGTGTTAGCGTTG
AGGGGGGAAGCACTCGAGGAGTTGCTGGAGAGAGTAGGGAACGTGATCGG
ATGGGGAGGAGGGTGGATGTACGAGGGTTCGTGCGCGGGCCATGGATGGT
CTTCCGCGTGCTGCGGGAGGACTACCTGGAGTTTTATAGAAAGCAGGAGT
CAGCGCTCGGCCAAGTCTGCCTGCAGGATGACATGCTGTGCTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig10:390605..392498-

>mRNA_D-herbacea_F_contig10.135.1 ID=mRNA_D-herbacea_F_contig10.135.1|Name=mRNA_D-herbacea_F_contig10.135.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1122bp|location=Sequence derived from alignment at D-herbacea_F_contig10:390605..392498- (Desmarestia herbacea DmunF female)
ATGCCGCTGAGTCGCGTCCGTCAATTCTGCGGGGTCGAGGGGGGACCCAC
GCCTCGGGACGCGGTGCTCCTGAAATTGGTACTGGTGATCCACGAGGGGA
TCGCTTGGACCACGGGTGGCCCTTTTCACAGATGCCGCTGAGTCGCGTCC
GTCAATTCTGCGGGGTCGAGGGGGGACCCACGCCTCGGGACGCGGTGCTC
CTGAAATTGGTACTGGTGATCCACGAGGGGATCGCTTGGACCACGGGTGG
CCCTTTTCACAGACACTACAGACAAGAAGTAATCCCCACCGCCCTGGTGC
TCTACTCCTCTCTGGCGCAAGACACTCTAGAGGGCGTCGACCTCGAGGTG
GGACACACCCTGCCGGAGGGCATGTTCAACATCACCGGCACGGTCCGGCC
TTCTTGGCCTCGCTGGGGCGGCAACCAACCTTCTTCCGCCTCTCCACACT
ACAGACAAGAAGTAATCCCCACCGCCCTGGTGCTCTACTCCTCTCTGGCG
CAAGACACTCTAGAGGGCGTCGACCTCGAGGTGGGACACACCCTGCCGGA
GGGCATGTTCAACATCACCGGCACGGTCCGGCCTTCTTGGCCTCGCTGGG
GCGGCAACCAACCTTCTTCCGCCTCTCCTCACGGTAACAGTCACAGTCAC
GAAGGTGGCGCTAGGGACAGTGTTAGCGTTGAGGGGGGAAGCACTCGAGG
AGTTGCTGGAGAGAGTAGGGAACGTGATCGGATGGGGAGGAGGGTGGATG
TACGAGGGTTCGTGCGCGGGCCATGGATGGTCTTCCGCGTGCTGCGGGAG
GACTACCTGGAGTTTTATAGAAAGCAGGAGTCAGCGCTCGGCCAAGTCTG
CCTGCAGGATGACATGCTGTGCTGATCACGGTAACAGTCACAGTCACGAA
GGTGGCGCTAGGGACAGTGTTAGCGTTGAGGGGGGAAGCACTCGAGGAGT
TGCTGGAGAGAGTAGGGAACGTGATCGGATGGGGAGGAGGGTGGATGTAC
GAGGGTTCGTGCGCGGGCCATGGATGGTCTTCCGCGTGCTGCGGGAGGAC
TACCTGGAGTTTTATAGAAAGCAGGAGTCAGCGCTCGGCCAAGTCTGCCT
GCAGGATGACATGCTGTGCTGA
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