mRNA_D-herbacea_F_contig1.120.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.120.1
Unique NamemRNA_D-herbacea_F_contig1.120.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:3001917..3003507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size397
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.120.1prot_D-herbacea_F_contig1.120.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 3001918..3003507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927380.805058-CDS-D-herbacea_F_contig1:3001917..30020071622927380.805058-CDS-D-herbacea_F_contig1:3001917..3002007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3001918..3002007 -
1690790135.5387392-CDS-D-herbacea_F_contig1:3001917..30020071690790135.5387392-CDS-D-herbacea_F_contig1:3001917..3002007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3001918..3002007 -
1622927380.816336-CDS-D-herbacea_F_contig1:3002672..30027891622927380.816336-CDS-D-herbacea_F_contig1:3002672..3002789Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3002673..3002789 -
1690790135.5514987-CDS-D-herbacea_F_contig1:3002672..30027891690790135.5514987-CDS-D-herbacea_F_contig1:3002672..3002789Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3002673..3002789 -
1622927380.8263748-CDS-D-herbacea_F_contig1:3003318..30035071622927380.8263748-CDS-D-herbacea_F_contig1:3003318..3003507Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3003319..3003507 -
1690790135.5606973-CDS-D-herbacea_F_contig1:3003318..30035071690790135.5606973-CDS-D-herbacea_F_contig1:3003318..3003507Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3003319..3003507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.120.1

>prot_D-herbacea_F_contig1.120.1 ID=prot_D-herbacea_F_contig1.120.1|Name=mRNA_D-herbacea_F_contig1.120.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=132bp
KSCRFRTAKGTWRQGTAGKYKFTPWHPGVLKRLPRDLMELYPAAMRRLAK
FCWHPTMEFLSVQISGLGFCTFVFHLKYQENRPGIMPTALRDLMVNKKNV
QLDGACEELEIGFARVEAFGEGGFESSGNIVT
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mRNA from alignment at D-herbacea_F_contig1:3001917..3003507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.120.1 ID=mRNA_D-herbacea_F_contig1.120.1|Name=mRNA_D-herbacea_F_contig1.120.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1591bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3001917..3003507- (Desmarestia herbacea DmunF female)
AAAAGCTGCAGGTTTCGAACCGCAAAAGGAACATGGAGACAGGGTACCGC
CGGCAAGTACAAGTTCACTCCTTGGCATCCAGGCGTACTTAAGCGACTTC
CGCGTGACCTGATGGAGTTGTACCCAGCTGCCATGCGAAGGCTTGCAAAG
TTCTGCTGGCATCCTACCATGGAATTTCTCTCCGTCCAGGTGGGAAGTTT
TTTTTTTTTCTATGGTGGTGGGTAATGTTTCCCCCCTGCGCTTTTGTACA
ACGAACTCTATCTAGCTGTTGCCGATGCACATCCGATCGACTGCGTCGAA
TATGTAACGGTGTGTGTCGCTGCCAGTGGTACCTCCACATGATCGTTCTC
TGCAAACCCTGTTGTTGAGAAAAGGGGTTTGGACACCCTTATATTGTTGA
GTATGATTGTCGAGTTTAACTTACCGGGACTGGCCTGCGTACCAACAAAC
GCTTGGACCGGCTTCTGTGGCCGTCAGTGAACCCATTGTGTTGACAGCCT
TTGGCGGAGAAGCGGCGCCGCGGCTGCAACAGGTCGATTTCCCTGTTGGC
GAAAAAGCATCGATCATCATCGTTACGAATGAGAGTTGCAAGTTCTCCGT
CAGAGCATGCGACCAGCTGTTGAAGCGCGCACGTAGACTGACACCTGCAA
TGCTTGGCTTCGACTGTGACTGGAGCGTACGATTGTCTACGCCTCGTCGC
CTCGTGGTAACGGTGCAGATATCAGGGCTCGGCTTCTGCACTTTCGTTTT
TCACCTTAAGTATCAGGAGAACCGACCCGGGATCATGCCCACAGCTCTCC
GAGACTTGATGGTGAACAAGAAGAACGTACAGCTGGTGAGTGGGTTTTGT
CTTAGCGAATACATTAGCGTAACACGGATTTGTTGATTTTGCCCTGCCTG
ACAGGCGTGCATATCATATACGTACGTATCAAGAAGTCGTTCTTAAGCGC
AACGATTGGCTACCCCACCCACGACAAGCTTTCAGTGGTTATTGGGTGCT
GCCGATGAAACTATGACAACTGTACACGGCCACCCTCGGTTACTTCAAAG
AGGGGCCTTACGTTGTATGAAGCTCCCCCATGTACCCCGAGAAACACACA
CAGACACTCGAACTACATACTGTAGACTCTGCGCCCCGCACAGACCCTAC
GTCCCGCGCTCCGTGCTCGCTTGGCCTGTACGGAGTCAGTCAGCTAATGG
CACTCCCGAACGTAGTTTCCGTCATGCTACGCCAACTTTTTGAACACTAC
AAGTTGGCGGAGGGAGGAGGGCCCAGTGTCTCAAAATCGTCCTGGTACAA
CTAGCAGAACGTTCTCTGTTATTTTATCCATCGCCGAGGACACAACTACA
GTCAGCGCTATATATAATTCCTCGGGGCAATGTGTCTAAACATTGGTCGA
AAAGCGCTTGTTCGTGAATGCCCACGCTTTCTTAGTATACTAGTTTCCTA
CATCGGCCTTTATGAGTGTCTCCAATTGTGCGGGTCTCTATCGGGGGCAG
GACGGTGCTTGCGAGGAGCTTGAGATAGGATTCGCTCGAGTCGAAGCGTT
TGGCGAGGGCGGCTTCGAGTCGTCTGGAAATATCGTCACGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:3001917..3003507-

>mRNA_D-herbacea_F_contig1.120.1 ID=mRNA_D-herbacea_F_contig1.120.1|Name=mRNA_D-herbacea_F_contig1.120.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=792bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3001917..3003507- (Desmarestia herbacea DmunF female)
AAAAGCTGCAGGTTTCGAACCGCAAAAGGAACATGGAGACAGGGTACCGC
CGGCAAGTACAAGTTCACTCCTTGGCATCCAGGCGTACTTAAGCGACTTC
CGCGTGACCTGATGGAGTTGTACCCAGCTGCCATGCGAAGGCTTGCAAAG
TTCTGCTGGCATCCTACCATGGAATTTCTCTCCGTCCAGAAAAGCTGCAG
GTTTCGAACCGCAAAAGGAACATGGAGACAGGGTACCGCCGGCAAGTACA
AGTTCACTCCTTGGCATCCAGGCGTACTTAAGCGACTTCCGCGTGACCTG
ATGGAGTTGTACCCAGCTGCCATGCGAAGGCTTGCAAAGTTCTGCTGGCA
TCCTACCATGGAATTTCTCTCCGTCCAGATATCAGGGCTCGGCTTCTGCA
CTTTCGTTTTTCACCTTAAGTATCAGGAGAACCGACCCGGGATCATGCCC
ACAGCTCTCCGAGACTTGATGGTGAACAAGAAGAACGTACAGCTGATATC
AGGGCTCGGCTTCTGCACTTTCGTTTTTCACCTTAAGTATCAGGAGAACC
GACCCGGGATCATGCCCACAGCTCTCCGAGACTTGATGGTGAACAAGAAG
AACGTACAGCTGGACGGTGCTTGCGAGGAGCTTGAGATAGGATTCGCTCG
AGTCGAAGCGTTTGGCGAGGGCGGCTTCGAGTCGTCTGGAAATATCGTCA
CGGACGGTGCTTGCGAGGAGCTTGAGATAGGATTCGCTCGAGTCGAAGCG
TTTGGCGAGGGCGGCTTCGAGTCGTCTGGAAATATCGTCACG
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