mRNA_D-herbacea_F_contig1.15.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: A0A6H5JGP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP4_9PHAE) HSP 1 Score: 408 bits (1048), Expect = 1.530e-110 Identity = 473/1293 (36.58%), Postives = 584/1293 (45.17%), Query Frame = 3
Query: 3453 LLRRVQAGPPNGRVSVWEPTTGNILSGLKAPTRKRLAGFLNVSSHYRVPRCPTIALFFLLFLAYSPSMYRSHAFAIIHMIPVCFVASQPSQEPPPAPAPPSSEVVAVPEVKREAETPRCRPLDRKAWVKGQAVIKEMRQMLDKENVPHRGALKTMLLKVRDLLLGLRQLPNARNSAAADVLLLLAYTKTFAKPTTYATVYGDPVQVQAKELGNNVPRAVLRRYKKETRAAAKWLECKDARAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPLPQGRGTLLASRRGQKKSTGARLKDSRTDPXXXXXXXXXXGGVKQAGSAKAALXXXXXXXXXGKSDGVTATPMAVVDTETSEGDAVVXXXXXXXXXXXXXXXGDFPVPETPKSGKSGDGARETPGSGVCGGGNSRGALSERESDSGTR-------------------------GATGAEGTKSSGGKARKGQRGKQRPKCKPARRPAPVKPVGAPRT-DGCLEGHEVVHKYRPVAGPTYVLAQLLQWHNHGEGGNFNQAFDDNLRGCVRLPDVLEAYEGTGTYDRDQRVLLVNHLADAEQRKHPWPAKLDSAFGIEDPEETAAAATESGSKTGTMRSSGETPGAPDGATAAGDRGGDAGEVLSPKGGSMPGRGXXXXXXXXXXXXXXXXXRFGNRKRAVAGAAAEAPGGIVLLGSPMVDATLEDTQGLRKVIEVLKKETGMSTGGFQIREASG----EDGPQGVIPVPWAQCELCCTWRRLPWYVVPSRDLKDQFFCKDNKWNPEEQICDVRQALEEEDPSSMSVEFSDAVLVTKFEVGMWLDVYCPRMMQWFPAQVIKITKL--RIRVHFHKWQARFDEWLAKDDKARISSVHTHTRPVEVTREWRLRGMTGSAGSIANASSASVNSSAXXXXDSGTDSXXXXXXXXXXXXXXXXRGSSSGGAKPKTAAP-TDFVYAR-VGKSSLSREE--LTREERTALRQKLPQAPPSLAAQ--RAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAETDEGGVDDAGITFAEKAALAAAAADRVDHEAAEKRMLQNTWARENAGGARXXXXXXXXQAEALLQNGEAPIERDAADAAQTELSGLAMAFTPSPAARGAAESWRSGSDAEVDESAQGVRGHQPVRSPWPGQAATGPRIDLNSCSRSASYRXXXXXXXXXXDHRSPGGGVKRKLPSPLSSRMITPQQAMEHHNGLSPILPDPASSPTESAGD 7217
L R + G P+ R+ +W+P G++AP RK L F+ R P L+ P+ S +P+ S+PS A PPS + A+T RPLDRKA+ G+ VI +++ LD + V H+ LK LL+VR+LLLGLR LPNARN AAADVLLLLA+TKTFA+PT YATV GDPV V AKE+GNNVP+AVL RYK E R A + + XXXXXXXXXXXXXXXXXXXXXX P P XXXXXXXXXX XXXXXXXXX XXXXXXXXXXXXXXX + G++G K G +R + P+ DGCL+G EV+H+Y PV+GP +VLAQLLQWHN G+GGN N+ FDD LRGCVRLPDVLEAYEGTG+Y DQR LLV HL D EQRKHPWPAKLD AFG EDPEE AA G+ + SPKG PG G G A AG AA A GG+VLLGSPMVDATLEDTQGL++VIE+LK+ETG+S G AS EDGPQ P PWAQC+ C WRR+PW++ P L + + C++N W+PE CDV + ++EED + + S V V W+DV+C + +W+PA+VIK + R+ V F W R+++W++K K RI VHTHT+ V R+W L M G GS X G+D G KTA P +DFVY KSSLSREE + R RT P PP+ + R XXXXXXXXX A D G D+ G + + A+AAADR H AE+ T + ++ GA XXXXXXX LL+ GE P ++D AD A++ LSGLA AF SP R A E+W+ D A+ G A G R L +R R G + SPLSSRM+TP +M++H SP + D A+ TE+ GD
Sbjct: 2117 LQRILSGGHPDDRIYMWDPVRETKSYGVRAPKRKTLPEFIK--------RHPLYELYVNQDSRAKPAASGS--------LPLAASGSRPSAXAAAAGPPPSKHPA---QETSPAKTTAIRPLDRKAYNAGRDVIMKIQSKLDNDVVAHKAHLKKALLEVRELLLGLRTLPNARNKAAADVLLLLAHTKTFAEPTNYATVVGDPVHVLAKEIGNNVPKAVLARYKTEKRLAMQKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGAVDPPSSPPCTPSSPSRPDAGGDGVGCESDGAASTPVKPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPASVGSKGKKQGGWN----KRARXXXXXXXXXXXXXXXXXQGPKPGDGCLKGDEVIHEYWPVSGPHFVLAQLLQWHNDGDGGNPNEPFDDKLRGCVRLPDVLEAYEGTGSYTNDQRKLLVTHLEDPEQRKHPWPAKLDVAFGKEDPEELAATEAXXXXXXXLGEDRGDRAASXXXXXXXXXXXXXVESAASPKG-DAPGSGGSRGPGGRFTGKVRRAGFGGKGAGAAAGMAAPA-GGLVLLGSPMVDATLEDTQGLKEVIEILKRETGLSDGANGDEGASTLRMEEDGPQNSTPTPWAQCDRCLKWRRIPWHIDPET-LPELWTCENNTWDPETASCDVAEIVDEEDMEASVIAGSAIVEEKALVVSSWIDVFCNQTHKWYPAKVIKEDREGDRVLVQFFGWSERYNQWVSKKSKDRIRRVHTHTQEVAPARKW-LNKMYG-RGSXXXXXXXXXXXXXXLPKKGGSDGDRGASGSGCGS-----NGKRKAAVLAKTATPKSDFVYYDGAPKSSLSREERIVARRNRTPAG---PHPPPNARSPLVRRKLGGAAKRNMERKMAATAAXXXXXXXXXAKAENGEAVGGEGDGSDTPGWLGGTEAAAGDGGRGDNFGAESKDFESAASAAADRAVHSKAEEHFRSWT-SNGDSEGAVAXXXXXXXXXXXLLKRGETPFKQDEADHAKSLLSGLATAFHSSPT-RVAEETWKRSPGGFGDSPAEQDNGG------GRNGAEAGGRSMLTISARDTDLAQSPSSSLSSSPVR---GKRVSPMSSPLSSRMMTPHLSMDYHRSESPGIGDSATG-TENGGD 3361
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: D8LRP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP6_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 1.310e-105 Identity = 394/969 (40.66%), Postives = 486/969 (50.15%), Query Frame = 3
Query: 3453 LLRRVQAGPPNGRVSVWEPTTGNILSGLKAPTRKRLAGFLNVSSHYRV-----PRCPTIALFFLLFLAYSPSMYRSHAFAIIHMIPVCFVASQPSQEPPPAPAPPSSEVVAVPEVKREAETPRCRPLDRKAWVKGQAVIKEMRQMLDKENVPHRGALKTMLLKVRDLLLGLRQLPNARNSAAADVLLLLAYTKTFAKPTTYATVYGDPVQVQAKELGNNVPRAVLRRYKKETRAAAKWLECKDARA--------------------------VAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPLPQGRGTLLASRRGQKKSTGARLKDSRTDPXXXXXXXXXXGGVKQAGSAKAALXXXXXXXXXGKSDGVTA------------------------TPMAVVDTETSEGDAVVXXXXXXXXXXXXXXXGDFPVPETPKSGKSGDGARETPGSGVCGGGNSRGALSERESDSGTRGATGAEGTKSSGGKARKGQRGKQRPKCKPARRPAPVKPVGAPRTDGCLEGHEVVHKYRPVAGPTYVLAQLLQWHNHGEGGNFNQAFDDNLRGCVRLPDVLEAYEGTGTYDRDQRVLLVNHLADAEQRKHPWPAKLDSAFGIEDPEETAAAATESGSKTGTMRSSGETPGAPDGATAAGDRGGD--------AGEVLSPKGGSMPGRGXXXXXXXXXXXXXXXXXRFGNRKRAVAGAAAEAPGGIVLLGSPMVDATLEDTQGLRKVIEVLKKETGMSTGGF----QIREASGEDGPQGVIPVPWAQCELCCTWRRLPWYVVPSRDLKDQFFCKDNKWNPEEQICDVRQALEEEDPSSMSVEFSDAVLVTKFEVGMWLDVYCPRMMQWFPAQVIKITKL--RIRVHFHKWQARFDEWLAKDDKARISSVHTHTRPVEVTREW--RLRGMTGSAGSIANASSA 6146
L R + G P+ R+ +W+P G++AP RK L F+ Y + R + PS+ A PP S++ A + +T RPLDRKA+ G+ VI +++ LD + V H+ LK LL+VR+LLLGLR LPNARN AAADVLLLLA+TKTFA+PT YATV GDPVQV AKE+GNNVP+AVL RYK E R A + + +D+R V A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX A S A XXXXXXXXX TP + E+ D XXXXXXXXXXXXXXX SG+ A +G + A+ K GG +++ + + G DGCL+G EV+H+Y PV+GP +VLAQLLQWHN GEGGN N+ FDD LRGCVRLPDVLEAYEG G+Y +DQR LLV HL D EQRKHPWPAKLD AFG EDPEE AA + + G+ +AAGD A SPKG PG G XX A AG AA A GG+VLLGSPMVDATLEDTQGL++VIE+LK+ETG+S G I EDGPQ P PWAQC+ C WRR+PW++ P L + + C++N W+PE CDV + ++EED + + S V V W+DV+C + +W+PA+VIK + R+ V F W R+++W++K K RI VHTHT+ V R+W ++ G GS A S A
Sbjct: 1910 LQRILSGGDPDDRIYMWDPVRETKSYGVRAPKRKTLPEFIKRHPLYELYVNQDSRAKPGSS------GSRPSVTSXXXXXXXXXXXXXXXXXXXXXXXXAAAGPPPSKLAA--QETSPVKTTTIRPLDRKAYNAGRDVIMKIQSKLDNDVVAHKAHLKKALLEVRELLLGLRTLPNARNKAAADVLLLLAHTKTFAEPTNYATVVGDPVQVLAKEIGNNVPKAVLARYKTEKRLAMQKRKKRDSRXXXXXXXXXXXXXXXXXXXXXXAASARVGAVDSPSSPPCTPSRADAGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSGSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKVAENGKTPENAAENESGSSDCESXXXXXXXXXXXXXXXXXXXXXXXVNSGRKQPAAXXX-----------XXXXXXXXXXTGAKPASVGSKGKKQGGWSKRARXXXXXXXXXXXXXXXXXQ--GPKPGDGCLKGDEVIHEYWPVSGPHFVLAQLLQWHNDGEGGNPNEPFDDKLRGCVRLPDVLEAYEGIGSYTKDQRKLLVTHLEDPEQRKHPWPAKLDVAFGKEDPEELAAKEAAASAXXAVGEDRGDR-------SAAGDAXXXXXXXXXXXAESAASPKG-DAPGSGGSRGPGGKFTGKGRRXXXXXXGAGAAAGMAAPA-GGLVLLGSPMVDATLEDTQGLKEVIEILKRETGLSEGANGDEGAITLRMEEDGPQNSTPTPWAQCDRCLKWRRIPWHIDPET-LPELWTCENNTWDPETASCDVAEVVDEEDMEASVIAGSAIVEEKALVVSSWIDVFCNQTHKWYPAKVIKEDREGDRVLVQFFGWSERYNQWVSKKSKDRIRRVHTHTQEVAPARKWLNKMYGPGSGGGSEAERSEA 2847
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: A0A836CJD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD9_9STRA) HSP 1 Score: 140 bits (353), Expect = 3.150e-29 Identity = 111/402 (27.61%), Postives = 160/402 (39.80%), Query Frame = 3
Query: 4956 LEGHEVVHKYRPVAGPTYVLAQLLQWHNHGEGGN---FNQAFDDNLRGCVRLPDVLEAYEGTGTYDRDQRVLLVNHLADAEQRKHPWPAKLDSAFGIEDPEETAAAATESGSKTGTMRSSGETPGAPDGATAAGDRGGDAGEVLSPKGGSMPGRGXXXXXXXXXXXXXXXXXRFGNRKRAVAGAAAEAPGGIVLLGSPMVDATLEDTQGLRKVIEVLKKETGMSTGGFQIREASGEDGPQGVIPVPWAQCELCCTWRRLPWYVVPSRDLKDQFFCKDNKWNPEEQICDVRQALEEEDPSSMSVEFSDAVLVTK--------------------FEVGMWLDVYCPRMMQWFPAQVIKITKLRIRVHFHKWQARFDEWLAKDDKARISSVHTHTRPVEVTREW 6092
L G EVVH+YR P +VL+QLL+WHN G GG+ + A L GCV+LPD + G Y +R L+ HL D +QRKH W L +A T A +++ G+ A DR + VL+ R + R+ +V A A G A + ED P+ W QC+ C WRR+PW+ + D+ D F C DN W P+ CDV EEE+ V +SDA + G+W+D YC + QW+PA+++ + R++VHF+ W ++DEWL + K + +H TR T +W
Sbjct: 1574 LRGDEVVHEYRHKYTPRHVLSQLLRWHNDGHGGSGGDADAAVATLLGGCVQLPDPAACFAGAVAYGEAERRALLRHLEDPQQRKHAWSDALMAAL-------TGGAQSKALPLYGSPM-----------LDAVLDRTNNLAAVLNTL------RQETAQPVAASSTDAIVPGKGKRRRSSVESNAQPARG-----------AGKKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDQPESKSL--WVQCDRCKRWRRMPWHCSEA-DVPDAFVCADNAWAPQFGSCDV----EEEEEGEGEV-WSDATVPAAEGDGGDMGGXXXXXXXXXXGLLEGLWIDAYCSKTEQWYPAKLLSVEPGRVKVHFNMWNPKYDEWLQRG-KGYLQDLHARTRTTRHTAKW 1931
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: A0A7S1UQG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQG0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.550e-16 Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 3
Query: 5652 EDGPQGVIPVPWAQCE--LCCTWRRLPWYVVPSRDLKDQFFCKDNKWNPEEQICDVRQ-ALEEEDPSSMSVEFS------DAVLVTKFEVGMWLDVYCPRMMQWFPAQVIKITKL----RIRVHFHKWQARFDEWL 6020
++G W QCE C WR+LPW+V L +QFFCKDNKWNP+ CD ++ A +E DP++ + + V + VG DVY P ++F A+VI++T++ R+RVH+ K RFDEWL
Sbjct: 151 DEGMPAQAVANWVQCENPKCLKWRKLPWHVDLDL-LPEQFFCKDNKWNPKAASCDSQEDAWDESDPAANGNGATPTDTNVNGVRDAEISVGAKFDVYRPTKKKYFSAEVIQVTRVGTVRRVRVHYAKTPERFDEWL 285
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: A0A7S4QSJ7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QSJ7_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.280e-11 Identity = 85/394 (21.57%), Postives = 151/394 (38.32%), Query Frame = 3
Query: 5007 YVLAQLLQWHNHGEGGNFNQAFDDNLRGCVRLPDVLEAYEGTG----------------TYDRDQRVLLVNHLADAEQRKHPWPAKLDSAFGIEDPEETAAAATESGSKTGTMRSSGETPGAPDGATAAGDRGGDAGEVLSPKGGSMPGRGXXXXXXXXXXXXXXXXXRFGNRKRAVAGAAA-EAPGGIVLLGSPMVD--ATLEDTQGLRKVIEVLKKETGMST------------GGFQIREASGEDGPQGVIPVPWAQCEL--CCTWRRLPWYVVPSRDLKDQFFCKDNKWNPEEQICDVRQALEEEDPSSMSVEFSDAVLV-TKFEVGMWLDVYCPRMMQWFPAQVIKITKL----RIRVHFHKWQARFDEWLAKDDKARISSVHTHTRPV 6074
YVL+QLLQW+N G G + ++ GCV LP + + Y + R +L++ L D +R +PW ++ S F I E N +R + +A + P +GSP+VD T +DT ++ + + K+++ +S ++ ++G W QCE C WR+LPW+V L + FFCKDN WNP CD + + +ED + + + A + + F G DV R +++ +V+++ + R++ +F + + FDEW+ + RI+ ++++T P+
Sbjct: 1090 YVLSQLLQWYNGGIG---QKPGLPDMTGCVILPAMSGCWTDKDIAKEVKLVKWKKSRITNYSAEVRPMLIDWLEDRFKRGNPWSDEIASFFDISAENE-------------------------------------------------------------------------NVERQIGSESAWQCP-----MGSPVVDFLVTGDDTSIIQVLHALRKQDSEVSAKRGLCETILKPDSAVDSLHSTVDEGMPVQAVANWVQCENPNCLKWRKLPWHVDTDL-LPENFFCKDNVWNPGSNSCDSPEDVWDEDDALVKSGDTRAEMAESSFIPGARFDVLQGRKNKYYEGEVVEVDFMSEVKRVKFYFPRMKNNFDEWIDLNS-GRIAPLNSYTEPI 1400
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Match: A0A4D9CUJ3_9STRA (SET domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUJ3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 5.840e-5 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query: 3891 PHRGALKTMLLKVRDLLLGLRQLPNARNS--AAADVLLLLAYTKTFAKPTTYATVYGDPVQVQAKELGNNVPRAVLRR 4118
P R + LL++RDLLL L + R AAAD LLL+A+T T +P YA V PV VQA++LG + RA ++R
Sbjct: 1133 PSRERARQELLRLRDLLLALDRASGGRTRHLAAADALLLIAHTDTLVQPAAYALVTSPPVSVQARDLGQPILRAKIKR 1210 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1.15.1 >prot_D-herbacea_F_contig1.15.1 ID=prot_D-herbacea_F_contig1.15.1|Name=mRNA_D-herbacea_F_contig1.15.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=1585bp MQKKGGLAISLPQKTTAMDEEPRAEPTASSANGGADAPNATAASAASVDDback to top mRNA from alignment at D-herbacea_F_contig1:660086..681169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1.15.1 ID=mRNA_D-herbacea_F_contig1.15.1|Name=mRNA_D-herbacea_F_contig1.15.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=21084bp|location=Sequence derived from alignment at D-herbacea_F_contig1:660086..681169+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1:660086..681169+ >mRNA_D-herbacea_F_contig1.15.1 ID=mRNA_D-herbacea_F_contig1.15.1|Name=mRNA_D-herbacea_F_contig1.15.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=9510bp|location=Sequence derived from alignment at D-herbacea_F_contig1:660086..681169+ (Desmarestia herbacea DmunF female)back to top |